View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4773_low_13 (Length: 242)
Name: NF4773_low_13
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 26556119 - 26556335
Alignment:
| Q |
7 |
gtcacgtgacccaaaaagctaacatcaggaactaaaagcaatacttttgaatttgcagagatttaatccaatcaaaaaac-cttacaagattaaaaccaa |
105 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
26556119 |
gtcacgtgacccaataagctaacatcaagaactaaaagcaatacttttgaatttgcagagatttaatccaataaaaaaaaacttacaagactaaaaccaa |
26556218 |
T |
|
| Q |
106 |
aaaacgctatagttgcaaggactaaaattatatttaaacctatagtacgtatactatattcatttattcaccagtatttaattataatagttacaaagta |
205 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26556219 |
aaaacattatagttgcaaggactaaaatcatatttaaaccta--gtacgtatgctatattcatttattcaccagtatttaattataatagttacaaagta |
26556316 |
T |
|
| Q |
206 |
aggataaactaacctatgt |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26556317 |
aggataaactaacctatgt |
26556335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 22159389 - 22159338
Alignment:
| Q |
94 |
gattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaacc |
145 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
22159389 |
gattaaaaccaaaaaacactataattgcatggactaaaatcatatttaaacc |
22159338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 22218097 - 22218046
Alignment:
| Q |
94 |
gattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaacc |
145 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
22218097 |
gattaaaaccaaaaaacactataattgcatggactaaaatcatatttaaacc |
22218046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 50597351 - 50597261
Alignment:
| Q |
57 |
atttgcagagatttaatccaatcaaaaaaccttacaagattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaaccta |
147 |
Q |
| |
|
|||||||| || | ||||||| ||||||| | ||| ||| |||||| |||||||| || | ||||| |||||||||| ||||||||||||| |
|
|
| T |
50597351 |
atttgcagggactaaatccaaacaaaaaaacatactagactaaaactaaaaaacgttacaattgcagggactaaaatcatatttaaaccta |
50597261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 38305977 - 38306021
Alignment:
| Q |
97 |
taaaaccaaaaaacgctatagttgcaaggactaaaattatattta |
141 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
38305977 |
taaaaccaaaaaacactataattgcaaggactaaaatcatattta |
38306021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 18953438 - 18953375
Alignment:
| Q |
80 |
aaaaaaccttacaagattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaa |
143 |
Q |
| |
|
|||||| ||||||| | |||||||||| ||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
18953438 |
aaaaaaacttacaaaactaaaaccaaataacgctatagttggatagactaaaatcatatttaaa |
18953375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University