View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773_low_16 (Length: 235)
Name: NF4773_low_16
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773_low_16 |
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| [»] scaffold0066 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 21081583 - 21081737
Alignment:
| Q |
80 |
tttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaac |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21081583 |
tttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactaatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaac |
21081682 |
T |
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| Q |
180 |
cttttgttttgatatatcagaagtttgttgatgactagaatgatgatgtccatct |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21081683 |
attttgttttgatatatcagaagtttgttgatgactagaatgatgatgttcatct |
21081737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 23746114 - 23746289
Alignment:
| Q |
61 |
atgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacg--tggatagagaaga |
158 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23746114 |
atgatgatcttgttcttactttatcagcagagtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacgaatggatagagaaga |
23746213 |
T |
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| Q |
159 |
tgaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatgatgatgtccatct |
234 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
23746214 |
tgaatttggttcgtcttcatccttttgttttgatatatcagaagtttgttgatgactagaataatgatgttcatct |
23746289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 2007 - 2175
Alignment:
| Q |
61 |
atgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacg--tggatagagaaga |
158 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
2007 |
atgatgatcttgttcttactttatcagcagtgtcaccaatgattaactctttaggatgatcaacaactgatttccagcttggaggaatggatagagaaga |
2106 |
T |
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| Q |
159 |
tgaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatgatgatg |
227 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2107 |
tgaatttggttcgtcttcatccttttgttttgatatatcagaagtttgttgatgactagaatgatgatg |
2175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 55 - 234
Target Start/End: Complemental strand, 19975 - 19803
Alignment:
| Q |
55 |
cttggaatgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacgtggatagag |
154 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||| || |
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| T |
19975 |
cttggaatgatgatcttgttcttactttatcagcagtgtcaccaatgattaattcttttggatgatcaacaactgatttccagcttgga---ggaatga- |
19880 |
T |
|
| Q |
155 |
aagatgaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatgatgatgtccatct |
234 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |
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| T |
19879 |
---atgaatctggttcatcttcatccttttgttttgatatatcagaggtttgttgatgactagaatgatgaggttcatct |
19803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 2159325 - 2159165
Alignment:
| Q |
55 |
cttggaatgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacgtggatagag |
154 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| || |
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| T |
2159325 |
cttggaatgatgatcttgttcttactttatcagcagtgtcaccaatgattaattctttaggatgatcaacaactgatttccagcttgga---ggaatga- |
2159230 |
T |
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| Q |
155 |
aagatgaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatga |
222 |
Q |
| |
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||||| |||||| |||||| ||| |||||||||| |||||| ||||||||||| ||||||||| |
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| T |
2159229 |
---atgaacttggttcatcttcattcttctgttttgatacatcagaggtttgttgatgtctagaatga |
2159165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 40089572 - 40089732
Alignment:
| Q |
55 |
cttggaatgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacgtggatagag |
154 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||| || |
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| T |
40089572 |
cttggaatgatgatcttgttcttactttatcagcagtgtcaccaatgattaattctttaggatgatcaacaactgatttccagtttgga---ggaatga- |
40089667 |
T |
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| Q |
155 |
aagatgaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatga |
222 |
Q |
| |
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|||||| |||||| |||||| ||| |||||||||| |||||| ||||||||||| ||||||||| |
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| T |
40089668 |
---atgaatttggttcatcttcattcttctgttttgatacatcagaggtttgttgatgtctagaatga |
40089732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 234
Target Start/End: Complemental strand, 20175420 - 20175248
Alignment:
| Q |
55 |
cttggaatgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacgtggatagag |
154 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||| ||| | |
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| T |
20175420 |
cttggaatgatgatcttgttcttactttatcagcagtgtcaccaatgattaatttttttggatgatcaacaactgatttccagcttgga---ggaatg-- |
20175326 |
T |
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| Q |
155 |
aagatgaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatgatgatgtccatct |
234 |
Q |
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|||||| || ||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||| || ||||| |
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| T |
20175325 |
--tatgaatttgtttcatcttcatttttttgttttgatatatcagatgtttgttgatgtctagaatgatgaggttcatct |
20175248 |
T |
|
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