View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773_low_2 (Length: 568)
Name: NF4773_low_2
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 25 - 567
Target Start/End: Original strand, 3202734 - 3203276
Alignment:
| Q |
25 |
agggagagagaaagtacatcaacatcatcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaa |
124 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||| |||||||| |||||| ||| | |||||||||||||| |
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| T |
3202734 |
agggagagagaaagaacatcaacaccatcatcaacagcaacatccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaa |
3202833 |
T |
|
| Q |
125 |
ttgccaagtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttttacgggccttccagcggccgtgctggccgt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3202834 |
ttgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccgt |
3202933 |
T |
|
| Q |
225 |
gtgagttccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattca |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202934 |
gtgagttccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattca |
3203033 |
T |
|
| Q |
325 |
caatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatcc |
424 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203034 |
caatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatcc |
3203133 |
T |
|
| Q |
425 |
ctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgagttgtgtgcaatgagaaaatcttttccggtcg |
524 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
3203134 |
ctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcg |
3203233 |
T |
|
| Q |
525 |
aattgacagaacctcctcagtctcttctagaacctttgcttct |
567 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
3203234 |
aattgacagaacctcctcattctcttctagaaccttggcttct |
3203276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 566
Target Start/End: Original strand, 3208702 - 3209249
Alignment:
| Q |
19 |
cctccgagggagagagaaagtacatcaacatcatcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3208702 |
cctccgagggagagagaaagtacatcaacatcatcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactt |
3208801 |
T |
|
| Q |
119 |
tgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttttacgggccttccagcggccgtgct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3208802 |
tgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcggccgtgct |
3208901 |
T |
|
| Q |
219 |
ggccgtgtgagttccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtg |
318 |
Q |
| |
|
||| ||||||||||| |||||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3208902 |
ggctgtgtgagttccatggccaacatcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtg |
3209001 |
T |
|
| Q |
319 |
aattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtccagcattccaatta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
3209002 |
aattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaatta |
3209101 |
T |
|
| Q |
419 |
tgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgagttgtgtgcaatgagaaaatcttttc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||| ||||| | || || || |
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|
| T |
3209102 |
tgatccctttaccttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctc |
3209201 |
T |
|
| Q |
519 |
cggtcgaattgacagaacctcctcagtctcttctagaacctttgcttc |
566 |
Q |
| |
|
| | ||| |||| |||||||||||| ||||||||||| |||| ||||| |
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|
| T |
3209202 |
cagccgagttgatagaacctcctcattctcttctagagccttggcttc |
3209249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 25 - 567
Target Start/End: Original strand, 3216647 - 3217198
Alignment:
| Q |
25 |
agggagagagaaagtacatcaacatcatcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaa |
124 |
Q |
| |
|
||||||| ||||||||||||||| | || |||||||||||||||||||| |||||| ||| ||| |||| |||||| | || ||||||||||||| | |
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|
| T |
3216647 |
agggagattgaaagtacatcaacaccgtcttcaactgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtaga |
3216746 |
T |
|
| Q |
125 |
ttgccaagtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttttacgggccttccagcggccgtgctggccgt |
224 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| ||||| ||||| || || |||||||| || || | ||| |||||||||| |||||||||||||| |
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|
| T |
3216747 |
ttgccaagtgtgcatctggtgccatgcctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgt |
3216846 |
T |
|
| Q |
225 |
gtgagttccgtggccaacataatcgtatggaagggatgaattt---------acgatgttccttgctccaatgatcttcttgttacaaatcctctcccct |
315 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| ||| ||||| |||| ||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
3216847 |
gtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccct |
3216946 |
T |
|
| Q |
316 |
gtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtccagcattccaa |
415 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||| |
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|
| T |
3216947 |
gtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaa |
3217046 |
T |
|
| Q |
416 |
ttatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgagttgtgtgcaatgagaaaatctt |
515 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||| ||||| ||||||||||||||||||||||||| ||||||||||| || ||||||| || || |
|
|
| T |
3217047 |
ttatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgagaggatgtt |
3217146 |
T |
|
| Q |
516 |
ttccggtcgaattgacagaacctcctcagtctcttctagaacctttgcttct |
567 |
Q |
| |
|
||| ||||||||||| ||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
3217147 |
ttctggtcgaattgatagaacctcctccttctcttctagagccttggcttct |
3217198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 3232106 - 3232142
Alignment:
| Q |
316 |
gtgaattcacaatggccattccattttgcaggtggtg |
352 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtggtg |
3232142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 3177934 - 3177901
Alignment:
| Q |
317 |
tgaattcacaatggccattccattttgcaggtgg |
350 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtgg |
3177901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 3240906 - 3240939
Alignment:
| Q |
317 |
tgaattcacaatggccattccattttgcaggtgg |
350 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtgg |
3240939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 3221873 - 3221909
Alignment:
| Q |
316 |
gtgaattcacaatggccattccattttgcaggtggtg |
352 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
3221873 |
gtgaattcgcaatggcctttccattttgcaggtggtg |
3221909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 3226855 - 3226891
Alignment:
| Q |
316 |
gtgaattcacaatggccattccattttgcaggtggtg |
352 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
|
|
| T |
3226855 |
gtgaattcacaatgacctttccattttgcaggtggtg |
3226891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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