View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773_low_4 (Length: 547)
Name: NF4773_low_4
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 270 - 537
Target Start/End: Complemental strand, 16067190 - 16066927
Alignment:
| Q |
270 |
tgtgttttttgtttctggtacttgtggcaaatggtgctagtttcatctcaaatattattgtttcaaaatatctagaattcgacgagacaaaaccttgttg |
369 |
Q |
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| T |
16067190 |
tgtgttttttgtttctagtacttgtgccatatggtgctagtttcgtttcaaatattattgtttcaaaatatctagaattcgacgagacaaaaccttgttg |
16067091 |
T |
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| Q |
370 |
cttggattgcccattaggtaattgttgcttgttgggtttctgggcaatctttataatgccttacatattgttatgtgcttttattcctcggtcattcatt |
469 |
Q |
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| T |
16067090 |
cttggattgcccattaggtaattgttgcttattgggtttctaggcaatctttataatgccttacatattgttatgtgcttttattcctcggtcat----t |
16066995 |
T |
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| Q |
470 |
catataagcagtaatatggatttaactcacttcaaagagtgaaaaaatatttttatttcattcctatg |
537 |
Q |
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| T |
16066994 |
catataatcagtaatatggatttaactcacttcaaagagtgaaaaaagatttttatttcattcctatg |
16066927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 290 - 537
Target Start/End: Complemental strand, 16061894 - 16061651
Alignment:
| Q |
290 |
cttgtggcaaatggtgctagtttcatctcaaatattattgtttcaaaatatctagaattcgacgagacaaaaccttgttgcttggattgcccattaggta |
389 |
Q |
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| T |
16061894 |
cttgtggcaaatggagctagtttcgtttcaaatagtattgtttcaaaatatctagaattcgacgagacaaaaccttgttgcttggattacccattaggta |
16061795 |
T |
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| Q |
390 |
attgttgcttgttgggtttctgggcaatctttataatgccttacatattgttatgtgcttttattcctcggtcattcattcatataagcagtaatatgga |
489 |
Q |
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| T |
16061794 |
attgttgcttgttgggtttctagacaatctttataatgccttacataacgttatgtgcttttattcctcggtcat----tcatataagcagtaatatgga |
16061699 |
T |
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| Q |
490 |
tttaactcacttcaaagagtgaaaaaatatttttatttcattcctatg |
537 |
Q |
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| T |
16061698 |
tttaactcacttcaaagagtgaaaaaagatttttatttcattcctatg |
16061651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 270 - 537
Target Start/End: Complemental strand, 16070582 - 16070320
Alignment:
| Q |
270 |
tgtgttttttgtttctggtacttgtggcaaatggtgctagtttcatctcaaatattattgtttcaaaatatctagaattcgacgagacaaaaccttgttg |
369 |
Q |
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| T |
16070582 |
tgtgttttttgtttctagtacttctggcaaatggtgctagtttcgttttaaatattactgtttcaaaatatctagaattcgacgagacaaaaccttgttg |
16070483 |
T |
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| Q |
370 |
cttggattgcccattaggtaattgttgcttgttgggtttctgggcaatctttataatgccttacatattgttatgtgcttttattcctcggtcattcatt |
469 |
Q |
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| T |
16070482 |
cttggattgcccattaggtgattgttgcttgttgggtttctagataatctttataatgccttacatatcgttatgtgcttttattcctcggtcat----t |
16070387 |
T |
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| Q |
470 |
catataagcagtaatatggatttaactcacttcaaagagtgaaaaaatatttttatttcattcctatg |
537 |
Q |
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| T |
16070386 |
catataagcagtaatatggattttactcacttcaaagagtgaaaaaaga-ttttatttcattcctatg |
16070320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 16067505 - 16067271
Alignment:
| Q |
1 |
gagcaagaaaagtatgtcattgtatgcaaatccttcatgatattatcatgcaacacaacaagaaaccttcacttcatgtacaatccaagaaactaatttt |
100 |
Q |
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| T |
16067505 |
gagcaagaaaagtatgtcattgtatgcaaatccttcatgatattatcatgcaacacaacaagaaaccttcacttcatgtacaatccaagaaacaaatttt |
16067406 |
T |
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| Q |
101 |
tggccaatcgaattctagaatttctcaagaggtaatatttgaagcgaaagatcaacatttaccacaagtacaagaaacaaagaaacaccgtgtaacaaaa |
200 |
Q |
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| T |
16067405 |
tggcctgtcgaattctagaatttctcaagaggtaatatttgaagcgaaagatcaacatttaccacaagtacaagaaacaaa--------gtgtaacaaaa |
16067314 |
T |
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| Q |
201 |
aagttcttggcagaacaatatgtattttcatgatcattgactt |
243 |
Q |
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| T |
16067313 |
actttcttggcagaacaatatgtattttcatgatcatcgactt |
16067271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 16070890 - 16070694
Alignment:
| Q |
1 |
gagcaagaaaagtatgtcattgtatgcaaatccttcatgatattatcatgcaacacaacaagaaaccttcacttcatgtacaatccaagaaactaatttt |
100 |
Q |
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|||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||| |
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| T |
16070890 |
gagcaacaaaagtacgtcattgtatgcaaatccctcatgatattatcatgcaacacaacaagaaaccttcacttcatgtgcaatccagaaaacaaagttt |
16070791 |
T |
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| Q |
101 |
tggccaatcgaattctagaatttctcaagaggtaatatttgaagcgaaagatcaacatttaccacaagtacaagaaacaaagaaacaccgtgtaaca |
197 |
Q |
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| T |
16070790 |
tggcctgtccaattctagagtttctcaagaggtaacatttgaagccaaagatcaacatttaccgcaagtacaagaaacaaagaaacaccgtgtaaca |
16070694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 451
Target Start/End: Complemental strand, 16076843 - 16076728
Alignment:
| Q |
336 |
aatatctagaattcgacgagac-aaaaccttgttgcttggattgcccattaggtaattgttgcttgttgggtttctgggcaatctttataatgccttaca |
434 |
Q |
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|||||||| |||||||| |||| |||||||| || |||||||| | ||| |||| | ||||||||||||||||||| | ||||||||||| ||||| || |
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| T |
16076843 |
aatatctaaaattcgac-agaccaaaaccttatttcttggatttcacataaggtgaatgttgcttgttgggtttctagataatctttataaagccttgca |
16076745 |
T |
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| Q |
435 |
tattgttatgtgctttt |
451 |
Q |
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| T |
16076744 |
tatagttatgtgctttt |
16076728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 38878591 - 38878506
Alignment:
| Q |
151 |
atcaacatttaccacaagtacaagaaacaaagaaacaccgtgtaacaaaaaagttcttggcagaacaatatgtattttcatgatca |
236 |
Q |
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| T |
38878591 |
atcaccatttaccgcaattattagaaacaaagaaacatcatttaacaacaaatttcttggcagaacaatatgtatcttcaagatca |
38878506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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