View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4773_low_5 (Length: 542)
Name: NF4773_low_5
Description: NF4773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4773_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Original strand, 26555326 - 26555854
Alignment:
| Q |
11 |
cacagaggaccacatcagaagaatttattacagtaacatagtaatcacaatcccttctaacatggatgatggaactagcagaactcaattcattcaagtc |
110 |
Q |
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| T |
26555326 |
cacagaggaccacatcagaagaatttattacagtaacatagtaatcacaatcccttctaacatggatgatggaactagcagaactcaattcattcaagtc |
26555425 |
T |
|
| Q |
111 |
ctcattaaatccatagttttatttacttcattctcacctaaaaccttagataaatgctacgtactggtaaaggagaaccagatacaatggtttagtaaaa |
210 |
Q |
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| T |
26555426 |
ctcattaaatccatagttttatttacttcattctcacctaaaaccttagataaatgctacgtactggtaaaggagaaccagatacaatggtttagtaaaa |
26555525 |
T |
|
| Q |
211 |
cagtcacagtagttaactggcataacaagattggaaacttctctaacaaagatccgttgaaaaattttaaggcacagctaacatagcttagggtgtatat |
310 |
Q |
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| T |
26555526 |
cagtcacagtggttaactggcataacaaaattgaaaacttctctaacaaagatccgttgaaaaattttaaggcacagctaacatagcttaggatgtatat |
26555625 |
T |
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| Q |
311 |
atcagtatcgtccaatagcggctgtaggggcactctatcactatataggtatcgcatagcagaatttgaacaaattgctatgattttgtgctacac---- |
406 |
Q |
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| T |
26555626 |
atcagtatcgtcaaatagcggctttagtggcactatatcactatata------gcatagcagaatttgaacaaattgctatgattttgtgctacactatt |
26555719 |
T |
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| Q |
407 |
--gtacaaggtgttgtcaaatagcgactataacattgtagccagtgttattgatgggggaaagccaaaaatccgtcattttaatcattcatatccaccat |
504 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26555720 |
aagtacaaggtgttgtcaaatagcgactataacaatgtagccagtgttattgatgggggaaagccaaaaatccgtcattttaatcatccatatccaccat |
26555819 |
T |
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| Q |
505 |
aaaacactatgatgccctctaccaattggatatgg |
539 |
Q |
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|||||||||||||||| | |||||||||||||||| |
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| T |
26555820 |
aaaacactatgatgccttttaccaattggatatgg |
26555854 |
T |
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