View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4774-Insertion-1 (Length: 980)

Name: NF4774-Insertion-1
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4774-Insertion-1
NF4774-Insertion-1
[»] chr8 (17 HSPs)
chr8 (8-967)||(31646027-31646985)
chr8 (155-650)||(31637658-31638134)
chr8 (164-664)||(31630318-31630803)
chr8 (678-850)||(31637306-31637478)
chr8 (183-403)||(31652098-31652321)
chr8 (183-399)||(31656904-31657125)
chr8 (698-850)||(31630042-31630188)
chr8 (545-641)||(31656687-31656783)
chr8 (545-645)||(31651880-31651980)
chr8 (865-967)||(31651442-31651544)
chr8 (701-826)||(31651626-31651751)
chr8 (864-967)||(31637110-31637213)
chr8 (698-794)||(31656437-31656533)
chr8 (864-967)||(31656216-31656319)
chr8 (867-962)||(31629849-31629944)
chr8 (8-71)||(31638332-31638396)
chr8 (8-55)||(31630904-31630951)
[»] chr5 (2 HSPs)
chr5 (156-371)||(9104719-9104934)
chr5 (702-825)||(9105454-9105578)


Alignment Details
Target: chr8 (Bit Score: 844; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 844; E-Value: 0
Query Start/End: Original strand, 8 - 967
Target Start/End: Complemental strand, 31646985 - 31646027
Alignment:
Q  8 ggtacatgaccatttatcacccttaatcactggacaagcacctgaaaatcataacgcacatatacgagtgtaaatctagagttttagggttcaaactata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646985 ggtacatgaccatttatcacccttaatcactggacaagcacctgaaaatcataacgcacatatacgagtgtaaatctagagttttagggttcaaactata 31646886  T
Q  108 gaaactaacataaccctaacatttgccaataaaataaaaatgataataaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttc 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646885 gaaactaacataaccctaacatttgtcaataaaataaaaatgataataaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttc 31646786  T
Q  208 atactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaatccgaaagctcattccaccaagacacagagttaaaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||| ||||||    
T  31646785 atactccagaaaagtaatgcatcacccatctttggcttaattgaaagtcctttttttccacaatccgaaagctcattccaccaaggcacagagctaaaat 31646686  T
Q  308 ttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatcaaaaccaaaaagtgcacaccaatatcaacttcatatatat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646685 ttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaattgtatcatcaaaaccaaaaagtgcacaccaatatcaacttcatatatat 31646586  T
Q  408 attcatgatcatgaatatatacaattgaagtcaacaatgattgaatgaaactgaagtcatacttacaggtacatcaacattgttgctacacgttcaccgc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  31646585 attcatgatcatgaatatatacaattgaagtcaacaatgattgaatgaaactgaagtcatacttataggtacatcaacattgttgctacacgctcacccc 31646486  T
Q  508 cgttcttagtattaatctcatctgcaaagaaatcaggatgaggttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgc 607  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646485 cgttcttagtattaatctcatctgtaaagaaatcaggatgaggttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgc 31646386  T
Q  608 atattgtgaaacatagccaaattaatggttgtttaagtatatgatgaaacataacatgccatgtataaatgcagagaaaatgcataaagaacgcacctac 707  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646385 atattgtgaaacatagccaaattaatggttgtttaaatatatgatgaaatataacatgccatgtataaatgcagagaaaatgcataaagaacgcacctac 31646286  T
Q  708 aggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgcactaaat 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646285 aggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgcactaaat 31646186  T
Q  808 gcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagt-gccatgaaaaag-agaatctaacctgctgtccacactctttcccgtttcatcgtcaa 905  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||| |||||||||||||||||||||||||||       
T  31646185 gcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtggcaatgaaaaagaaaaatctaacctgttgtccacactctttcccgtttcatcgt--- 31646089  T
Q  906 caacagtcgatttaatgcatactaggcttggctatattgattagatg-tcacattcctctttt 967  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31646088 caacagtcgattt-atgcatactaggcttggctatattgattagatgttcacattcctctttt 31646027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 155 - 650
Target Start/End: Complemental strand, 31638134 - 31637658
Alignment:
Q  155 aaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaag 254  Q
    ||||||| ||||||||||| | ||||| ||||||||  ||| |||| |||||||| | |||||||||||  |||| ||||||||||||||||||||||||    
T  31638134 aaaagagttactaaccatgaacactcaatggatctacggttgcatcaggcttcatgccccagaaaagtatagcattacccatctttggcttaattgaaag 31638035  T
Q  255 tccnnnnnnnccacaatccgaaagctcattccaccaagacacagagttaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacattt 354  Q
    |||       |||||||| ||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| |    
T  31638034 tcccttttttccacaatcagaaagctcattccaccaaggcacagagctaaaatttcccttagcagatggaaacactgtctcacccccttcttcaacatct 31637935  T
Q  355 gaactgtatcatcaaaa-ccaaaaa--gtgcacaccaatatcaacttcatatatatattcatgatcatgaatatatacaattgaagtcaacaatgattga 451  Q
    |||||||||||||||||  ||| ||  |||||||||||||||||||||  ||||||||||||                    |||||| ||||||||| |    
T  31637934 gaactgtatcatcaaaatacaagaagtgtgcacaccaatatcaacttc--atatatattcat--------------------gaagtctacaatgattca 31637857  T
Q  452 atga-aactgaagtcatacttacaggtacatcaacattgttgctacacgttcaccgccgttcttagtattaatctcatctgcaaagaaatcaggatgagg 550  Q
    |||| |||| || |||||||||||||||||||||||||||||||| ||| ||||| || | ||||||||||| ||||||| ||||| | |||| ||||      
T  31637856 atgacaactaaactcatacttacaggtacatcaacattgttgctatacgctcacccccatgcttagtattaacctcatcttcaaagtagtcagtatgaaa 31637757  T
Q  551 ttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgcatattgtgaaacatagccaaattaatggttgtttaagtatatg 650  Q
     |||||||||||||||||||||||||||||||||||||||  |||||||| |||||||| || ||||||| | |  || |||| ||||||||||||||||    
T  31637756 atcgtacttttgtccaacttcataatggagaatattaacgtcttcgccatgctctgcatgttttgaaaca-aacttaaataatagttgtttaagtatatg 31637658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 164 - 664
Target Start/End: Complemental strand, 31630803 - 31630318
Alignment:
Q  164 actaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnn 263  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||          
T  31630803 actaaccatgcaaactcgatggatctaaagttccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtcctttttt 31630704  T
Q  264 nccacaatccgaaagctcattccaccaagacacagagttaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtat 363  Q
     |||||||||||||||||||||||||||| ||||||| ||| ||| ||||  |||  ||| |||||||||||||||||||||||||||| ||||||||||    
T  31630703 tccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgtat 31630604  T
Q  364 catcaa-aaccaaaaagtgcacaccaatatcaacttcatatatatattcatgatcatgaatatatacaattgaagtcaacaatgattgaatga---aact 459  Q
     |||||    ||||||||| ||||||||||||||  |||||             || ||| |     ||||||||| |||||||| |||||||   |  |    
T  31630603 aatcaatttacaaaaagtggacaccaatatcaacggcatat------------ccaagaaga-----aattgaagttaacaatgactgaatgacggagat 31630521  T
Q  460 gaagtcatacttacaggtacatcaacattgttgctacacgttcaccgccgttcttagtattaatctcatctgcaaagaaatcaggatgaggttcgtactt 559  Q
    ||||||  |||||||||||||||| ||||||||||| ||| | ||| || |||  |||||||   ||||| |||||| | ||   |||||| || |||||    
T  31630520 gaagtc--acttacaggtacatcagcattgttgctatacgctgacctccattcacagtattataatcatccgcaaagtagtctaaatgaggatcatactt 31630423  T
Q  560 ttgtccaacttcataatggagaatattaacgctttcgccattctctgcatattgtgaaacatagccaaattaatggttgtttaagtatatgatgaaacat 659  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||||| |||||||||  ||  || ||||||||||||||||||||||||||| ||    
T  31630422 ttgtccaacttcataacggagaacattaaagctttcgccgttctctgcataatgtgaaacacggctcaagtaatggttgtttaagtatatgatgaaaaat 31630323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 678 - 850
Target Start/End: Complemental strand, 31637478 - 31637306
Alignment:
Q  678 gcagagaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgata 777  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||  |||| ||||||||||| |||||||| ||||    
T  31637478 gcagacaaaatgcataaagaacacacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgata 31637379  T
Q  778 aaagttccagagcttgtacgtgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtg 850  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||    
T  31637378 aaagttccagagcttgttcgtgcactaaatgcaaaagaaatatgtaagcaaaaggtttgacatgaatgaagtg 31637306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 183 - 403
Target Start/End: Complemental strand, 31652321 - 31652098
Alignment:
Q  183 tggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaatccgaaagctca 282  Q
    ||||||||||||| |||| |||||||| |||||||||||||  |||| ||||||||||||||||||||| |||||       |||||||| |||||||||    
T  31652321 tggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaatcggaaagctca 31652222  T
Q  283 ttccaccaagacacagagttaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatcaaa--ac-caaaaag 379  Q
    |||||||||| ||||||| ||||||||||||  |||  ||||||||| ||||||||||||||||| |||| |||||||||||||| ||  ||  ||||||    
T  31652221 ttccaccaaggcacagagctaaaatttcccttggcatttggaaacaccgtctcacccccttcttcgacatctgaactgtatcatcgaattacaaaaaaag 31652122  T
Q  380 tgcacaccaatatcaacttcatat 403  Q
    || || ||||||||||||||||||    
T  31652121 tgaactccaatatcaacttcatat 31652098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 183 - 399
Target Start/End: Complemental strand, 31657125 - 31656904
Alignment:
Q  183 tggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaatccgaaagctca 282  Q
    ||||||||||||| |||| |||||||| |||||||||||||  |||| ||||||||||||||||||||| |||||       |||||||| |||||||||    
T  31657125 tggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgacagtcctccttttccacaatcggaaagctca 31657026  T
Q  283 ttccaccaagacacagagttaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatc-----aaaaccaaaa 377  Q
    |||||||||| ||||||| ||||||||||||  |||  ||| ||||| ||||||||||||||||||||||  ||||||||| |||     | ||  ||||    
T  31657025 ttccaccaaggcacagagctaaaatttcccttggcatttgggaacaccgtctcacccccttcttcaacatccgaactgtattatcgaattacaaaaaaaa 31656926  T
Q  378 agtgcacaccaatatcaacttc 399  Q
    |||| |||||||||||||||||    
T  31656925 agtgaacaccaatatcaacttc 31656904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 698 - 850
Target Start/End: Complemental strand, 31630188 - 31630042
Alignment:
Q  698 acgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacg 797  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||  ||||||||  | |||||||||||||||||| ||    
T  31630188 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattcctcacaatttcatcacctcctctgtcaagaaaagttccagagcttgttcg 31630089  T
Q  798 tgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtg 850  Q
    | | ||||||||      |||||||||||||||||||   |||||||||||||    
T  31630088 tacgctaaatgc------aatatgtaaacaaaaggttaaccatcaatgaagtg 31630042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 545 - 641
Target Start/End: Complemental strand, 31656783 - 31656687
Alignment:
Q  545 atgaggttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgcatattgtgaaacatagccaaattaatggttgttt 641  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||  ||  || ||||||||||||    
T  31656783 atgaggttcatacttttgtccaacttcataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttt 31656687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 545 - 645
Target Start/End: Complemental strand, 31651980 - 31651880
Alignment:
Q  545 atgaggttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgcatattgtgaaacatagccaaattaatggttgtttaag 644  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| | |||| |||| ||||||||||||||||||| ||   || |||||||||||||||    
T  31651980 atgaggttcatacttttgtccaacttcataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgtttaag 31651881  T
Q  645 t 645  Q
    |    
T  31651880 t 31651880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 865 - 967
Target Start/End: Complemental strand, 31651544 - 31651442
Alignment:
Q  865 atctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttaatgcatactaggcttggctatattgattagatg-tcacattcctc 963  Q
    |||||||| |||||||||||  ||||| ||||| ||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  31651544 atctaaccggctgtccacaccatttcctgtttcctcgtcaataacagccgattta-tgcatactaggctttgctatattgattagatgttcacattcctc 31651446  T
Q  964 tttt 967  Q
    ||||    
T  31651445 tttt 31651442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 701 - 826
Target Start/End: Complemental strand, 31651751 - 31651626
Alignment:
Q  701 cacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgc 800  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||| |||| |||||  |||||| || | ||||| |||||||||||| ||| |    
T  31651751 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgtccgttc 31651652  T
Q  801 actaaatgcaaaagaaatatgtaaac 826  Q
     |||||| || ||  |||||||||||    
T  31651651 cctaaatacagaatgaatatgtaaac 31651626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 864 - 967
Target Start/End: Complemental strand, 31637213 - 31637110
Alignment:
Q  864 aatctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttaatgcatactaggcttggctatattgattagatg-tcacattcct 962  Q
    ||||||||||||||| |||||||||||| |||  ||| |||||||||||||||||  |||| |  |||||||||||||||||||||||| ||||||||||    
T  31637213 aatctaacctgctgttcacactctttcctgttgtatcatcaacaacagtcgattt-ctgcacatcaggcttggctatattgattagatgttcacattcct 31637115  T
Q  963 ctttt 967  Q
    |||||    
T  31637114 ctttt 31637110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 698 - 794
Target Start/End: Complemental strand, 31656533 - 31656437
Alignment:
Q  698 acgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgt 794  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||| ||||  | ||||||  | ||| ||||||||||||||    
T  31656533 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcaccttctctgtcaagaaatgttccagagcttgt 31656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 864 - 967
Target Start/End: Complemental strand, 31656319 - 31656216
Alignment:
Q  864 aatctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttaatgcatactaggcttggctatattgattagatg-tcacattcct 962  Q
    ||||||||||||||| || ||||||||| ||||  ||||||| |||   ||||||| |||||||||||||| ||||||||||||||||| || |||||||    
T  31656319 aatctaacctgctgttcagactctttcctgttttctcgtcaataacttccgattta-tgcatactaggctttgctatattgattagatgttcgcattcct 31656221  T
Q  963 ctttt 967  Q
    |||||    
T  31656220 ctttt 31656216  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 867 - 962
Target Start/End: Complemental strand, 31629944 - 31629849
Alignment:
Q  867 ctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttaatgcatactaggcttggctatattgattagatg-tcacattcct 962  Q
    ||||||||||||||  ||||||||| |||||||  ||||||||||  |||||  |||||||| ||||||||| ||||||||||||| ||||||||||    
T  31629944 ctaacctgctgtccttactctttcctgtttcattatcaacaacagatgatttt-tgcatacttggcttggctgtattgattagatgttcacattcct 31629849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 31638396 - 31638332
Alignment:
Q  8 ggtacatgaccatttatcacccttaatcactggacaagcacctg-aaaatcataacgcacatata 71  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||| || ||||||||    
T  31638396 ggtacatgaccatttatcacccttgataactggacaagcacctgaaaaatcatcacacacatata 31638332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 31630951 - 31630904
Alignment:
Q  8 ggtacatgaccatttatcacccttaatcactggacaagcacctgaaaa 55  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  31630951 ggtacatgaccacttatcacccttgatcacaggacaagcacctgaaaa 31630904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 156 - 371
Target Start/End: Original strand, 9104719 - 9104934
Alignment:
Q  156 aaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagt 255  Q
    ||||||| ||||||||||||  ||   || |||||||||| |||| |||||||| |||||||||||||| ||||||||  ||||||||||||||||||||    
T  9104719 aaagagaaactaaccatgcaagcttgatgcatctaaagttgcatccggcttcatgctccagaaaagtaaagcatcacctctctttggcttaattgaaagt 9104818  T
Q  256 ccnnnnnnnccacaatccgaaagctcattccaccaagacacagagttaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttg 355  Q
    ||       |||||||| |||||||||||  |||| | ||||    | ||||| |||| ||||   || |||||||||||||||||||||||||||| ||    
T  9104819 ccttttttcccacaatcagaaagctcattataccacggcacattactgaaattccccttagcagcagggaacactgtctcacccccttcttcaacatctg 9104918  T
Q  356 aactgtatcatcaaaa 371  Q
     |||||||||| ||||    
T  9104919 tactgtatcattaaaa 9104934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 825
Target Start/End: Original strand, 9105454 - 9105578
Alignment:
Q  702 acctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgca 801  Q
    ||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||| |||||| |||| |||   | ||| ||||||||||| |||||  |     
T  9105454 acctacaggaataaaagtaaagtcggcaatttttttctcaatattcctcacaatcttatcacgtcccctggccagaaatgttccagagctagtacgcact 9105553  T
Q  802 ctaaatgca-aaagaaatatgtaaa 825  Q
    ||| ||| | |||||||||||||||    
T  9105554 ctacatgtagaaagaaatatgtaaa 9105578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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