View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774-Insertion-11 (Length: 818)
Name: NF4774-Insertion-11
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774-Insertion-11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 8 - 818
Target Start/End: Complemental strand, 9217464 - 9216656
Alignment:
| Q |
8 |
aagaatgtacgtaacatgatttcctgaaccatttattttaacgcagtgcaattactttcttcttaaagtgtcattgccttttaaattcttagtcttttag |
107 |
Q |
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| T |
9217464 |
aagaatgtacgtaacatgatttcctgaaccatttattttaacgcagtgcaattactttcttcttaaagtgtcattgccttttaaattcttagtcttttag |
9217365 |
T |
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| Q |
108 |
agttttaattcttaaacacactgttgatttctgttgaaaggcagttttcttcatccttgtattaaaagttttatagattaagaatcattcaaagtccaag |
207 |
Q |
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| T |
9217364 |
agttttaattcttaaacacactgttgatttctgttgaaaggcagttttcttcatccttgaaa-aatattgttttcaataaagaatcattcaaagtccaag |
9217266 |
T |
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| Q |
208 |
accatcattttcatcacatcgtcatctaacgaccgacactcacaacctcgagcatatttaaaaagagtgattctacaagacctcatatttgagagcatca |
307 |
Q |
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| T |
9217265 |
accatcattttcatcacatcgtcatctaacgaccgacactcacaacctcgagcatatttaaaaagagtgattctacaagacctcatatttgagagcatca |
9217166 |
T |
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| Q |
308 |
aactctaaaatttattatttgaggggttcaactagtaacaatttagaattaaaaatatagattgaaggtgtttaagtggcgaaatataataatggagttg |
407 |
Q |
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| T |
9217165 |
aactctaaaatttattatttgaggggttcaactagtaacaatttagaattaaaaatatagattgaaggtgtttaagtggcgaaatataataatggagttg |
9217066 |
T |
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| Q |
408 |
tcaagttcataataa-aaaagctaataaaacaaactgtccacggcaaaaaattaagttttctgagaagcattttaaaattcattattcttagactgaaga |
506 |
Q |
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| T |
9217065 |
tcaagttcataataaaaaaagctaataaaacaaactgtccacggcaaaaaattaagttttctgagaagcattttaaaattcattattcttagactgaaga |
9216966 |
T |
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| Q |
507 |
tttattttggttattcacaannnnnnnnatgggtcaagttagtccccgataaaaatagaatctaacgttgtatatgacatttttatatcaagaaaaaatt |
606 |
Q |
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| T |
9216965 |
tttattttggttattcacaattttttttatggttcaagttagtccccgataaaaatagaatctaacgttgtatatgacatttttatatcaagaaaaaatt |
9216866 |
T |
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| Q |
607 |
agtgttcgattcagtataacataggaattaattttgtacctagtatgaaaatactaatgactaaatggatattccaacactcctatttttatatgtcaaa |
706 |
Q |
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| T |
9216865 |
agtgttcgattcagtataacataggaattaa-tttgtacctagtatgaaaatactaatgactaaatggatattccaacactcctatttttatatgtcaaa |
9216767 |
T |
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| Q |
707 |
aatcaagcaaatcgttaattaaacaaaatattttaataatataccaaatatgagttaacaaaagaattgaataaatttaacactataagtttattttggt |
806 |
Q |
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| T |
9216766 |
aatcaagcaaatcgttaattaaacaaaatattttaataatataccaaatatgagttaacaaaagatttgaat-aattcagcactataagtttatttttgt |
9216668 |
T |
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| Q |
807 |
ttagcattacaa |
818 |
Q |
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| T |
9216667 |
ttagcattacaa |
9216656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 14628860 - 14628953
Alignment:
| Q |
70 |
ttaaagtgtcattgccttttaaattcttagtcttttagagttttaattcttaaacacactgttgatttctgttgaaaggcagttttcttcatcc |
163 |
Q |
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| T |
14628860 |
ttaaagtttctttgctctttaaattctaagtcttttagtgatctaatccttaaatacaatgttgatttttgtcgaaagacaattttcttcatcc |
14628953 |
T |
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