View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774-Insertion-12 (Length: 787)
Name: NF4774-Insertion-12
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774-Insertion-12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 8 - 787
Target Start/End: Original strand, 19476325 - 19477104
Alignment:
| Q |
8 |
ccaaattgacaatcacgtgataataaatgctcgtttcatttttcagctgtatctggagatggatttcttgcaagagacatagcaattgagaacagagctg |
107 |
Q |
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| T |
19476325 |
ccaaattgacaatcacgtgataataaatgctcatttcatttttcagctgtatctggagatggatttcttgcaagagacatagcaattgagaacagagctg |
19476424 |
T |
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| Q |
108 |
gaccagagaaacatcaagcagttgcattaagagtaaatgcagatttaacagcattttacaaatgtgcaatttatggctaccaagacacactatatgttca |
207 |
Q |
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| T |
19476425 |
gaccagagaaacatcaagcagttgcattaagagtaaatgcagatttaacagcattttacaaatgcgcaatttatggttaccaagacacactttatgtcca |
19476524 |
T |
|
| Q |
208 |
ctcatttagacaattctatcgcgaatgcgacatttacgggacaatagatttcatatttggtaactccgcagtagtattacaagaatgcgacatcgtatca |
307 |
Q |
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| T |
19476525 |
ctcattcagacaattctaccgcgaatgcgacatttacgggacaatagatttcatatttggtaacgccgcagtagtattacaagaatgcgacatcgtatca |
19476624 |
T |
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| Q |
308 |
agaatgccattacctggtcaatttacagttataaccacgcaatcacgggataatcccgacgaagacacgggaatttcaatccaaaattgttcgattattg |
407 |
Q |
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| T |
19476625 |
agaatgccattacctggtcaatttacagttataaccgcgcaatcacgggataaccctgacgaagacacgggaatttcaatccaaaattgttcgattatcg |
19476724 |
T |
|
| Q |
408 |
ctacggatgagctttattcaaactctagtaaggtcaagagttaccttgggaggccgtggcgggttttttctagaacggttttaattgagtcttatattga |
507 |
Q |
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| T |
19476725 |
ctacggatgagctttattcaaactctagtaaggtcaagagttaccttgggaggccgtggagggttttttctagaacggttttaattgagtcttatattga |
19476824 |
T |
|
| Q |
508 |
tgattttattgatcaaaagggttggacaaaatggtcaaatgatcaaggtttggatacattgttttatggtgaatatgaaaattatggacctggttcaaag |
607 |
Q |
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| T |
19476825 |
tgattttattgatcaaaagggttggaccaaatggtcaaatgatcaaggtttggatacattgttttatggtgaatatgaaaattatggacctggttcaaag |
19476924 |
T |
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| Q |
608 |
attgataatcgtgttgaatgggttggttatcatttgatggattataatgatgcttataatttcagtgtttctgagtttattattggtgatcaatggcttg |
707 |
Q |
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| T |
19476925 |
attgataatcgtgttgaatgggttggttatcatttgatggattataatgatgcatataatttcagtgtttctgagtttattattggtgatcaatggcttg |
19477024 |
T |
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| Q |
708 |
agtctacttcagttccttatgatgatggaatttgacatagaaaagataatgtaactttggtttgttacatttttcattaa |
787 |
Q |
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| T |
19477025 |
agtctacttcagttccttatgatgatggaatttgacatagaaaagataatgtaactttggttttttacatttttcattaa |
19477104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 93 - 742
Target Start/End: Original strand, 51547977 - 51548632
Alignment:
| Q |
93 |
ttgagaacagagctggaccagagaaacatcaagcagttgcattaagagtaaatgcagatttaacagcattttacaaatgtgcaatttatggctaccaaga |
192 |
Q |
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||||||||| || ||||||||||| ||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||||| ||||| |||||||| |
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| T |
51547977 |
ttgagaacaaggcaggaccagagaagcatcaagcagttgcattaagagtgaacgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaaga |
51548076 |
T |
|
| Q |
193 |
cacactatatgttcactcatttagacaattctatcgcgaatgcgacatttacgggacaatagatttcatatttggtaactccgcagtagtattacaagaa |
292 |
Q |
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| T |
51548077 |
cacactttatgttcactcatttagacaattctatagagagtgtgacatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagca |
51548176 |
T |
|
| Q |
293 |
tgcgacatcgtatcaagaatgccattacctggtcaatttacagttataaccacgcaatcacgggataatcccgacgaagacacgggaatttcaatccaaa |
392 |
Q |
| |
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|| |||| |||||||||||||||||||| |||| || || || || | || ||| | ||| || || |||||||| || || |||||||||| |
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| T |
51548177 |
tgtaacattatatcaagaatgccattacctaaccaatacactgtaatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaa |
51548276 |
T |
|
| Q |
393 |
attgttcgattattgctacggatgagctttattcaaactctagtaaggtcaagagttaccttgggaggccgtggcgggttttttctagaacggttttaat |
492 |
Q |
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| T |
51548277 |
actgttcaattttagctactactgatttgtataacaactataacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcat |
51548376 |
T |
|
| Q |
493 |
tgagtcttatattgatgattttattgatcaaaagggttggacaaaatggtc------aaatgatcaaggtttggatacattgttttatggtgaatatgaa |
586 |
Q |
| |
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||||||||| ||||||| || ||||||| || ||| ||||| |||||||| ||||| |||| ||||| || |||| ||||||||| | || | |
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| T |
51548377 |
tgagtcttacattgatgtgttcattgatccaatgggatggacgaaatggtcttctgatgatgataaagggttggacactttgtattatggtgagtttgca |
51548476 |
T |
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| Q |
587 |
aattatggacctggttcaaagattgataatcgtgttgaatgggttggttatcatttgatggattataatgatgcttataatttcagtgtttctgagttta |
686 |
Q |
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| T |
51548477 |
aattatggacctggttctgcgacggataaccgagtaaaatggttagggtatcatttaatggattttgatagtgcaaataatttcactgtttcagagttta |
51548576 |
T |
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| Q |
687 |
ttattggtgatcaatggcttgagtctacttcagttccttatgatgatggaatttga |
742 |
Q |
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|||| |||||| ||| ||| |||||||| ||||||||||||| || |||||| |
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| T |
51548577 |
ttatcggtgatgcttggattggttctacttcttttccttatgatgacgggatttga |
51548632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 44488676 - 44488627
Alignment:
| Q |
230 |
gaatgcgacatttacgggacaatagatttcatatttggtaactccgcagt |
279 |
Q |
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|||||||||||||| || ||||||||||| |||||||| ||| ||||||| |
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| T |
44488676 |
gaatgcgacatttatggaacaatagattttatatttggaaacgccgcagt |
44488627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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