View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774-Insertion-13 (Length: 674)
Name: NF4774-Insertion-13
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Complemental strand, 36609500 - 36609013
Alignment:
| Q |
8 |
atatatatggttatggtaattgtcaataatataataatgaaaatggtgaaaacatatgaagagagttaaaagagggtgatagttatgagnnnnnnnnnnn |
107 |
Q |
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| T |
36609500 |
atatatatggttatggtaattgtcaataatataataatgaaaatggtgaaaacatatgaagagagttaaaagaggatgataattatgagaaaaacaaaaa |
36609401 |
T |
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| Q |
108 |
ncaattggaatgaatagaagtatgaggtgtagtgatggagcaaagttagcaattaggaaacgttgccgggtccaactgagatggcctatgaatcctccta |
207 |
Q |
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| T |
36609400 |
acaattggaatgattagaagtatgaggtgtagtgatggagcaaagttagcaattaggaaacgttgccgggtccaactgagatggcctatgaatcctccta |
36609301 |
T |
|
| Q |
208 |
aaatggcacattgccatttttcttccacannnnnnnnaaagattatcctcatcctcactttcttttattggttactactcccagttggcttgtcttagat |
307 |
Q |
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| T |
36609300 |
aaatggcacattgccatttttcttccacattttttttaaagattatcctcatcctcactttcttttattggtt-ctactcccagttggcttgtcttcgat |
36609202 |
T |
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| Q |
308 |
taaagggtatgtgtgcatgcaataaggtatatgtttatatgctgtaaatcatctaaaccgttaatctgagatcacaaaattaattttaaacgatcttgat |
407 |
Q |
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| T |
36609201 |
taaagggtgtgtgtgcgagggacaaagtacatgtttatacgttctaaatcatctaaaccgttaatttgagatcacaaaattaattttaaacgatcttgat |
36609102 |
T |
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| Q |
408 |
cacaagatcaaaaaggtcgaacgtggtaattagagatgtgtttagataaacttttcaattagacctatttatagattgatcagtggtgtg |
497 |
Q |
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| T |
36609101 |
caca-gatcaaaaaggtcgaacgtggtaattagagatgtgtttggataaacttttcaattagacctatttatagattgatcagtggtgtg |
36609013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 662
Target Start/End: Complemental strand, 36608956 - 36608849
Alignment:
| Q |
555 |
ggccaatttctcaaaaatatctactatttgcttcatttccaaagagatatcatnnnnnnntagaaatttgaatactttggatttttaatcatcttcatct |
654 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
36608956 |
ggccaatttctcaaaaatatctactatttgcttcatttccaaagagatatcataaaaaaatagaaatttgaatactttgtatttttaatcatcttcatct |
36608857 |
T |
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| Q |
655 |
cttccttc |
662 |
Q |
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|||||||| |
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| T |
36608856 |
cttccttc |
36608849 |
T |
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