View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774-Insertion-14 (Length: 667)
Name: NF4774-Insertion-14
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774-Insertion-14 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 329 - 533
Target Start/End: Complemental strand, 1768120 - 1767916
Alignment:
| Q |
329 |
ggctctgataatctatagttcgatcagaatgtaacaatgaacttatagtactaggtgactcaaaaattccatttaacatatttgtcatttgtgtattagg |
428 |
Q |
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| T |
1768120 |
ggctctgataatctatagttcgatcagaatgtaacaatgaacttatagtactaggtgactcaaaaattccatttaacatatttgtcatttgtgtattagg |
1768021 |
T |
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| Q |
429 |
tgactggaaggttgatggagtgagtggaaaagttaagtagctagtttgacaagttgaagcaaaaaatcacggttagcttgtaatttgaaactttcccttt |
528 |
Q |
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| T |
1768020 |
tgactggaaggttgatggagtgagtggaaaagttaagtagctagtttgacaagttgaagcaaaaaatcacggttagcttgtaatttgaaactttcccttt |
1767921 |
T |
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| Q |
529 |
ttctc |
533 |
Q |
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||||| |
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| T |
1767920 |
ttctc |
1767916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 1768434 - 1768141
Alignment:
| Q |
8 |
gaagcttcattcataattttgagnnnnnnnnngtgtgtgcatattataagaaaaattcgaaaaattacaaccnnnnnnngttgtcacctcttgagtcttg |
107 |
Q |
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| T |
1768434 |
gaagcttcattcataattttgagtttttttttgtgtgtgcatattataagaaaaattctaaaaattacaacctttttttgttgtcacctcttgagtcttg |
1768335 |
T |
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| Q |
108 |
atataggaaattcttctgcttctagaactgtaattaaatgtagcaagacattggatgcaccaattttcctcagtttctttatggtacaaaatatctgccn |
207 |
Q |
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| T |
1768334 |
atataggaaattcttctgcttctagaaatgtaattaaatgtagcaagacattggatgcaccaattttcctcagtttctttatggtacaaaatatctgcca |
1768235 |
T |
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| Q |
208 |
nnnnnnnntgtaaactataaataaaccacaagaaagagtgagctttttctcctctttaactttttggttcttagaagacaagagctctaataat |
301 |
Q |
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| T |
1768234 |
aaaaaaaatgtaaactataaataaaccacaagaaagagtgagctttttctcgtctttaactttttggttcttagaagacaagagctctgataat |
1768141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 527
Target Start/End: Complemental strand, 1765597 - 1765480
Alignment:
| Q |
406 |
atatttgtcatttgtgtattaggtgactggaaggttgatggagtgagtggaaaagttaagtagctagtttgacaagttgaagc-aaaaaatcacggttag |
504 |
Q |
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| T |
1765597 |
atattggtcatttgtgtattaggtgaatggaatgtcgatggagtgggtggca-----aggtaactagtttgacaagtggaagcaaaaaaagtacggttag |
1765503 |
T |
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| Q |
505 |
cttgtaatttgaaactttccctt |
527 |
Q |
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| T |
1765502 |
ctactaatttgaaacttttcctt |
1765480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 650
Target Start/End: Complemental strand, 1767882 - 1767834
Alignment:
| Q |
601 |
taaacatgagtttaaaaataatacataagaagtattaattggttcttgtt |
650 |
Q |
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| T |
1767882 |
taaacatgagtttaaaaataatacataag-agtattaactggttcttgtt |
1767834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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