View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774-Insertion-15 (Length: 605)
Name: NF4774-Insertion-15
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774-Insertion-15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 7 - 605
Target Start/End: Original strand, 40221974 - 40222572
Alignment:
| Q |
7 |
agtggtcccttgtagttcccatcgttttcactcataagaatacgcccaaatgccatggttgattcagatagaagaagagtggtcacaggttgatccaggt |
106 |
Q |
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| T |
40221974 |
agtggtcccttgtagttcccatcgttttcactcataagaatacgcccaaatgccatggttgattcagatagaagaagagtggtcacaggttgatccagat |
40222073 |
T |
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| Q |
107 |
gcggtggtttcaggaatggctgagaaaactccccctaaaaaatataacaatatttctaaatggttatttcactacacactacaaatgatcacagactann |
206 |
Q |
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| T |
40222074 |
gcggtggtttcaggaatggctgagaaaactccccctaaaaaatataacaatatttctaaatggttatttcactacacactacaaatgatcacagactatt |
40222173 |
T |
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| Q |
207 |
nnnnnngaagaggatgatcagagactattacaaggtagaataactttaaaaggagtggtaagagagaaatggtacaaaatttacctcttcaaaaaagttg |
306 |
Q |
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| T |
40222174 |
ttttttgaagaagatgatcagagactattacaaggtagaataactttaaaaggagtggtaagagagaaatggtacaaaatttacctcttcaaaaaagttg |
40222273 |
T |
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| Q |
307 |
atgatacaaccatttggtcttttgtactccggaagtaaatgccattgaataaagtgatcaataacacgctgcagaagtgccggaattggctctatattac |
406 |
Q |
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| T |
40222274 |
atgatacaaccatttggtcttttgtactccggaagtaaatgccattgaataaagtgatcaataacacgctgcagaagtgccggaattggctctatattac |
40222373 |
T |
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| Q |
407 |
ctgnnnnnnnnnnnnnnnnnnnnnnnnncagaattacagagcatatctctagtttagaatcatcatttatgcaatatttgagatcataagaatgagattg |
506 |
Q |
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| T |
40222374 |
ctgaaaacgaaaatccaaaatgaaaaaacagaattacagagcatatctctagtttagaatcatcatttatgcaatatttgagatcataagaatgagattg |
40222473 |
T |
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| Q |
507 |
tacttatattaaggtaaagtaaaactacttgataaatcaaaatttcttcaataaattcttcttactttttgtgtcctcctttatctgtccaaatattgg |
605 |
Q |
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| T |
40222474 |
tacttatattaaggtaaagtaaaactacttgataaatcaaaatttcttcaataaattcttcttactttttgtgtcctcctttatctgtccaaatattgg |
40222572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 37508735 - 37508870
Alignment:
| Q |
7 |
agtggtcccttgtagttcccatcgttttcactcataagaatacgcccaaatgccatggttgattcagatagaagaagagtggtcacaggttgatccaggt |
106 |
Q |
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| T |
37508735 |
agtggacctttgtaattcccatcattttcactcataagaatacgcccaaaagccattgtagattctgagagaagaagggtagatagaggttgatccacat |
37508834 |
T |
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| Q |
107 |
gcggtggtttcaggaatggctgagaaaactccccct |
142 |
Q |
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| T |
37508835 |
gtggtggtttgaagaatggctgagaaaactccccct |
37508870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 37508973 - 37509020
Alignment:
| Q |
284 |
aatttacctcttcaaaaaagttgatgatacaaccatttggtcttttgt |
331 |
Q |
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| T |
37508973 |
aatttacctcatcaaagaagttgatgatgcaaccatttggccttttgt |
37509020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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