View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774-Insertion-18 (Length: 406)
Name: NF4774-Insertion-18
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774-Insertion-18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 34887967 - 34887582
Alignment:
| Q |
8 |
cccaaaagctgcatctctcacaaaaaccggatgatttattgtcactaaactaacccaaacacattcttaaaatctttatactatattattaaagnnnnnn |
107 |
Q |
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| T |
34887967 |
cccaaaagctgcatctctcacaaaaaccggatgatttattgtcactaaactaacccaaacacattcttaaaatctttatactatattattaaagaaaaaa |
34887868 |
T |
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| Q |
108 |
nnnctaaaatccttatcacatccctactaatttcgctagtttcttcttctttttgaatctttgcttgaactttaatcaacttaatgaatcaataagtcca |
207 |
Q |
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| T |
34887867 |
aa-ctaaaatccttatcacaaccctactaatttcactagtttcttcttcttttcgaatctttgcttgaactttaatcaacttaatgaatcaataagtcca |
34887769 |
T |
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| Q |
208 |
ttcttgaggcaaacgactttcataactagctgcctcttctctttgcatccttaatctttgctgcatcaatagagcatttcttcttgccaacaaagcatct |
307 |
Q |
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| T |
34887768 |
ttcttgaggcaaacgactttcataactagctgcctcttctctttgcatccttaatctttgctgcatcaatagagcatttcttcttgccaacaaagcatct |
34887669 |
T |
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| Q |
308 |
acaattaaataaccccaaaaattcaaaatcaaaactttacacttcaattaatataacaaaattaagtttgattaaatttttctcattatatactaactc |
406 |
Q |
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| T |
34887668 |
acaattaaataaccccaaaaattcaaaatcaaaactttacactt------------caaaattaagtttaattaaatttttctcattataaactaactc |
34887582 |
T |
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