View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4774-Insertion-2 (Length: 973)

Name: NF4774-Insertion-2
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4774-Insertion-2
NF4774-Insertion-2
[»] chr6 (5 HSPs)
chr6 (8-970)||(9824858-9825821)
chr6 (8-321)||(9819816-9820141)
chr6 (404-634)||(9819505-9819727)
chr6 (65-321)||(9703873-9704135)
chr6 (756-797)||(426590-426631)
[»] chr5 (4 HSPs)
chr5 (61-194)||(6401892-6402016)
chr5 (485-532)||(23769422-23769469)
chr5 (485-532)||(23819270-23819317)
chr5 (490-532)||(23644660-23644702)
[»] chr3 (22 HSPs)
chr3 (703-803)||(52369731-52369828)
chr3 (490-537)||(1890829-1890876)
chr3 (261-306)||(771501-771546)
chr3 (486-523)||(783590-783627)
chr3 (261-306)||(2456253-2456298)
chr3 (261-306)||(4142136-4142181)
chr3 (261-306)||(4157946-4157991)
chr3 (491-532)||(12218279-12218320)
chr3 (65-97)||(7432268-7432300)
chr3 (488-524)||(43992209-43992245)
chr3 (490-537)||(1889363-1889410)
chr3 (490-537)||(1897442-1897489)
chr3 (490-537)||(1906888-1906935)
chr3 (496-543)||(7427352-7427399)
chr3 (486-525)||(13526843-13526882)
chr3 (224-306)||(1891066-1891148)
chr3 (127-185)||(2459145-2459203)
chr3 (486-523)||(1438232-1438269)
chr3 (261-306)||(3754604-3754649)
chr3 (261-306)||(9608346-9608391)
chr3 (261-306)||(13498228-13498273)
chr3 (666-746)||(45451562-45451642)
[»] chr2 (2 HSPs)
chr2 (128-188)||(7156321-7156381)
chr2 (261-306)||(7168692-7168737)
[»] chr1 (5 HSPs)
chr1 (128-187)||(25478733-25478792)
chr1 (749-795)||(47989442-47989488)
chr1 (128-187)||(25869302-25869361)
chr1 (485-544)||(51377907-51377966)
chr1 (128-189)||(24242979-24243040)
[»] scaffold0044 (2 HSPs)
scaffold0044 (257-306)||(89143-89192)
scaffold0044 (486-532)||(89390-89436)
[»] scaffold0015 (2 HSPs)
scaffold0015 (261-306)||(32331-32376)
scaffold0015 (261-306)||(40383-40428)
[»] chr7 (2 HSPs)
chr7 (259-306)||(3927061-3927108)
chr7 (127-188)||(1078298-1078359)
[»] chr4 (1 HSPs)
chr4 (756-797)||(40774223-40774264)


Alignment Details
Target: chr6 (Bit Score: 776; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 8 - 970
Target Start/End: Complemental strand, 9825821 - 9824858
Alignment:
Q  8 acttcttggagattgatagatgagtttcctt------gtttcggtgacttctcaattggatcaggaaaatttgtaagtggcacaattaattggttggtat 101  Q
    |||||||||||||||||||||||||||||||      |||||||||| || ||| || || |||||||||||||||||||||||||||||||||||||||    
T  9825821 acttcttggagattgatagatgagtttccttctggaagtttcggtgaattttcagttcgaccaggaaaatttgtaagtggcacaattaattggttggtat 9825722  T
Q  102 ttaatcgtgattcaactttgtggtctattgtttcttttgatttggggacagagtcctatcaagagattttgcagcctgattatggagaagaaacggtaga 201  Q
    |||| | | ||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9825721 ttaaacataattcaactttgtgctccattgtttctcttgatttggggacagagtcctatcaagagattttgcagcctgattatggagaagaaacggtaga 9825622  T
Q  202 aaagattaggaccttgggggttttgagggattgcttgagccttattagtggacaagatatttggcttatgaaggaatatggaaatagaaactcttggact 301  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9825621 aaggattaggaccttgggggttttgagggattgcttgagccttattagtggacaagatatttggcttatgaaggaatatggaaatagaaactcttggact 9825522  T
Q  302 aaatttgcaactgttcctcaaggttcttcttttaatcgtgaaatactttatactactgaggatgatgaagtgctgctggagattataatgcacttgtcca 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9825521 aaatttgcaactgttcctcaaggttcttcttttaatcgtgaaatactttatactactgaggatgatgaagtgctgctggagattataatgcacttgtcca 9825422  T
Q  402 ggtcgaggttggtggtttacgattccacaaatgatactttgaagagtcttgatattaagaccaatggcaatgggaggctctcgatctacgttgagagttt 501  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9825421 ggtcgaagttgatggtttacgattccacaaatgatactttgaagagtcttgatattaagaccaatggcaatgggaggctctcgatctatgttgagagttt 9825322  T
Q  502 gatatcgccttgttcttaatgttagtatgtacatgttttgttataccatctgtgcattatattcaactgcaacttaatgtcaaactgcagttcatgctgt 601  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9825321 gatatcgccttgttcttaatgttagtatgtacatattttgttataccatctgtgcattatattcaactgcaacttaatgtcaaactgcagttcatgctgt 9825222  T
Q  602 gtatgttatgtattttttctaatcaatggtaacctgtgaagcaaaggacactcggtcaactaggtgtgtctcgatgtcggacatgtgtcggtgtcctaga 701  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9825221 gtgtgttatgtattttttctaatcaatggtaacctgtgaagc-aaggacactcggtcaactaggtgtgtcgcgatgtcggacatgtgtcggtgtcctaga 9825123  T
Q  702 ccgacacctatgattacattaagtatgttattttcttaaattattttgtgtctttgtcgtgtctggtatccgtgtctgtttccttgcttcatagatggta 801  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9825122 ccgacacctatgattacattaagtatgttattttcttaaattattttgtgtctttgtcgtgtctggtatccgtgtctgtgtccttgcttcatagatggta 9825023  T
Q  802 acttaacacgatcgttgttaaattgttgtgtttaattactaatctctatatcctttataccgatttgtttagttgggtccatttttatgtcaaagttagg 901  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  9825022 acttaacacgatcgttgttaaattgttgtgttt-attactaatctctatatcc-ttataccgatttgtttagtt-ggtcca-ttttatgtcaaagttagg 9824927  T
Q  902 aaggcgtcaaaatgcaatacgtagaatcttattaattaagtta-tattcacttctg-aaaaactgtgtttg 970  Q
    |||||   |||||||||| ||||  |||||||||| ||||||| ||||||| |||| ||||||||||||||    
T  9824926 aaggctcaaaaatgcaattcgtaagatcttattaa-taagttattattcac-tctgaaaaaactgtgtttg 9824858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 9820141 - 9819816
Alignment:
Q  8 acttcttggagattgatagatgagtttcctt------gtttcggtgacttctcaattggatcaggaaaatttgtaagtggcacaattaattggttggtat 101  Q
    |||||||||||||||||||||||||||||||      |||||||||| || ||| || || | |||||||||||||||||||||||||||||||||||||    
T  9820141 acttcttggagattgatagatgagtttccttctggaagtttcggtgaattttcagttcgaccgggaaaatttgtaagtggcacaattaattggttggtat 9820042  T
Q  102 ttaatcgtgattcaactttgtggtctattgtttcttttgatttggggacagagtcctatcaagagattttgcagcctgattatggagaagaaacggtaga 201  Q
    |||| | ||||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||| |    
T  9820041 ttaaacatgattcaactttgtgctccattgtttctcttgatttggggagagagtcctatcaagagattttgcagcctgattatggagaagaaggggtaaa 9819942  T
Q  202 aaagattag------gaccttgggggttttgagggattgcttgagccttattagtggacaagatatttggcttatgaaggaatatggaaatagaaactct 295  Q
    || | ||||      || |||||  |||||||||||||||||| || |  || ||||||  ||||||||||||||||||||||||||||||||| |||||    
T  9819941 aatggttagaatctcgaacttggcagttttgagggattgcttgtgcatccttcgtggacgggatatttggcttatgaaggaatatggaaatagagactct 9819842  T
Q  296 tggactaaatttgcaactgttcctca 321  Q
    |||||||||||||| |||||||||||    
T  9819841 tggactaaatttgccactgttcctca 9819816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 404 - 634
Target Start/End: Complemental strand, 9819727 - 9819505
Alignment:
Q  404 tcgaggttggtggtttacgattccacaaatgatactttgaagagtcttgatattaagaccaatggcaatgggaggctctcgatctacgttgagagtttga 503  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||||| | || |      |||||| | ||| ||||||||||||||||    
T  9819727 tcgaagttgatggtttacgattccataaatgatactttgaagagtctagatattaagatccattg------gaggctgttgatttacgttgagagtttga 9819634  T
Q  504 tatcgccttgttcttaatgttagtatgtacatgttttgttataccatctgtgcattatattcaactgcaacttaatgtcaaactgcagttcatgctgtgt 603  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| | |||||||||| | |||||||||||||    
T  9819633 tatcaccttgttcttaatgttagtatgtacttgttttgctataccatttgtgctttatattcaactgcaacatcatgtcaaacttcggttcatgctgtgt 9819534  T
Q  604 atgttatgtattttttctaatcaatggtaac 634  Q
    || |||||  ||||| || ||||||||||||    
T  9819533 atattatg--tttttcctgatcaatggtaac 9819505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 65 - 321
Target Start/End: Complemental strand, 9704135 - 9703873
Alignment:
Q  65 ggaaaatttgtaagtggcacaattaattggttggtatttaatcg-tgattca---actttgtggtctattgtttcttttgatttggggacagagtcctat 160  Q
    ||||||||||||||||||| | ||||||||||||||| |  ||| ||||||    ||| ||||| | ||||||||| |||| || |||||||||||||||    
T  9704135 ggaaaatttgtaagtggcaaacttaattggttggtatgtc-tcgatgattcggtgactgtgtggcccattgtttctcttgacttagggacagagtcctat 9704037  T
Q  161 caagagattttgcagcctgattatggagaagaaacggtagaaaagattagg------accttgggggttttgagggattgcttgagccttattagtggac 254  Q
    |||||||||||||| ||||||| ||||||||  |   |||||| | |||        ||||||||||||||||||||||||||| ||||  || ||||||    
T  9704036 caagagattttgcaacctgattgtggagaaggga---tagaaatggttaattcgtcaaccttgggggttttgagggattgcttgtgcctccttcgtggac 9703940  T
Q  255 aagatatttggcttatgaaggaatatggaaatagaaactcttggactaaatttgcaactgttcctca 321  Q
    ||||||||||||||||||||||||||||||||||| | | |||||||||||| || |||||||||||    
T  9703939 aagatatttggcttatgaaggaatatggaaatagagatttttggactaaattcgccactgttcctca 9703873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 797
Target Start/End: Original strand, 426590 - 426631
Alignment:
Q  756 tgtcgtgtctggtatccgtgtctgtttccttgcttcatagat 797  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||    
T  426590 tgtcgtgtccggtatccgtgtctgtatccatgcttcatagat 426631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 6402016 - 6401892
Alignment:
Q  61 atcaggaaaatttgtaagtggcacaattaattggttggtatttaatcgtgattcaactttgtggtctattgtttcttttgatttggggacagagtcctat 160  Q
    |||||||||||||||||||||||||||||||||||| |||| |  | ||||||         |||| ||||||||| |||||||| |||||| |||||||    
T  6402016 atcaggaaaatttgtaagtggcacaattaattggttagtatgtcgtggtgatt---------ggtccattgtttctcttgatttgaggacagtgtcctat 6401926  T
Q  161 caagagattttgcagcctgattatggagaagaaa 194  Q
    ||| | ||| |||  |||||||||||||||||||    
T  6401925 caacaaattctgcctcctgattatggagaagaaa 6401892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 23769469 - 23769422
Alignment:
Q  485 atctacgttgagagtttgatatcgccttgttcttaatgttagtatgta 532  Q
    |||| |||||| ||||||||||| |||||||||||||||||| |||||    
T  23769469 atctgcgttgaaagtttgatatcaccttgttcttaatgttagaatgta 23769422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 23819317 - 23819270
Alignment:
Q  485 atctacgttgagagtttgatatcgccttgttcttaatgttagtatgta 532  Q
    |||| |||||| ||||||||||| |||||||||||||||||| |||||    
T  23819317 atctgcgttgaaagtttgatatcaccttgttcttaatgttagaatgta 23819270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 23644660 - 23644702
Alignment:
Q  490 cgttgagagtttgatatcgccttgttcttaatgttagtatgta 532  Q
    |||||| ||||||||||| |||||||||||||||||| |||||    
T  23644660 cgttgaaagtttgatatcaccttgttcttaatgttagaatgta 23644702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 703 - 803
Target Start/End: Complemental strand, 52369828 - 52369731
Alignment:
Q  703 cgacacctatgattacatt-aagtatgttattttcttaaattattttgtgtctttgtcgtgtctggtatccgtgtctgtttccttgcttcatagatggta 801  Q
    ||||||||||||||||||| || ||||| ||||||| |||||||| |    |  ||||||||| ||| ||||||||||| ||| ||||||||||||||||    
T  52369828 cgacacctatgattacattgaattatgtaattttctcaaattattat----ccatgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatagatggta 52369733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 490 - 537
Target Start/End: Complemental strand, 1890876 - 1890829
Alignment:
Q  490 cgttgagagtttgatatcgccttgttcttaatgttagtatgtacatgt 537  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  1890876 cgttgagagtttgatatcgccttgttcttaatgctagaatgtagatgt 1890829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 771546 - 771501
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||    
T  771546 tttgggttatgaaggaatatggaaatacagactcttggactaaatt 771501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 523
Target Start/End: Complemental strand, 783627 - 783590
Alignment:
Q  486 tctacgttgagagtttgatatcgccttgttcttaatgt 523  Q
    |||||||||||||||||||||| |||||||||||||||    
T  783627 tctacgttgagagtttgatatcaccttgttcttaatgt 783590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 2456253 - 2456298
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||    
T  2456253 tttgggttatgaaggaatatggaaataaagactcttggactaaatt 2456298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 4142181 - 4142136
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||    
T  4142181 tttggcttatgaaggaatatggaaataaagagtcttggactaaatt 4142136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 4157991 - 4157946
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||    
T  4157991 tttggcttatgaaggaatatggaaataaagagtcttggactaaatt 4157946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 12218279 - 12218320
Alignment:
Q  491 gttgagagtttgatatcgccttgttcttaatgttagtatgta 532  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  12218279 gttgagagtttgatatcaccttgttcttaatgttaggatgta 12218320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 7432300 - 7432268
Alignment:
Q  65 ggaaaatttgtaagtggcacaattaattggttg 97  Q
    |||||||||||||||||||||||||||||||||    
T  7432300 ggaaaatttgtaagtggcacaattaattggttg 7432268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 488 - 524
Target Start/End: Original strand, 43992209 - 43992245
Alignment:
Q  488 tacgttgagagtttgatatcgccttgttcttaatgtt 524  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43992209 tacgttgagagtttgatatcaccttgttcttaatgtt 43992245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 537
Target Start/End: Complemental strand, 1889410 - 1889363
Alignment:
Q  490 cgttgagagtttgatatcgccttgttcttaatgttagtatgtacatgt 537  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| ||||    
T  1889410 cgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgt 1889363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 537
Target Start/End: Complemental strand, 1897489 - 1897442
Alignment:
Q  490 cgttgagagtttgatatcgccttgttcttaatgttagtatgtacatgt 537  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| ||||    
T  1897489 cgttgagagtttgatatcaccttgttcttaatgctagaatgtaaatgt 1897442  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 537
Target Start/End: Complemental strand, 1906935 - 1906888
Alignment:
Q  490 cgttgagagtttgatatcgccttgttcttaatgttagtatgtacatgt 537  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| ||||    
T  1906935 cgttgagagtttgatatcaccttgttcttaatgctagaatgtaaatgt 1906888  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 543
Target Start/End: Complemental strand, 7427399 - 7427352
Alignment:
Q  496 gagtttgatatcgccttgttcttaatgttagtatgtacatgttttgtt 543  Q
    |||||||||||| |||||||||||||||||| ||||| || |||||||    
T  7427399 gagtttgatatcaccttgttcttaatgttaggatgtagattttttgtt 7427352  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 525
Target Start/End: Original strand, 13526843 - 13526882
Alignment:
Q  486 tctacgttgagagtttgatatcgccttgttcttaatgtta 525  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  13526843 tctacgttgagagtttgatatcaccttgttcttaacgtta 13526882  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 1891148 - 1891066
Alignment:
Q  224 ttgagggattgcttgagccttattagtggacaagatatttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||||||||| ||| ||||  ||  ||| || ||| ||||| ||||||||||| ||||||||| | ||||||||||||||||    
T  1891148 ttgagggattgtttgtgcctggtttttggtcatgatgtttggattatgaaggaacatggaaataaagactcttggactaaatt 1891066  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 2459145 - 2459203
Alignment:
Q  127 tattgtttcttttgatttggggacagagtcctatcaagagattttgcagcctgattatg 185  Q
    |||||||||| | ||||||||||  || || ||||||||||||||||||||||| ||||    
T  2459145 tattgtttctctcgatttggggaatgaatcttatcaagagattttgcagcctgagtatg 2459203  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 523
Target Start/End: Original strand, 1438232 - 1438269
Alignment:
Q  486 tctacgttgagagtttgatatcgccttgttcttaatgt 523  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  1438232 tctacgttgagagtttgatatcaccttgtttttaatgt 1438269  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 3754604 - 3754649
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||| ||||||||||||||||||||| | | ||||||||||||||    
T  3754604 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 3754649  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 9608391 - 9608346
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||| ||||||||||||||||||||| | | ||||||||||||||    
T  9608391 tttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 13498228 - 13498273
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||| ||||||||||||||||||||| | | ||||||||||||||    
T  13498228 tttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 746
Target Start/End: Complemental strand, 45451642 - 45451562
Alignment:
Q  666 tgtgtctcgatgtcggacatgtgtcggtgtcctagaccgacacctatgattaca-ttaagtatgttattttcttaaattatt 746  Q
    ||||||||| ||||||||||||||| |||||| | |||||||| ||| |||| | | |||||||| ||||||| ||||||||    
T  45451642 tgtgtctcggtgtcggacatgtgtc-gtgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattatt 45451562  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 7156381 - 7156321
Alignment:
Q  128 attgtttcttttgatttggggacagagtcctatcaagagattttgcagcctgattatggag 188  Q
    ||||||||||||||||||| ||| ||||| | || |||||| |||||||||||||||||||    
T  7156381 attgtttcttttgatttggagacggagtcttttcgagagatattgcagcctgattatggag 7156321  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 7168737 - 7168692
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    |||||||||||||||||||||||||||   | ||||||||||||||    
T  7168737 tttggcttatgaaggaatatggaaataacgattcttggactaaatt 7168692  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 25478733 - 25478792
Alignment:
Q  128 attgtttcttttgatttggggacagagtcctatcaagagattttgcagcctgattatgga 187  Q
    ||||||||| || ||||||||| |||||| |||||||||||||  |||||||||||||||    
T  25478733 attgtttctcttcatttggggaaagagtcttatcaagagatttcacagcctgattatgga 25478792  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 749 - 795
Target Start/End: Complemental strand, 47989488 - 47989442
Alignment:
Q  749 gtgtctttgtcgtgtctggtatccgtgtctgtttccttgcttcatag 795  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  47989488 gtgtctgtgtcgtgtctggtatccgtgtctgtatccatgcttcatag 47989442  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 25869361 - 25869302
Alignment:
Q  128 attgtttcttttgatttggggacagagtcctatcaagagattttgcagcctgattatgga 187  Q
    ||||||||| || ||||||| | ||||||||||||||| ||||  |||||||||||||||    
T  25869361 attgtttctcttcatttgggaaaagagtcctatcaagacatttcacagcctgattatgga 25869302  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 51377966 - 51377907
Alignment:
Q  485 atctacgttgagagtttgatatcgccttgttcttaatgttagtatgtacatgttttgtta 544  Q
    |||||||||||||||||||| || |||| |||| ||| |||| ||||| |||||||||||    
T  51377966 atctacgttgagagtttgatctcacctttttctcaatattaggatgtagatgttttgtta 51377907  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 24243040 - 24242979
Alignment:
Q  128 attgtttcttttgatttggggacagagtcctatcaagagattttgcagcctgattatggaga 189  Q
    ||||||||| |||||||||||| ||| || || ||||| ||||  |||||||||||||||||    
T  24243040 attgtttctcttgatttggggaaagaatcttaccaagatatttcacagcctgattatggaga 24242979  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 89143 - 89192
Alignment:
Q  257 gatatttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||||||| ||||||||||||||||||||| | | ||||||||||||||    
T  89143 gatatttgggttatgaaggaatatggaaataaagagtcttggactaaatt 89192  T

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Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 486 - 532
Target Start/End: Original strand, 89390 - 89436
Alignment:
Q  486 tctacgttgagagtttgatatcgccttgttcttaatgttagtatgta 532  Q
    ||||| |||||||||||||||| |||||||||||| ||||| |||||    
T  89390 tctacattgagagtttgatatcaccttgttcttaacgttaggatgta 89436  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 32376 - 32331
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||    
T  32376 tttggcttatgaaggaatatggaaataaagactcttggattaaatt 32331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 40428 - 40383
Alignment:
Q  261 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||||||    
T  40428 tttggcttatgaaggaatatgaaaataaagactcttggattaaatt 40383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 3927061 - 3927108
Alignment:
Q  259 tatttggcttatgaaggaatatggaaatagaaactcttggactaaatt 306  Q
    ||||||| |||||||||| |||||||||| ||| ||||||||||||||    
T  3927061 tatttgggttatgaaggattatggaaataaaaattcttggactaaatt 3927108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 1078359 - 1078298
Alignment:
Q  127 tattgtttcttttgatttggggacagagtcctatcaagagattttgcagcctgattatggag 188  Q
    ||||||||||||||||||||| | ||| || |||||| || ||||||  |||||||||||||    
T  1078359 tattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggag 1078298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 797
Target Start/End: Complemental strand, 40774264 - 40774223
Alignment:
Q  756 tgtcgtgtctggtatccgtgtctgtttccttgcttcatagat 797  Q
    ||||||||||||||||||||||||| ||| || |||||||||    
T  40774264 tgtcgtgtctggtatccgtgtctgtatccgtgtttcatagat 40774223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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