View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4774-Insertion-20 (Length: 285)

Name: NF4774-Insertion-20
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4774-Insertion-20
NF4774-Insertion-20
[»] chr4 (1 HSPs)
chr4 (8-285)||(40125998-40126275)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 40125998 - 40126275
Alignment:
Q  8 cgaatcatgcttccaaaagaaaatgttggtataacatctctactattgttactggatgatgaggattgagagtccctgtatggagaactttgagccaaaa 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40125998 cgaatcatgcctccaaaagaaaatgttggtataacatctctactattgttactggatgatgaggattgagagtccctgtatggagaactttgagccaaaa 40126097  T
Q  108 caattgacccaccaatttctctttttatcaactctactatattttcattcacatcttgacctgaacaacctgtaacatagaatgatcctattgctgcttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40126098 caattgacccaccaatttctctttttatcaactctactatattttcattcacatcttgacctgaacaacctgtaacatagagtgatcctattgctgcttc 40126197  T
Q  208 accctctactccaaactcaattcttgttatggataatccattctcatgaaatactcgtgtcaccttcgatagtagccc 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  40126198 accctctactccaaactcaattcttgttatggataatccattctcatgaattacttgtgtcaccttcgatagtagccc 40126275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University