View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4774-Insertion-6 (Length: 937)
Name: NF4774-Insertion-6
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 43175677 - 43175252
Alignment:
| Q |
8 |
tgtatgacctaacctatttgttagatgatatacaagtactcttcttaatattttatgagcttagaaatatgctttatcccacctatgggcggagcaaaac |
107 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43175677 |
tgtatgacctaacatatttgttagacgatatacaagtactcttcttaatattttatgagctttgaaatatgctttatcccacctatgggcggagcaaaac |
43175578 |
T |
|
| Q |
108 |
ataaattatagtgagggtaaannnnnnngtctaagaattaaattatgttaaatttactaaaaagttatactaaaaatatagtggttacaactaaatttta |
207 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43175577 |
ataaattatagtgagggtaaatttttttgtctaagaattaaattatgttaaatttactaaaaagttatactaaaaatatagtggttacaactaaa-ttta |
43175479 |
T |
|
| Q |
208 |
taaagtaaatagtatatcttccattcgttcaaaaatgagctaaaataacaccattattaattgtttcaagaacatatctttctatnnnnnnnnnttaaga |
307 |
Q |
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| T |
43175478 |
taaagtaaatagtatatcttccattcgttcaaaaatgagctaaaataacaccattattaattgtttcaagaacatatctttctat--aaaaaaattaaga |
43175381 |
T |
|
| Q |
308 |
tgatcatctaaccattaatcatccatcttattacatggttgacttttcacatgagaaaaacatgttctaacagttgccactatgggtgaatccatcccat |
407 |
Q |
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| T |
43175380 |
tgatcatctaaccattaatcatccatcttattacatggttgacttttcacatgagaaaaacatgttctaaaagttgccactatgggtgaatccatcccat |
43175281 |
T |
|
| Q |
408 |
tgcttgtgtgtgactatatccacgcaaga |
436 |
Q |
| |
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|
| T |
43175280 |
ggcttgtgtgtgactatatccacgcaaga |
43175252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 500 - 937
Target Start/End: Complemental strand, 43175199 - 43174771
Alignment:
| Q |
500 |
aaaacaagattagggttgcaaatagatttggactactaaactacattataaatcataaacatcaattattcaattaatttttaaaaagtaagatttgttt |
599 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43175199 |
aaaaaaaggttagggttgcaaatagatttggactactaaactacattataaatcataaacatcaattattcaattaatttttaaaaagtaatatttgttt |
43175100 |
T |
|
| Q |
600 |
ataatagtgagtaggagaaagtgacnnnnnnnnaagagcggaccatcaaatttgtctcctactctttaggacggtcctcatgtacatctctagtattatg |
699 |
Q |
| |
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||||||| |||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
43175099 |
ataatagcgagtag-agaaagtgacttttctttaagagcggaccatcaaattcg-ctcctactctttaggacgttc-tcatgtacatctctagtattatg |
43175003 |
T |
|
| Q |
700 |
aatatttcaaattggtcctataatatctgctagtatcaatttgggtccctataatataaacttcctagcaatggtatctctaaattttaccatcgaattt |
799 |
Q |
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| T |
43175002 |
aatatttcaaattggtcctataatatctgctagtatcaatttgg-tccctataatataaacttcctagcaatggtatctctaaattt-accatcgaattt |
43174905 |
T |
|
| Q |
800 |
tgcataatatatccaagtgcaacatactctatacaaaacgacccaacatatttaaaacaaaactagtaaaattcaaaagccaaatgtaacagtagaaata |
899 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
43174904 |
tgcataatatatccaagtgcaacatactctatacaaaacgacccaacatatttaaaacaaaactagtaaaa-tcaaaagccaaatgtaacagtaaaaata |
43174806 |
T |
|
| Q |
900 |
tcatatataaacatgggcaataaaacccaataaaacca |
937 |
Q |
| |
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||||| || ||||| |||||||||| |||||||||||| |
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|
| T |
43174805 |
tcataaat-aacat-ggcaataaaa-ccaataaaacca |
43174771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 10512103 - 10512050
Alignment:
| Q |
239 |
aaaatgagctaaaataacaccattattaattgtttcaagaacatatctttctat |
292 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |
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|
| T |
10512103 |
aaaatgagctaaaataacaccattgctaattggttcaagaacatctctttctat |
10512050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 6051139 - 6051216
Alignment:
| Q |
214 |
aaatagtatatcttccattcgttcaaaaatgagctaaaataacaccattattaattgtttcaagaacatatctttctat |
292 |
Q |
| |
|
|||||||||||| | |||| ||| |||| |||| |||||||||| ||||| ||| |||||||||||||| |||| |||| |
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|
| T |
6051139 |
aaatagtatatcattcatttgttgaaaa-tgagataaaataacatcattactaactgtttcaagaacatctcttactat |
6051216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 31235900 - 31235847
Alignment:
| Q |
239 |
aaaatgagctaaaataacaccattattaattgtttcaagaacatatctttctat |
292 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||||||||||| ||| ||||| |
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|
| T |
31235900 |
aaaatgagctaaaattacatcattactaattgtttcaagaacatctctctctat |
31235847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 33235608 - 33235661
Alignment:
| Q |
239 |
aaaatgagctaaaataacaccattattaattgtttcaagaacatatctttctat |
292 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||| ||||||||| |
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|
| T |
33235608 |
aaaatgagctaaaataacaccattgctaattggttcaaaaacatctctttctat |
33235661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 36247926 - 36247978
Alignment:
| Q |
240 |
aaatgagctaaaataacaccattattaattgtttcaagaacatatctttctat |
292 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||| |||||||||||||||||| |
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| T |
36247926 |
aaatgagctaaaatgacatcattgttaattgttaaaagaacatatctttctat |
36247978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 30206541 - 30206606
Alignment:
| Q |
544 |
attataaatcataaacatcaattattcaattaatttttaaaaagtaagatttgtttataatagtga |
609 |
Q |
| |
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|||||||| || | |||||||||||||||| ||| | |||||| || |||||||||||||||||| |
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|
| T |
30206541 |
attataaaccagatacatcaattattcaatgaatctgaaaaaaggaatatttgtttataatagtga |
30206606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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