View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4774-Insertion-7 (Length: 900)

Name: NF4774-Insertion-7
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4774-Insertion-7
NF4774-Insertion-7
[»] chr3 (6 HSPs)
chr3 (7-900)||(43921025-43921917)
chr3 (652-772)||(11411002-11411121)
chr3 (702-866)||(10515941-10516106)
chr3 (820-894)||(26565495-26565570)
chr3 (648-697)||(25092126-25092175)
chr3 (649-726)||(27044350-27044427)
[»] chr8 (7 HSPs)
chr8 (727-899)||(18602871-18603042)
chr8 (702-774)||(15850239-15850311)
chr8 (649-749)||(31772776-31772876)
chr8 (648-714)||(18602814-18602880)
chr8 (648-698)||(15131734-15131784)
chr8 (782-866)||(15131819-15131905)
chr8 (653-726)||(27402645-27402718)
[»] chr4 (5 HSPs)
chr4 (648-859)||(658195-658408)
chr4 (649-742)||(55681019-55681112)
chr4 (713-861)||(17733004-17733152)
chr4 (648-697)||(31734756-31734805)
chr4 (648-697)||(54305986-54306035)
[»] chr1 (4 HSPs)
chr1 (702-864)||(23432095-23432259)
chr1 (702-830)||(48632360-48632486)
chr1 (705-771)||(23636282-23636348)
chr1 (732-774)||(127937-127979)
[»] chr7 (7 HSPs)
chr7 (702-866)||(10678514-10678680)
chr7 (703-863)||(27616540-27616702)
chr7 (648-725)||(22291164-22291241)
chr7 (651-774)||(46014520-46014643)
chr7 (646-774)||(8799711-8799839)
chr7 (648-697)||(44572277-44572326)
chr7 (648-697)||(45215790-45215839)
[»] chr6 (7 HSPs)
chr6 (649-742)||(34010938-34011031)
chr6 (650-742)||(34013819-34013911)
chr6 (648-742)||(14494168-14494262)
chr6 (649-725)||(17540369-17540445)
chr6 (651-768)||(57317-57434)
chr6 (702-770)||(1255435-1255503)
chr6 (820-866)||(17540240-17540287)
[»] chr2 (5 HSPs)
chr2 (648-725)||(41849343-41849420)
chr2 (649-729)||(17651601-17651681)
chr2 (646-697)||(26576429-26576480)
chr2 (648-698)||(32200610-32200660)
chr2 (704-773)||(15989843-15989912)
[»] chr5 (3 HSPs)
chr5 (702-866)||(40838124-40838289)
chr5 (704-774)||(32676423-32676493)
chr5 (646-747)||(41815334-41815435)


Alignment Details
Target: chr3 (Bit Score: 768; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 7 - 900
Target Start/End: Original strand, 43921025 - 43921917
Alignment:
Q  7 acaatcgtccccactctttacaataacctatgtgaaaaggggaaactctgctatcatacttgagggatttgtgatctcaaagcacatattctcaaacagc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  43921025 acaatcgtccccactctttacaataacctatgtgaaaaggggaaactctgccatcatacttgagggatttgtgatctcaaagcacatattctcaaacaga 43921124  T
Q  107 taatcaaataaatcatctagaaaaaagttggctgcaatttacactttaaaaagccataatgataacaaagaacgacaagataatgctactttaaacaggt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43921125 taatcaaataaatcatctagaaaaaagttggctgcaatttacactttaaaaagccataatgataataaagaacgacaagataatgctactttaaacaggt 43921224  T
Q  207 nnnnnnnntctaggtcatgtttgctaatgaatattctcattcctgactccatcatgatatgtgcaatgcaaatgtgtgttgcaatctctactctctaact 306  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43921225 aaaaaaaatctaggtcatgtttgctaatgaatattctcattcctgactccatcatgatatgtgcaatgcaaatgtgtgttgcaatctctactctctaact 43921324  T
Q  307 acagacaaaaaatgaaggaaatattccatcaatagaaatatacagaaaacattttctaggctagcctattttccaaacaacagtctccaactaaacatga 406  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43921325 acagacaaaaaatgaaggaattattccatcaatagaaatatacagaaaacattttctaggctagcctattttccaaacaacagtctccaactaaacatga 43921424  T
Q  407 tgtattattcaaaaagcaagctttttccaataagttgtgtcaaccttcctcatagttgcactggtggagaacattctttcagtatgttgctttgttgaca 506  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43921425 tgtattattcaaaaagcaagctttttccaataagttgtgttaaccttcctcatagttgcactggtggagaacattctttcagtatgttgctttgttgata 43921524  T
Q  507 ttgtcagatcttaattatacaaactattatgaaaataccttcactagtgactagaacatttctcagaaaattaattatgcaatatataggggcgttgctc 606  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43921525 ttgtcagatcttaattatacaaactattatgaaaataccttgactagtgactagaacatttctcagaaaattaattatgcaatatataggggcgttgctc 43921624  T
Q  607 aaaaagcacagctcagttggcagggacatctcagtatacagctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtg 706  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  43921625 aaaaagcacagctcagttggcaggggcatctcagtatacagctatgaagcacggacacctctaggactagccgtgtcacggtgtccgacacgcttcggtg 43921724  T
Q  707 tccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctagggacc 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||| ||||||||| |||||    
T  43921725 tccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctagataaaattgtttttttctttaattcaacactccta-ggacc 43921823  T
Q  807 ggtgtccgacacctataacactcatcgaaccgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgcttccacatacggtag 900  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||    
T  43921824 ggtgtccgacacctataacactcatcgaaccgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccacatacagtag 43921917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 652 - 772
Target Start/End: Complemental strand, 11411121 - 11411002
Alignment:
Q  652 gaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaa 751  Q
    |||||| | ||||||||| ||||||||| ||| | | ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  11411121 gaagcatgaacacctctaagactagccgtgtcgcggagtccgacacgcgtcg-tgtccgacactcctatgacacttgtctgacacatgtcggacaactaa 11411023  T
Q  752 aatcggtgtcctaaataaaat 772  Q
    ||||| |||||||||||||||    
T  11411022 aatcgatgtcctaaataaaat 11411002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 702 - 866
Target Start/End: Original strand, 10515941 - 10516106
Alignment:
Q  702 cggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctag 801  Q
    |||||||||| |||||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||||       |||| |||||||||| ||||    
T  10515941 cggtgtccgagactcctatgacacttgtccgatacgtgttggacaactaaaatcagtgtcttaaataaaattg-ttttttctttgattcgacacttctag 10516039  T
Q  802 ggaccggtgtccgacacc--tataacactcat-cgaaccgtttcggacaactcagacaaatatctaaa 866  Q
    ||  ||||||||||||||  ||||| |||||| |||  ||| || |||||||||  ||||||||||||    
T  10516040 gg-tcggtgtccgacacctgtataatactcatacgagtcgtgtcagacaactcatgcaaatatctaaa 10516106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 820 - 894
Target Start/End: Complemental strand, 26565570 - 26565495
Alignment:
Q  820 tataacactcat-cgaaccgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgcttccacata 894  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||| ||       ||||||||||||||||||    
T  26565570 tataacactcatacgagccgtgtcggacaactcagacaaatatctaaaacatttttttctctcttgcttccacata 26565495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 697
Target Start/End: Original strand, 25092126 - 25092175
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacac 697  Q
    |||||||||||||||||||||||||||||  | ||| ||||||| |||||    
T  25092126 ctatgaagcacggacacctctaggactaggtgtgtcgcagtgtctgacac 25092175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 726
Target Start/End: Complemental strand, 27044427 - 27044350
Alignment:
Q  649 tatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacact 726  Q
    |||||||||| |||||||||   ||||| || ||  ||||||| ||||||| ||||||| ||||| ||||||||||||    
T  27044427 tatgaagcacagacacctcttaaactagacgtgttgcagtgtcagacacgcgtcggtgttcgacagtcctatgacact 27044350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 4e-53; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 727 - 899
Target Start/End: Original strand, 18602871 - 18603042
Alignment:
Q  727 tgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctagggaccggtgtccgacacctataaca 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||| | ||||||||||||||||||||| |    
T  18602871 tgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgtttttttctttgattcgacactcctaag-accggtgtccgacacctataaaa 18602969  T
Q  827 ctcatcgaaccgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgcttccacatacggta 899  Q
    |||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  18602970 ctcatcgaactgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccacatacggta 18603042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 702 - 774
Target Start/End: Original strand, 15850239 - 15850311
Alignment:
Q  702 cggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattg 774  Q
    ||||||||||||||||||||||||| ||  ||||||| || ||||||||||||||||||||||||||||||||    
T  15850239 cggtgtccgacactcctatgacactcgtacgacacgtatcagacaactaaaatcggtgtcctaaataaaattg 15850311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 649 - 749
Target Start/End: Complemental strand, 31772876 - 31772776
Alignment:
Q  649 tatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcggacaac 748  Q
    |||||||||||||||||| |||||| || ||||||   ||||||||||||  ||| ||||| ||||| ||||||||||||| ||||||||||||||||||    
T  31772876 tatgaagcacggacacctttaggaccaggcgcgtcgtggtgtccgacacgtgtcgatgtccaacactgctatgacacttgtatgacacgtgtcggacaac 31772777  T
Q  749 t 749  Q
    |    
T  31772776 t 31772776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 648 - 714
Target Start/End: Original strand, 18602814 - 18602880
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacac 714  Q
    |||||||||||||||| ||||||||||||| | ||||| ||||||||||||||| |||||| |||||    
T  18602814 ctatgaagcacggacatctctaggactagctgtgtcacggtgtccgacacgctttggtgtctgacac 18602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 698
Target Start/End: Original strand, 15131734 - 15131784
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacg 698  Q
    ||||||||||||||||||||||||||||| || ||| | ||||||||||||    
T  15131734 ctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacacg 15131784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 782 - 866
Target Start/End: Original strand, 15131819 - 15131905
Alignment:
Q  782 ctttaattcgacactcctagggaccggtgtccgacacctata--acactcatc-gaaccgtttcggacaactcagacaaatatctaaa 866  Q
    ||||| ||||||||||||| | ||||||||||||||||||||  ||||||||  || | || ||| ||||||||||||||||||||||    
T  15131819 ctttacttcgacactcctacg-accggtgtccgacacctatataacactcatatgagcagtgtcgaacaactcagacaaatatctaaa 15131905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 726
Target Start/End: Complemental strand, 27402718 - 27402645
Alignment:
Q  653 aagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacact 726  Q
    |||||||||||||||||||| ||| || ||    ||||| ||||||  |||||||||||||||||| |||||||    
T  27402718 aagcacggacacctctaggattaggcgtgttgtggtgtctgacacgtgtcggtgtccgacactcctttgacact 27402645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 648 - 859
Target Start/End: Original strand, 658195 - 658408
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcggacaa 747  Q
    ||||||||||||||||||| |||||| |  || ||| ||||||||||||||  ||||||||||||||| |||||||||||||  ||||||||||||| ||    
T  658195 ctatgaagcacggacacctataggaccaagcgtgtcgcagtgtccgacacgtgtcggtgtccgacacttctatgacacttgtacgacacgtgtcggataa 658294  T
Q  748 ctaaaatcggtgtcctaaataaaattg-nnnnnnnctttaattcgacactcctagggaccggtgtccgacacctat--aacactc-atcgaaccgtttcg 843  Q
    | || | | ||||||||||||||||||        ||||| |||||||||||||  || |||||||||||||||||  ||||||| | ||| ||||||||    
T  658295 ccaagaccagtgtcctaaataaaattgttttttttctttacttcgacactccta--gaacggtgtccgacacctatacaacactcaaacgagccgtttcg 658392  T
Q  844 gacaactcagacaaat 859  Q
     ||||||||| |||||    
T  658393 aacaactcagtcaaat 658408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 649 - 742
Target Start/End: Complemental strand, 55681112 - 55681019
Alignment:
Q  649 tatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcg 742  Q
    ||||||||||||||||||| |||||||| || ||| | ||||||||||||| |||||||||||||||||||||||||||||  ||||| |||||    
T  55681112 tatgaagcacggacacctcgaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccgacactcctatgacacttgtacgacacatgtcg 55681019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 861
Target Start/End: Complemental strand, 17733152 - 17733004
Alignment:
Q  713 actcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctagggaccggtgtc 812  Q
    |||||||||| ||||||  |||||||||| |||||||||||||||||||  |||||||| |        ||||||||||||||||||| ||||||||||     
T  17733152 actcctatgaaacttgttcgacacgtgtcagacaactaaaatcggtgtctcaaataaaa-tatttttttctttaattcgacactccta-ggaccggtgt- 17733056  T
Q  813 cgacac--ctataacactcat-cgaaccgtttcggacaactcagacaaatat 861  Q
    ||||||  |||||||| |||| ||| |||| ||||||||||| |||||||||    
T  17733055 cgacacctctataacattcatacgagccgtgtcggacaactctgacaaatat 17733004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 697
Target Start/End: Complemental strand, 31734805 - 31734756
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacac 697  Q
    |||||||||||||| |||| ||||| |||||| ||||| |||||||||||    
T  31734805 ctatgaagcacggaaacctttaggattagccgtgtcacggtgtccgacac 31734756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 697
Target Start/End: Complemental strand, 54306035 - 54305986
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacac 697  Q
    |||| ||| |||||||||||||||||||| || ||||| |||||||||||    
T  54306035 ctataaagtacggacacctctaggactaggcgtgtcacggtgtccgacac 54305986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 702 - 864
Target Start/End: Complemental strand, 23432259 - 23432095
Alignment:
Q  702 cggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctag 801  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| || |||||||||          |||||||||| ||||||||     
T  23432259 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtatcttaaataaaaaaaaaaaaatctttaattcggcactccta- 23432161  T
Q  802 ggaccggtgtccgacac--ctataacactcat-cgaaccgtttcggacaactcagacaaatatcta 864  Q
    |||||||||||||||||   |||||||||||| ||| |||| |||||||||||||| |||||||||    
T  23432160 ggaccggtgtccgacacttatataacactcatacgagccgtgtcggacaactcagataaatatcta 23432095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 702 - 830
Target Start/End: Original strand, 48632360 - 48632486
Alignment:
Q  702 cggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctag 801  Q
    |||||||||||||||| |||||||| || ||||||| ||||||||||||| | ||||||||||||||||||||       ||||  |||||||||||||     
T  48632360 cggtgtccgacactcccatgacactcgtatgacacgcgtcggacaactaagaccggtgtcctaaataaaattgtttttttctttgcttcgacactccta- 48632458  T
Q  802 ggaccggtgtccgacacctataacactca 830  Q
     ||||||||||||||||||||||||||||    
T  48632459 -gaccggtgtccgacacctataacactca 48632486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 771
Target Start/End: Complemental strand, 23636348 - 23636282
Alignment:
Q  705 tgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaa 771  Q
    |||||||||||||||||||||| ||  |||||||||||||||||| |||   |||| ||||||||||    
T  23636348 tgtccgacactcctatgacactcgtaagacacgtgtcggacaactcaaacaagtgtgctaaataaaa 23636282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 732 - 774
Target Start/End: Complemental strand, 127979 - 127937
Alignment:
Q  732 gacacgtgtcggacaactaaaatcggtgtcctaaataaaattg 774  Q
    |||||||||||||||| ||| | ||||||||||||||||||||    
T  127979 gacacgtgtcggacaaataagaccggtgtcctaaataaaattg 127937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 702 - 866
Target Start/End: Complemental strand, 10678680 - 10678514
Alignment:
Q  702 cggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctag 801  Q
    |||||||||| |||||||| | ||||||| ||||||||| ||| || ||||||||||||||| ||||||||||        |||||||| |||||||||     
T  10678680 cggtgtccgatactcctataatacttgtccgacacgtgttggaaaattaaaatcggtgtcctgaataaaattgtttttttatttaattcaacactccta- 10678582  T
Q  802 ggaccggtgtccgacacc--tataacactcat-cgaaccgtttcggacaactcagacaaatatctaaa 866  Q
    |||| |||||||||||||  |||||||||||| |||||||| || |||||||||||||||||| ||||    
T  10678581 ggactggtgtccgacacctatataacactcatacgaaccgtgtctgacaactcagacaaatatttaaa 10678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 703 - 863
Target Start/End: Complemental strand, 27616702 - 27616540
Alignment:
Q  703 ggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctagg 802  Q
    |||||||||||||| ||||||||| ||  |||||||||| ||||||||| | |||||||||||||||| |||       |||||  |||||||||||| |    
T  27616702 ggtgtccgacactcatatgacactcgtacgacacgtgtcagacaactaagaccggtgtcctaaataaatttgttttcttctttacatcgacactccta-g 27616604  T
Q  803 gaccggtgtccgacacctata--acactcat-cgaaccgtttcggacaactcagacaaatatct 863  Q
    || ||||||||| ||||||||  |||||||| | | |||| |||||||||||||||||||||||    
T  27616603 gaacggtgtccggcacctatatgacactcatacaagccgtgtcggacaactcagacaaatatct 27616540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 648 - 725
Target Start/End: Complemental strand, 22291241 - 22291164
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacac 725  Q
    |||||||||||||| |||||||||||||| |  ||| ||||||||||||||| |||||||||||||||||||||||||    
T  22291241 ctatgaagcacggaaacctctaggactaggcatgtcgcagtgtccgacacgcgtcggtgtccgacactcctatgacac 22291164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 651 - 774
Target Start/End: Complemental strand, 46014643 - 46014520
Alignment:
Q  651 tgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcggacaacta 750  Q
    ||||||||| ||||||| |||||||| || ||| |||||||| |||| | | ||||||||| |||||||||||||| ||  |||| |||||||||||| |    
T  46014643 tgaagcacgaacacctccaggactaggcgtgtcgcagtgtccaacacccgttggtgtccgaaactcctatgacactcgtacgacatgtgtcggacaacca 46014544  T
Q  751 aaatcggtgtcctaaataaaattg 774  Q
    | | || |||||||||||||||||    
T  46014543 agaccgttgtcctaaataaaattg 46014520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 646 - 774
Target Start/End: Complemental strand, 8799839 - 8799711
Alignment:
Q  646 agctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcggac 745  Q
    ||||||||||||||||||| | | || ||||||| ||| | ||||| |||| |  ||||| || ||||| ||||||||||||||    ||||||||||||    
T  8799839 agctatgaagcacggacacatttcggtctagccgtgtcgcggtgtctgacatgtgtcggtatctgacacgcctatgacacttgtacatcacgtgtcggac 8799740  T
Q  746 aactaaaatcggtgtcctaaataaaattg 774  Q
    || ||| | ||||||||||||||||||||    
T  8799739 aaataagaccggtgtcctaaataaaattg 8799711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 697
Target Start/End: Original strand, 44572277 - 44572326
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacac 697  Q
    |||||||||||||||||||||| |||||| || ||| | |||||||||||    
T  44572277 ctatgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacac 44572326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 697
Target Start/End: Original strand, 45215790 - 45215839
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacac 697  Q
    |||||||||||||||||||| |||||||| || ||| | |||||||||||    
T  45215790 ctatgaagcacggacacctccaggactaggcgtgtcgcggtgtccgacac 45215839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 649 - 742
Target Start/End: Original strand, 34010938 - 34011031
Alignment:
Q  649 tatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcg 742  Q
    ||||||||||||||||||| |||||||| || ||| | ||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||    
T  34010938 tatgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccgacactccaatgacacttgtgcgacacgtgtcg 34011031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 650 - 742
Target Start/End: Complemental strand, 34013911 - 34013819
Alignment:
Q  650 atgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcg 742  Q
    |||||||||||||||||| |||||||| || ||| | |||||||||| || ||||||||||||||||| |||||||||||  |||||||||||    
T  34013911 atgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacaagcgtcggtgtccgacactccaatgacacttgtacgacacgtgtcg 34013819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 648 - 742
Target Start/End: Original strand, 14494168 - 14494262
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcg 742  Q
    ||||||||||||||||||||||||||||| || ||||| || |||||||||| |||  ||||||||||||||||||||  ||  |||||||||||    
T  14494168 ctatgaagcacggacacctctaggactagacgtgtcacggtatccgacacgcgtcgaggtccgacactcctatgacacccgtacgacacgtgtcg 14494262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 649 - 725
Target Start/End: Complemental strand, 17540445 - 17540369
Alignment:
Q  649 tatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacac 725  Q
    ||||||||||  |||||||||||| ||| || ||| |||||||||| |||| |||||||||||||||||||||||||    
T  17540445 tatgaagcacatacacctctaggattagacgtgtcgcagtgtccgatacgcatcggtgtccgacactcctatgacac 17540369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 651 - 768
Target Start/End: Complemental strand, 57434 - 57317
Alignment:
Q  651 tgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcggacaacta 750  Q
    |||||||||||| ||||| ||||||||   ||||| ||||||||||| | ||||||||||| | || ||||| ||| ||  ||||||||||||| |||||    
T  57434 tgaagcacggacccctcttggactagctatgtcacggtgtccgacacacgtcggtgtccgatagtcttatgatactcgtacgacacgtgtcggataacta 57335  T
Q  751 aaatcggtgtcctaaata 768  Q
    | | ||| ||| ||||||    
T  57334 agaccggcgtcgtaaata 57317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 770
Target Start/End: Original strand, 1255435 - 1255503
Alignment:
Q  702 cggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaa 770  Q
    |||||||| |||||| | ||||||| || ||||||||||| ||||||||||||||| ||| ||||||||    
T  1255435 cggtgtccaacactcatgtgacactcgtatgacacgtgtcagacaactaaaatcggcgtcttaaataaa 1255503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 820 - 866
Target Start/End: Complemental strand, 17540287 - 17540240
Alignment:
Q  820 tataacactcatc-gaaccgtttcggacaactcagacaaatatctaaa 866  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  17540287 tataacactcatatgaaccgtgtcggacaactcagacaaatatctaaa 17540240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 648 - 725
Target Start/End: Complemental strand, 41849420 - 41849343
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacac 725  Q
    ||||||||||||||||||||||| | ||| || ||| | ||||| ||||||| |||||||||||||||||||||||||    
T  41849420 ctatgaagcacggacacctctagaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacactcctatgacac 41849343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 649 - 729
Target Start/End: Complemental strand, 17651681 - 17651601
Alignment:
Q  649 tatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgt 729  Q
    |||||||||||||||||| ||||| ||| || ||| | ||||||||||||| || ||||||||||||| ||||||||||||    
T  17651681 tatgaagcacggacacctttaggattaggcgtgtcgcggtgtccgacacgcgtcagtgtccgacactcttatgacacttgt 17651601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 646 - 697
Target Start/End: Complemental strand, 26576480 - 26576429
Alignment:
Q  646 agctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacac 697  Q
    ||||||||||||||||||||||||||||||| || ||| | |||||||||||    
T  26576480 agctatgaagcacggacacctctaggactagacgtgtcgcggtgtccgacac 26576429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 698
Target Start/End: Original strand, 32200610 - 32200660
Alignment:
Q  648 ctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacg 698  Q
    ||||||||||||||||||||||||||||| || ||| | ||||||||||||    
T  32200610 ctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacacg 32200660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 704 - 773
Target Start/End: Original strand, 15989843 - 15989912
Alignment:
Q  704 gtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaatt 773  Q
    |||||| ||||||||||||||||  |  ||||| |||||||||||||| | || ||||||||||||||||    
T  15989843 gtgtccaacactcctatgacactcttacgacacatgtcggacaactaagaccgatgtcctaaataaaatt 15989912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 702 - 866
Target Start/End: Complemental strand, 40838289 - 40838124
Alignment:
Q  702 cggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgnnnnnnnctttaattcgacactcctag 801  Q
    ||||||||||||||| ||||||| ||||| |||| |||| ||| ||| |||||| ||||||||||||||||||         ||||||||||||| ||      
T  40838289 cggtgtccgacactcgtatgacatttgtccgacatgtgttggaaaaccaaaatcagtgtcctaaataaaattgtttttta-gttaattcgacact-cttt 40838192  T
Q  802 ggaccggtgtccgacacc--tataacactcat-cgaaccgtttcggacaactcagacaaatatctaaa 866  Q
    |||||||||||||||| |  |||||||||||| | |  ||| ||||||||||||||||||| ||||||    
T  40838191 ggaccggtgtccgacatctatataacactcatacaagtcgtgtcggacaactcagacaaatgtctaaa 40838124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 704 - 774
Target Start/End: Original strand, 32676423 - 32676493
Alignment:
Q  704 gtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattg 774  Q
    ||||||||||||||||||||||||||  ||||||||| ||||| |||  | || |||||||||||||||||    
T  32676423 gtgtccgacactcctatgacacttgtacgacacgtgttggacagctatgaccgatgtcctaaataaaattg 32676493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 747
Target Start/End: Original strand, 41815334 - 41815435
Alignment:
Q  646 agctatgaagcacggacacctctaggactagccgcgtcacagtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcggac 745  Q
    |||| |||||||||||||||||||||||||| |  ||||| |||||  |||||  || |||||| |||||  ||||| ||| || ||||||||||| |||    
T  41815334 agctttgaagcacggacacctctaggactaggcatgtcacggtgtctaacacgtatcagtgtccaacacttttatgatactcgtgtgacacgtgtcagac 41815433  T
Q  746 aa 747  Q
    ||    
T  41815434 aa 41815435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University