View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4774-Insertion-9 (Length: 841)

Name: NF4774-Insertion-9
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4774-Insertion-9
NF4774-Insertion-9
[»] chr3 (12 HSPs)
chr3 (397-841)||(32606194-32606643)
chr3 (125-407)||(32605888-32606168)
chr3 (588-682)||(49682176-49682270)
chr3 (591-680)||(21813162-21813251)
chr3 (588-644)||(3973860-3973916)
chr3 (588-644)||(3995961-3996017)
chr3 (588-683)||(39144976-39145070)
chr3 (594-644)||(4009495-4009545)
chr3 (70-178)||(8076466-8076575)
chr3 (108-253)||(11347879-11348024)
chr3 (70-244)||(14623757-14623932)
chr3 (588-617)||(1996132-1996161)
[»] chr4 (16 HSPs)
chr4 (588-679)||(38949062-38949153)
chr4 (589-650)||(34469571-34469632)
chr4 (588-682)||(32893020-32893114)
chr4 (589-679)||(39804890-39804981)
chr4 (588-679)||(38380470-38380561)
chr4 (111-255)||(55475187-55475331)
chr4 (613-725)||(31655473-31655581)
chr4 (111-253)||(19670676-19670818)
chr4 (589-642)||(7388824-7388877)
chr4 (589-657)||(25115267-25115336)
chr4 (588-644)||(49011886-49011942)
chr4 (111-178)||(29239959-29240026)
chr4 (117-251)||(8343129-8343263)
chr4 (591-641)||(19652683-19652733)
chr4 (70-252)||(47986207-47986389)
chr4 (592-645)||(52650697-52650750)
[»] chr8 (16 HSPs)
chr8 (588-680)||(33285928-33286020)
chr8 (588-728)||(20142442-20142578)
chr8 (588-651)||(14237168-14237231)
chr8 (591-682)||(23984263-23984354)
chr8 (588-677)||(14855587-14855676)
chr8 (589-682)||(43238145-43238238)
chr8 (593-635)||(11078116-11078158)
chr8 (118-251)||(30479441-30479574)
chr8 (588-644)||(6904215-6904271)
chr8 (111-167)||(42354548-42354604)
chr8 (111-253)||(16383375-16383517)
chr8 (569-657)||(30674920-30675007)
chr8 (588-645)||(1876485-1876542)
chr8 (592-645)||(11533278-11533331)
chr8 (592-645)||(12002313-12002366)
chr8 (591-644)||(44042584-44042637)
[»] chr7 (12 HSPs)
chr7 (588-728)||(6771804-6771940)
chr7 (588-728)||(44319858-44319994)
chr7 (591-728)||(6775198-6775331)
chr7 (588-623)||(13040297-13040332)
chr7 (589-682)||(26210-26303)
chr7 (689-728)||(15034898-15034937)
chr7 (118-252)||(22343360-22343494)
chr7 (111-197)||(27744269-27744355)
chr7 (588-646)||(31902752-31902810)
chr7 (592-645)||(19620038-19620091)
chr7 (118-251)||(32564393-32564526)
chr7 (111-252)||(41915740-41915881)
[»] chr1 (14 HSPs)
chr1 (588-728)||(14758526-14758662)
chr1 (588-682)||(30529363-30529457)
chr1 (588-663)||(46729199-46729275)
chr1 (592-728)||(13792004-13792136)
chr1 (594-679)||(41649898-41649983)
chr1 (588-724)||(35508361-35508494)
chr1 (588-727)||(44920186-44920321)
chr1 (588-651)||(36564496-36564559)
chr1 (588-678)||(46895945-46896035)
chr1 (588-645)||(48947250-48947307)
chr1 (588-644)||(18038940-18038996)
chr1 (589-644)||(34582701-34582756)
chr1 (617-678)||(14890517-14890578)
chr1 (589-642)||(32562357-32562410)
[»] chr2 (10 HSPs)
chr2 (588-679)||(32438085-32438176)
chr2 (589-652)||(7933333-7933396)
chr2 (588-680)||(18734363-18734455)
chr2 (588-679)||(33962946-33963037)
chr2 (635-681)||(29673763-29673809)
chr2 (588-645)||(33634801-33634858)
chr2 (111-178)||(20700888-20700955)
chr2 (125-251)||(17819978-17820104)
chr2 (695-733)||(18684322-18684360)
chr2 (125-178)||(7465709-7465762)
[»] chr5 (8 HSPs)
chr5 (588-733)||(248464-248606)
chr5 (588-651)||(20125657-20125720)
chr5 (107-197)||(38296257-38296347)
chr5 (588-651)||(16980778-16980841)
chr5 (588-726)||(42877213-42877347)
chr5 (589-644)||(40944271-40944326)
chr5 (590-644)||(15206500-15206554)
chr5 (596-641)||(18988803-18988848)
[»] scaffold0633 (1 HSPs)
scaffold0633 (594-679)||(5013-5098)
[»] scaffold0027 (1 HSPs)
scaffold0027 (591-680)||(122471-122560)
[»] chr6 (6 HSPs)
chr6 (119-253)||(12732480-12732614)
chr6 (70-230)||(31952948-31953109)
chr6 (588-646)||(29988332-29988390)
chr6 (589-642)||(1479096-1479149)
chr6 (111-256)||(15990002-15990147)
chr6 (125-253)||(31110735-31110861)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 397 - 841
Target Start/End: Original strand, 32606194 - 32606643
Alignment:
Q  397 agatatgtgctatatattagatgtaattcaaaccaatatgtagttaattgtaactttgtcgtgtaggttacatgtttgttgtataatttaggagttagtt 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  32606194 agatatgtgctatatattagatgtaattcaaaccaatatgtagttaattgtaactttgtggtgtaggttacatgtttgttgtataatttaggagttagct 32606293  T
Q  497 agcttttaactaatgattttactggttttacaagaaattaggttagttagttgcaatctcaccaataaaaagtagggaaatgttaacgaatgactttaaa 596  Q
    | ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  32606294 atcttttaactaatgattttactggttttacgataaattaggttagtttgttgcaatctcaccaataaaaagtagggaaatgttaacaaaagactttaaa 32606393  T
Q  597 tagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaaacctta--- 693  Q
    || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||       
T  32606394 taataaatttttatgaaaaattatgcattcaatgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattga----aaaaccttatag 32606489  T
Q  694 -------tagagtgtcctaagagcactcgttaacaagaccctaaaaagtgttgatacattattgtaatcaatcaatttagtaacttgcatgtcaataata 786  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32606490 agtgtcctagagtgtcctaagagcactcgttaacaagaccctaaaaagtgttgatacattattgtaatcaatcaatttagtaacttgcatgtcaataata 32606589  T
Q  787 agtctctctaaatcttcttcttttcaaaatattctttaataatcaattcgtgtat 841  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  32606590 agtctctctaaatcttcttcttttcaaaatattctttaat-atcaattagtgtat 32606643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 125 - 407
Target Start/End: Original strand, 32605888 - 32606168
Alignment:
Q  125 taggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtatattgtca 224  Q
    |||||||||||||||  |||||||||| ||||||||| | |||||| |||| |||   | || |||  ||||| ||  |||||||| |  | ||||| ||    
T  32605888 taggaagaaagaagaggagatgaaagaaaaagtgtgcttgtgttggatccatgtaactatatatctattttttgtgtgaatgtcaaagaatgtattgcca 32605987  T
Q  225 cctaagattgtatatgtatcgtaactcttattgaattgaacatgcagaaatagaatctcatgctaaaatcttgtcggagtgtggtaattatatcaatcaa 324  Q
    ||||||||||| |||| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32605988 cctaagattgtctatg-atagtaactcttattgaattgaacctacagaaatagaatctcatgctaaaatcttgtcggagtgtggtaattatatcaatcaa 32606086  T
Q  325 tattacaaaatttactacccttccgatttccgtccctaatttttgtccttaaaagatttagatacatgtaatagatatgtgct 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  32606087 tattacaaaatttactacccttccgatttccgtccctaatttttgtccgt-aaagatttagatacatgtaatagatatgtgct 32606168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 588 - 682
Target Start/End: Complemental strand, 49682270 - 49682176
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaa 682  Q
    |||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||  ||||| ||   ||||||||||||||||||    
T  49682270 gactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatgttaaacttttttaaggaataattttttaattgaaa 49682176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 680
Target Start/End: Original strand, 21813162 - 21813251
Alignment:
Q  591 tttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattga 680  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||| || || ||||||  ||||||||   ||||||| ||||||||    
T  21813162 tttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtgttaaactttttcaatgaataatttcttaattga 21813251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 588 - 644
Target Start/End: Complemental strand, 3973916 - 3973860
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    ||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  3973916 gacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaa 3973860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 588 - 644
Target Start/End: Original strand, 3995961 - 3996017
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    ||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  3995961 gacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaa 3996017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 588 - 683
Target Start/End: Complemental strand, 39145070 - 39144976
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaat 683  Q
    ||||||||||| |||||||| ||  |||||| |||||||| |||||||||||||||| ||||||  ||||| |||| | ||||| |||||| ||||    
T  39145070 gactttaaataataaatttt-atagaaaattatgcattcaatgcatcggaaattgaagtgttaaaattttttaaaaaacaatttcttaattaaaat 39144976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 644
Target Start/End: Original strand, 4009495 - 4009545
Alignment:
Q  594 aaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    ||||||||||||||| || ||||||||||||| | ||||||||||||||||    
T  4009495 aaatagtaaatttttgtggaaaattgtgcatttaatgcatcggaaattgaa 4009545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 8076575 - 8076466
Alignment:
Q  70 ggaaaattttacatagacaccttttatttt-agatatttttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgtt 168  Q
    ||||||| ||||||||||||| |||||| | | | | |||| |||| |||||| |||||||||| ||||||  ||| |||||||||||||||| | ||      
T  8076575 ggaaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcg 8076476  T
Q  169 gggtccacgt 178  Q
    ||||||||||    
T  8076475 gggtccacgt 8076466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 11347879 - 11348024
Alignment:
Q  108 ttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgt 207  Q
    ||||||| |||||  | |||||||| ||||||  |||  ||||||||||||||| ||||  ||||||| || | ||| |||| ||||||| ||   ||||    
T  11347879 ttatacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgt 11347978  T
Q  208 caatgggtatattgtcacctaagattgtatatgtatcgtaactctt 253  Q
    ||| || | ||||||||||||||  ||| |||||||| ||||||||    
T  11347979 caaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 244
Target Start/End: Original strand, 14623757 - 14623932
Alignment:
Q  70 ggaaaattttacatagacaccttttatttt-agatatttttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgtt 168  Q
    ||||||| ||||||||||||| |||||| | | | ||  || |||| | |||| ||||| |||| ||||||  |||||||||||||||||||| | |||     
T  14623757 ggaaaatgttacatagacaccatttattctcatacatccttctacacctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtgtg 14623856  T
Q  169 gggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtatattgtcacctaagattgtatatgtatc 244  Q
     ||||||| |   |||||||| ||||||||||    |||||| |||| ||||| ||||||||  ||| ||||||||    
T  14623857 aggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatc 14623932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 617
Target Start/End: Original strand, 1996132 - 1996161
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaat 617  Q
    ||||||||||||||||||||||||||||||    
T  1996132 gactttaaatagtaaatttttatgaaaaat 1996161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 588 - 679
Target Start/End: Original strand, 38949062 - 38949153
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattg 679  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| || | |||||||||||||||    
T  38949062 gacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaattgaagtgttaaatttttttaagaaataattttttaattg 38949153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 589 - 650
Target Start/End: Original strand, 34469571 - 34469632
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgtta 650  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  34469571 actttaaataataaatttttatgaaaaattgtgcatttaatgcatcggaaattgaaatgtta 34469632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 588 - 682
Target Start/End: Complemental strand, 32893114 - 32893020
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgtt-aacttttttcaaaatataattttttaattgaaa 682  Q
    |||||||||||||||| ||||||  ||||||||||||||| ||||||| ||||||||||||| ||||||||| |||| |||| || ||||||||||    
T  32893114 gactttaaatagtaaacttttatagaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttttttaaaa-ataaattcttaattgaaa 32893020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 589 - 679
Target Start/End: Original strand, 39804890 - 39804981
Alignment:
Q  589 actttaaatagtaaatttt-tatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattg 679  Q
    ||||||||||||||||||| |||||||||||||||||| | || |||  |||||||| |||||| ||||||||||  |||||||||||||||    
T  39804890 actttaaatagtaaattttttatgaaaaattgtgcatttaatgtatcaaaaattgaagtgttaaattttttcaaataataattttttaattg 39804981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 588 - 679
Target Start/End: Complemental strand, 38380561 - 38380470
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattg 679  Q
    |||||||||||||||||||||||| |||||| |||||| | ||| |||||||||||| ||||||  |||||||||  | ||||| |||||||    
T  38380561 gactttaaatagtaaatttttatggaaaattatgcatttaatgcttcggaaattgaagtgttaaactttttcaaagaaaaatttattaattg 38380470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 55475331 - 55475187
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaa 210  Q
    |||| |||||||| |||||||| ||||||  ||| |||||||||||||| | ||||  |||||||  | | |||||||| ||||||| ||    ||||||    
T  55475331 tacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaa 55475232  T
Q  211 tgggtatattgtcacctaagattgtatatgtatcgtaactcttat 255  Q
     |||| ||||| ||||||||  ||| |||||||| ||||||||||    
T  55475231 agggtgtattgccacctaaggatgtttatgtatcataactcttat 55475187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 613 - 725
Target Start/End: Complemental strand, 31655581 - 31655473
Alignment:
Q  613 aaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaaaccttatagagtgtcctaagagcac 712  Q
    ||||||||||||||| | ||||||| |||||| ||||||  ||||| |||  |||||||||||||||      |||||||| | |||| |||||| ||||    
T  31655581 aaaattgtgcattcaatacatcggatattgaagtgttaaacttttttaaagaataattttttaattg----ggaaaccttaaaaagtgccctaagggcac 31655486  T
Q  713 tcgttaacaagac 725  Q
    |||||||||||||    
T  31655485 tcgttaacaagac 31655473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 19670676 - 19670818
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaa 210  Q
    |||| |||||||| |||||||| ||||||  ||| |||||||||||||| | | ||  |||||||  | | |||||||| ||||||| ||  | ||||||    
T  19670676 tacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaa 19670775  T
Q  211 tgggtatattgtcacctaagattgtatatgtatcgtaactctt 253  Q
     |||| ||||| ||||||||  ||| |||||||| ||||||||    
T  19670776 ggggtgtattgccacctaagggtgtttatgtatcataactctt 19670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 642
Target Start/End: Complemental strand, 7388877 - 7388824
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattg 642  Q
    |||||| |||||||||||||||| ||| ||||||||| | ||||||||||||||    
T  7388877 actttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattg 7388824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 657
Target Start/End: Original strand, 25115267 - 25115336
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaat-gttaacttttt 657  Q
    |||||||||||||| ||||||| |||| ||||| ||||| ||||| |||||||| ||| |||||||||||    
T  25115267 actttaaatagtaagtttttataaaaagttgtgtattcactgcattggaaattgtaatagttaacttttt 25115336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 588 - 644
Target Start/End: Original strand, 49011886 - 49011942
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    ||||||||||||||| ||||| |||||| ||||||||| | ||||||| ||||||||    
T  49011886 gactttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaa 49011942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 29240026 - 29239959
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgt 178  Q
    |||| |||||| |||||||||| ||||||  ||| |||||||||||||||| | ||| ||||||||||    
T  29240026 tacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgtggggtccacgt 29239959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 8343129 - 8343263
Alignment:
Q  117 ccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggta 216  Q
    ||||||| |||||||| ||||||  ||| |||||||||||| | | ||||  |||||||  | | |||||||| |||||||||| |  |||||| || |     
T  8343129 ccatgtattaggaagagagaagagaagaagaaagagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatg 8343228  T
Q  217 tattgtcacctaagattgtatatgtatcgtaactc 251  Q
    ||||| ||||||||  ||| |||||||| ||||||    
T  8343229 tattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 591 - 641
Target Start/End: Complemental strand, 19652733 - 19652683
Alignment:
Q  591 tttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaatt 641  Q
    |||| ||||||| |||||||||||| ||||||||||| ||||| |||||||    
T  19652733 tttagatagtaagtttttatgaaaatttgtgcattcaatgcattggaaatt 19652683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 252
Target Start/End: Complemental strand, 47986389 - 47986207
Alignment:
Q  70 ggaaaattttacatagacaccttttattttagatatttttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttg 169  Q
    ||||||| |||||||||||||||| |||  | | |   || ||||||||||||| |||||||| ||||||  | | |||||||||||||| | | ||  |    
T  47986389 ggaaaatgttacatagacacctttaattgcatacacccttgtacatcccatgtattaggaagagagaagagaataagaaagagaaagtgtacttgtgcgg 47986290  T
Q  170 ggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtatattgtcacctaagattgtatatgtatcgtaactct 252  Q
    ||||||  | | |||||||| ||||||| ||   ||||||| || | ||||| ||||||||  ||| |||||||| |||||||    
T  47986289 ggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 645
Target Start/End: Original strand, 52650697 - 52650750
Alignment:
Q  592 ttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaa 645  Q
    ||||||||||| |||||||||||||||||| | |||||| || | |||||||||    
T  52650697 ttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaa 52650750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 588 - 680
Target Start/End: Original strand, 33285928 - 33286020
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattga 680  Q
    |||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||||||||||| ||||||||||| ||||||| ||||||||    
T  33285928 gactttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaaaaaataatttcttaattga 33286020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 588 - 728
Target Start/End: Original strand, 20142442 - 20142578
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaa 687  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||||| ||||| || ||||||  ||||| |||| ||||||| |||||||||||        
T  20142442 gactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaactttttaaaaaaataatttcttaattgaaat---- 20142537  T
Q  688 accttatagagtgtcctaagagcactcgttaacaagaccct 728  Q
    |||||| |||||||||| ||  |||||||||||||||||||    
T  20142538 accttaaagagtgtccttaggacactcgttaacaagaccct 20142578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 588 - 651
Target Start/End: Complemental strand, 14237231 - 14237168
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaa 651  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||||    
T  14237231 gactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaa 14237168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 682
Target Start/End: Complemental strand, 23984354 - 23984263
Alignment:
Q  591 tttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaa 682  Q
    |||||||||||||||||||||||||||||||| ||||||| |||  |||||||  ||||||  ||||| |||  ||||||| ||||||||||    
T  23984354 tttaaatagtaaatttttatgaaaaattgtgctttcagtgtatcaaaaattgaggtgttaaacttttttaaagaataatttcttaattgaaa 23984263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 588 - 677
Target Start/End: Original strand, 14855587 - 14855676
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaat 677  Q
    ||||||||||| ||||||||||||||||| ||| ||||   ||||||| |||||||| ||||||  |||||||||  |||||||||||||    
T  14855587 gactttaaataataaatttttatgaaaaagtgtccatttgatgcatcgtaaattgaagtgttaaactttttcaaagaataattttttaat 14855676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 589 - 682
Target Start/End: Original strand, 43238145 - 43238238
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaa 682  Q
    ||||||||||||||||||||||| |||||| | |||| | ||||||| |||||||| ||||||  ||||| ||   ||||||| ||||||||||    
T  43238145 actttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtgttaaacttttttaaggaataatttcttaattgaaa 43238238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 635
Target Start/End: Complemental strand, 11078158 - 11078116
Alignment:
Q  593 taaatagtaaatttttatgaaaaattgtgcattcagtgcatcg 635  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  11078158 taaatagtaaatttttatgaaaaattatgcattcaatgcatcg 11078116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 30479441 - 30479574
Alignment:
Q  118 catgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtat 217  Q
    |||||| |||||||| ||||||  ||| |||||||||||||| | | ||   ||||||  ||| |||||||| ||||||||||   ||||||| |||| |    
T  30479441 catgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgt 30479540  T
Q  218 attgtcacctaagattgtatatgtatcgtaactc 251  Q
    |||| ||||||||  ||| |||||||| ||||||    
T  30479541 attgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 588 - 644
Target Start/End: Complemental strand, 6904271 - 6904215
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    ||||||| ||||||| |||||||| ||| |||||| |||| ||||||||||||||||    
T  6904271 gactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaa 6904215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 42354548 - 42354604
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgt 167  Q
    |||| |||||| |||||||||| ||||||  |||||||||||||||||||| |||||    
T  42354548 tacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgcttatgt 42354604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 16383517 - 16383375
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaa 210  Q
    |||| |||||||| |||||||| ||||||  ||| |||||||||||||| | | ||  |||||||  | | |||||||| ||||||| ||    ||||||    
T  16383517 tacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaa 16383418  T
Q  211 tgggtatattgtcacctaagattgtatatgtatcgtaactctt 253  Q
     |||| ||||| ||||||||  ||| |||||||| ||||||||    
T  16383417 ggggtgtattgccacctaagggtgtttatgtatcataactctt 16383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 657
Target Start/End: Original strand, 30674920 - 30675007
Alignment:
Q  569 tagggaaatgttaacgaatgactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatg-ttaacttttt 657  Q
    |||||||||||||||||  || || |||||||||  ||||||| |||  |||||||||| ||||| | ||||||||||| ||||||||||    
T  30674920 tagggaaatgttaacga--gatttaaaatagtaatattttatggaaatatgtgcattcaatgcattgtaaattgaaatgtttaacttttt 30675007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 645
Target Start/End: Original strand, 1876485 - 1876542
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaa 645  Q
    |||||||||| |||| |||||||||||  ||||| | ||||||||| |||||||||||    
T  1876485 gactttaaatggtaattttttatgaaagtttgtgtaatcagtgcattggaaattgaaa 1876542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 645
Target Start/End: Complemental strand, 11533331 - 11533278
Alignment:
Q  592 ttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaa 645  Q
    |||||| |||| |||||||||||  |||||| |||||||||| |||||||||||    
T  11533331 ttaaatggtaattttttatgaaagtttgtgccttcagtgcattggaaattgaaa 11533278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 645
Target Start/End: Complemental strand, 12002366 - 12002313
Alignment:
Q  592 ttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaa 645  Q
    ||||||||||| ||||||| |||| ||||| | ||||||||| |||||||||||    
T  12002366 ttaaatagtaactttttataaaaatttgtgtaatcagtgcattggaaattgaaa 12002313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 644
Target Start/End: Complemental strand, 44042637 - 44042584
Alignment:
Q  591 tttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    |||||||||||| |||||||  ||| ||||||||||| ||||| ||||||||||    
T  44042637 tttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaa 44042584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 588 - 728
Target Start/End: Complemental strand, 6771940 - 6771804
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaa 687  Q
    |||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||| | | ||||||||||  ||||||| ||||||||     ||    
T  6771940 gactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaaatggtgagttttttcaaagaataatttcttaattga----gaa 6771845  T
Q  688 accttatagagtgtcctaagagcactcgttaacaagaccct 728  Q
    |||||| |||||||| ||||  |||||||||| ||||||||    
T  6771844 accttaaagagtgtcttaaggacactcgttaagaagaccct 6771804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 588 - 728
Target Start/End: Original strand, 44319858 - 44319994
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaa 687  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||||| ||||| || ||||||  ||||| |||| ||||||| |||||||||||        
T  44319858 gactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaactttttaaaaaaataatttcttaattgaaat---- 44319953  T
Q  688 accttatagagtgtcctaagagcactcgttaacaagaccct 728  Q
    |||||| |||||||||| ||  |||||||||||||||||||    
T  44319954 accttaaagagtgtccttaggacactcgttaacaagaccct 44319994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 591 - 728
Target Start/End: Complemental strand, 6775331 - 6775198
Alignment:
Q  591 tttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaaacc 690  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||  | |  |||||||||  ||||||| ||||||||     |||||    
T  6775331 tttaaatagtaaatatttatggaaaattgtgcattcaatgcatcggaaattcaaatagtgagatttttcaaagaataatttattaattga----gaaacc 6775236  T
Q  691 ttatagagtgtcctaagagcactcgttaacaagaccct 728  Q
    ||| |||||| ||||||  ||||| |||||||||||||    
T  6775235 ttaaagagtgccctaaggacactccttaacaagaccct 6775198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 588 - 623
Target Start/End: Original strand, 13040297 - 13040332
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgca 623  Q
    ||||||||||||||||||||||||||||||||||||    
T  13040297 gactttaaatagtaaatttttatgaaaaattgtgca 13040332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 682
Target Start/End: Complemental strand, 26303 - 26210
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaa 682  Q
    |||||||||| ||||||||||||  ||||||| |||| | ||||||| ||||| || ||||||  |||| ||||  ||||||| ||||||||||    
T  26303 actttaaataataaatttttatgggaaattgtacatttaatgcatcgaaaattaaagtgttaaacttttgcaaagaataatttcttaattgaaa 26210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 728
Target Start/End: Original strand, 15034898 - 15034937
Alignment:
Q  689 ccttatagagtgtcctaagagcactcgttaacaagaccct 728  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  15034898 ccttaaagagtgtcctaagggcactcgttaacaagaccct 15034937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 252
Target Start/End: Complemental strand, 22343494 - 22343360
Alignment:
Q  118 catgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtat 217  Q
    |||||| |||||||| ||||||  ||| |||||||||||||| | | ||  |||||||  | |||||||||| ||||||| ||    |||||| |||| |    
T  22343494 catgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgt 22343395  T
Q  218 attgtcacctaagattgtatatgtatcgtaactct 252  Q
    |||| ||||||||  ||| |||||||| |||||||    
T  22343394 attgccacctaagggtgtttatgtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 27744269 - 27744355
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgattttt 197  Q
    ||||||||||| |||||||||| ||||||  ||| || ||||||| ||||| ||||  || ||||||| | |||||||| |||||||    
T  27744269 tacatcccatgcactaggaagagagaagaggagaggatagagaaaatgtgcttatgagggatccacgtggccacatgtcagattttt 27744355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 588 - 646
Target Start/End: Original strand, 31902752 - 31902810
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaat 646  Q
    |||||||||||||||||||||||| ||||||||| | ||| || || | ||||||||||    
T  31902752 gactttaaatagtaaatttttatggaaaattgtgtagtcaatgtattgaaaattgaaat 31902810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 645
Target Start/End: Complemental strand, 19620091 - 19620038
Alignment:
Q  592 ttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaa 645  Q
    ||||||||||| |||||||||||| ||||  | ||||||||| |||||||||||    
T  19620091 ttaaatagtaactttttatgaaaagttgtataatcagtgcattggaaattgaaa 19620038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 32564393 - 32564526
Alignment:
Q  118 catgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtat 217  Q
    |||||| |||||||| ||||||  ||| ||||||||||||||   | ||  |||||||  ||| |||||||| ||||||| ||    |||||| |||| |    
T  32564393 catgtattaggaagagagaagagaagaagaaagagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgt 32564492  T
Q  218 attgtcacctaagattgtatatgtatcgtaactc 251  Q
    |||| ||||||||| ||| |||||||| ||||||    
T  32564493 attgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 41915881 - 41915740
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaa 210  Q
    |||| ||||| || |||||||| ||||||  ||| |||||||||||||| | | ||  |||||||  | | |||||||| ||||||| || |  ||||||    
T  41915881 tacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaa 41915782  T
Q  211 tgggtatattgtcacctaagattgtatatgtatcgtaactct 252  Q
     |||| ||||| ||||||||  ||| |||||||| |||||||    
T  41915781 ggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 588 - 728
Target Start/End: Complemental strand, 14758662 - 14758526
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaa 687  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||  ||||| ||   ||||||| |||||||     |||    
T  14758662 gactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattg----gaaa 14758567  T
Q  688 accttatagagtgtcctaagagcactcgttaacaagaccct 728  Q
    || ||| |||||| ||| ||  |||||||||||||||||||    
T  14758566 actttaaagagtgcccttaggacactcgttaacaagaccct 14758526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 588 - 682
Target Start/End: Complemental strand, 30529457 - 30529363
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaa 682  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||| |||||| ||||||||||  ||||||| ||||||||||    
T  30529457 gactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcagaaattgaagtgttaaattttttcaaagaataatttcttaattgaaa 30529363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 588 - 663
Target Start/End: Complemental strand, 46729275 - 46729199
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaa-cttttttcaaaa 663  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |||||| ||||||| ||||    
T  46729275 gactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttgaagtgttaatcttttttaaaaa 46729199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 592 - 728
Target Start/End: Original strand, 13792004 - 13792136
Alignment:
Q  592 ttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaaacct 691  Q
    ||||||||||||||||||| | |||||||||||| | ||||||   ||||||| ||||||  ||||| |||| |||||||||||||| |    |||||||    
T  13792004 ttaaatagtaaatttttataagaaattgtgcattaaatgcatcaataattgaagtgttaaactttttaaaaaaataattttttaattaa----aaaacct 13792099  T
Q  692 tatagagtgtcctaagagcactcgttaacaagaccct 728  Q
    || |||||||| ||||  ||||||||| |||||||||    
T  13792100 taaagagtgtcttaaggacactcgttagcaagaccct 13792136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 594 - 679
Target Start/End: Complemental strand, 41649983 - 41649898
Alignment:
Q  594 aaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattg 679  Q
    |||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||  ||||| ||   |||||||||||||||    
T  41649983 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaattg 41649898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 588 - 724
Target Start/End: Complemental strand, 35508494 - 35508361
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgca-ttcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaa 686  Q
    ||||||||||| ||||||||||||| ||||||| || || | ||||| |||||||||| |||||| ||||||||||  ||||||| ||||||||     |    
T  35508494 gactttaaataataaatttttatgagaaattgtacatttaaatgcattggaaattgaagtgttaaattttttcaaagaataatttcttaattga----ga 35508399  T
Q  687 aaccttatagagtgtcctaagagcactcgttaacaaga 724  Q
    |||| || |||||||| | || ||||||||||||||||    
T  35508398 aaccataaagagtgtcatcagggcactcgttaacaaga 35508361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 588 - 727
Target Start/End: Complemental strand, 44920321 - 44920186
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaattaaa 687  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||  |||||||| ||||||  ||||| ||   ||||||| ||||||||     ||    
T  44920321 gacttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgttaaacttttttaatgaataatttcttaattga----gaa 44920226  T
Q  688 accttatagagtgtcctaagagcactcgttaacaagaccc 727  Q
    |||||| ||| || ||| | | ||||||||||||||||||    
T  44920225 accttaaagaatgcccttaaaacactcgttaacaagaccc 44920186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 651
Target Start/End: Original strand, 36564496 - 36564559
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaa 651  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||| ||||||    
T  36564496 gactttaaatagtaaaattttatgaaaaattgtgcattcaatgctttagaaattgaagtgttaa 36564559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 678
Target Start/End: Complemental strand, 46896035 - 46895945
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaatt 678  Q
    ||||||| ||||||| |||||||  ||| || |||||||| |||||||||||||||||| |||   |||||||| | ||||||| ||||||    
T  46896035 gactttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataaataatttcttaatt 46895945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 645
Target Start/End: Complemental strand, 48947307 - 48947250
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaa 645  Q
    |||||||||| |||| |||||||||||| ||||| | ||||||||| |||||||||||    
T  48947307 gactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaa 48947250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 588 - 644
Target Start/End: Complemental strand, 18038996 - 18038940
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    ||||||| ||| ||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  18038996 gactttagataataattttttatgaaaatttgtgtattcaatgcatcggaaattgaa 18038940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 644
Target Start/End: Complemental strand, 34582756 - 34582701
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    |||||| ||||||| |||||||||||| || |||||||| |||||| |||||||||    
T  34582756 actttagatagtaagtttttatgaaaacttatgcattcaatgcatcagaaattgaa 34582701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 678
Target Start/End: Original strand, 14890517 - 14890578
Alignment:
Q  617 ttgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaatt 678  Q
    ||||||||||| || ||||||||||||| | |||| |||||||||   ||||||||||||||    
T  14890517 ttgtgcattcaatgtatcggaaattgaagtattaagttttttcaattaataattttttaatt 14890578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 642
Target Start/End: Original strand, 32562357 - 32562410
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattg 642  Q
    |||||||||||||| ||||||| |||||||||| ||||| ||||| | ||||||    
T  32562357 actttaaatagtaagtttttataaaaaattgtgtattcactgcattgaaaattg 32562410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 588 - 679
Target Start/End: Original strand, 32438085 - 32438176
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattg 679  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||||   ||||||||  |||||||||||||||    
T  32438085 gactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaaccttttcaaataataattttttaattg 32438176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 589 - 652
Target Start/End: Complemental strand, 7933396 - 7933333
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaac 652  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  7933396 actttaaatagtaaatttttatgaaaaattatgcattcaatgcatcggaaattgaagtgttaac 7933333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 588 - 680
Target Start/End: Complemental strand, 18734455 - 18734363
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattga 680  Q
    ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||  ||||| ||   ||||||| ||||||||    
T  18734455 gacttgaaatagtaaatttttatgaaaaattgtgcattcaatgtatcggaaattgaagtgttaaacttttttaaggaataatttcttaattga 18734363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 588 - 679
Target Start/End: Original strand, 33962946 - 33963037
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattg 679  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| | |||||||| ||||||  ||||| |||  ||||||| |||||||    
T  33962946 gactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttttaaagaataatttcttaattg 33963037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 635 - 681
Target Start/End: Complemental strand, 29673809 - 29673763
Alignment:
Q  635 ggaaattgaaatgttaacttttttcaaaatataattttttaattgaa 681  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||    
T  29673809 ggaaattgaaatattaagttttttcaaaaaataattttttaattgaa 29673763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 645
Target Start/End: Original strand, 33634801 - 33634858
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaa 645  Q
    ||||||||||||||| ||||||| |||| ||||||| ||||| ||| |||||||||||    
T  33634801 gactttaaatagtaactttttataaaaagttgtgcaatcagtacattggaaattgaaa 33634858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 20700955 - 20700888
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgt 178  Q
    |||| |||||| |||||||||| ||||||  ||| |||||||||||||||| ||||  ||||||||||    
T  20700955 tacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttatgcggggtccacgt 20700888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 251
Target Start/End: Original strand, 17819978 - 17820104
Alignment:
Q  125 taggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtatattgtca 224  Q
    |||||||| ||||||  |||||||||||||| ||||  | ||| |||||||||||  |||||||| ||||||| ||    |||||| |||| ||||| ||    
T  17819978 taggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 17820077  T
Q  225 cctaagattgtatatgtatcgtaactc 251  Q
    ||||   |||| |||||||| ||||||    
T  17820078 cctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 695 - 733
Target Start/End: Complemental strand, 18684360 - 18684322
Alignment:
Q  695 agagtgtcctaagagcactcgttaacaagaccctaaaaa 733  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  18684360 agagtgtcccgagagcactcgttaacaagaccctaaaaa 18684322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 7465709 - 7465762
Alignment:
Q  125 taggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgt 178  Q
    |||||||| ||||||| |||| ||||||||||||||| | ||| ||||||||||    
T  7465709 taggaagagagaagaagagataaaagagaaagtgtgcttgtgtggggtccacgt 7465762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 588 - 733
Target Start/End: Original strand, 248464 - 248606
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgtt-aacttttttcaaaatataattttttaattgaaattaa 686  Q
    ||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||| |||| ||||||||| || | ||||||| ||||||||     |    
T  248464 gacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtgttaaacttttttaaagaaataatttcttaattga----ga 248559  T
Q  687 aaccttatagagtgtcc-taagagcactcgttaacaagaccctaaaaa 733  Q
    ||||||| |||||| || ||||| ||||||||||||||||||| ||||    
T  248560 aaccttaaagagtgcccttaaga-cactcgttaacaagacccttaaaa 248606  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 588 - 651
Target Start/End: Original strand, 20125657 - 20125720
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaa 651  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  20125657 gactttaaatagtaaatttttatgaaaaattgtgcatttagtgcatcgaaaattgaagtgttaa 20125720  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 38296347 - 38296257
Alignment:
Q  107 tttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgattttt 197  Q
    |||||||| |||||||| || ||||||||||||  ||||||| |||||||||||| | |||||| |||||||||  || ||||||||||||    
T  38296347 tttatacaccccatgtagtaagaagaaagaagaggagatgaatgagaaagtgtgcttgtgttggatccacgtagctacgtgtctgattttt 38296257  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 651
Target Start/End: Complemental strand, 16980841 - 16980778
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaa 651  Q
    |||||||||||||| |||||||||||||||| | |||||| || ||||||||||||| ||||||    
T  16980841 gactttaaatagtacatttttatgaaaaattatacattcaatgtatcggaaattgaagtgttaa 16980778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 726
Target Start/End: Complemental strand, 42877347 - 42877213
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgtt-aacttttttcaaaatataattttttaattgaaattaa 686  Q
    |||||||||||||||||||||||| ||||||||| ||||| | ||| | |||||||||| || |||||||||||  | ||||||| | ||||||     |    
T  42877347 gactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaattttaaacttttttcatga-ataatttctcaattga----ga 42877253  T
Q  687 aaccttatagagtgtcctaagagcactcgttaacaagacc 726  Q
    ||| ||| |||||||||| ||| ||||||||| |||||||    
T  42877252 aactttaaagagtgtccttagaacactcgttagcaagacc 42877213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 644
Target Start/End: Original strand, 40944271 - 40944326
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    |||||| |||||||||||||||| ||| |||| |||||| ||||||| ||||||||    
T  40944271 actttagatagtaaatttttatggaaatttgtacattcaatgcatcgaaaattgaa 40944326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 590 - 644
Target Start/End: Original strand, 15206500 - 15206554
Alignment:
Q  590 ctttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaa 644  Q
    ||||||||| ||| |||||||||||| ||||||||||| || |||| ||||||||    
T  15206500 ctttaaataataattttttatgaaaatttgtgcattcaatgaatcgaaaattgaa 15206554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 641
Target Start/End: Complemental strand, 18988848 - 18988803
Alignment:
Q  596 atagtaaatttttatgaaaaattgtgcattcagtgcatcggaaatt 641  Q
    |||||||||||||||||||| || |||||||| ||||| |||||||    
T  18988848 atagtaaatttttatgaaaacttatgcattcaatgcattggaaatt 18988803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 594 - 679
Target Start/End: Original strand, 5013 - 5098
Alignment:
Q  594 aaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattg 679  Q
    |||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||  ||||| ||   |||||||||||||||    
T  5013 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaattg 5098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 680
Target Start/End: Original strand, 122471 - 122560
Alignment:
Q  591 tttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattga 680  Q
    ||||| |||||| |||||||| ||||||||||||| | ||||||||||||| || ||||||  |||||||||  ||||||| ||||||||    
T  122471 tttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaattga 122560  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 12732614 - 12732480
Alignment:
Q  119 atgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtata 218  Q
    ||||||||| |||| ||||||  |||||||||||||| ||||| ||||| || ||||| ||| ||| |||| ||||||| ||    ||||||||  ||||    
T  12732614 atgtactagaaagagagaagaggagatgaaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattata 12732515  T
Q  219 ttgtcacctaagattgtatatgtatcgtaactctt 253  Q
    ||| ||| ||||| ||| |||||||| | ||||||    
T  12732514 ttgccacttaagaatgtctatgtatcattactctt 12732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 31952948 - 31953109
Alignment:
Q  70 ggaaaattttacatagacaccttttatttt-agatatttttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgtt 168  Q
    ||||||| ||||||||||||| |||||| | | | ||  || |||| |||||| |||||||||| ||||||  |||||||||||||||||||  | |||     
T  31952948 ggaaaatgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgtttgtgtg 31953047  T
Q  169 gggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtatattgtcacctaag 230  Q
     ||||||| |   |||||||| ||||||||||    |||||| |||| ||||| ||||||||    
T  31953048 aggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaag 31953109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 588 - 646
Target Start/End: Original strand, 29988332 - 29988390
Alignment:
Q  588 gactttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattgaaat 646  Q
    |||||||||||||||||||||||| |||||||  |||||| | ||||  ||||||||||    
T  29988332 gactttaaatagtaaatttttatggaaaattgaacattcaatacatcaaaaattgaaat 29988390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 642
Target Start/End: Original strand, 1479096 - 1479149
Alignment:
Q  589 actttaaatagtaaatttttatgaaaaattgtgcattcagtgcatcggaaattg 642  Q
    ||||||||| ||||||||||||| ||||||||| ||||| ||||| | ||||||    
T  1479096 actttaaatggtaaatttttatgtaaaattgtgtattcaatgcattgaaaattg 1479149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 15990002 - 15990147
Alignment:
Q  111 tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaa 210  Q
    |||| ||||| || |||||||| ||||||  ||| |||||||||||||| | | ||  |||||||  | | |||||||| ||||||| ||    ||||||    
T  15990002 tacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaa 15990101  T
Q  211 tgggtatattgtcacctaagattgtatatgtatcgtaactcttatt 256  Q
     |||| ||||| ||||||||  ||| |||||||| |||||||||||    
T  15990102 ggggtgtattgccacctaagggtgtttatgtatcataactcttatt 15990147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 31110735 - 31110861
Alignment:
Q  125 taggaagaaagaagaatagatgaaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgatttttatgcaaatgtcaatgggtatattgtca 224  Q
    |||||||| |||||| ||||  ||||||||||||||| | ||  ||||||| || || || |||| ||||||| ||  | |||||| |||| ||||| ||    
T  31110735 taggaagagagaagagtagagaaaagagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttttgtg--agtgtcaaagggtgtattgcca 31110832  T
Q  225 cctaagattgtatatgtatcgtaactctt 253  Q
    ||||||  ||| |||||||| ||||||||    
T  31110833 cctaaggatgtctatgtatcataactctt 31110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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