View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774_high_2 (Length: 535)
Name: NF4774_high_2
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 21 - 525
Target Start/End: Original strand, 43158011 - 43158504
Alignment:
| Q |
21 |
ttagcataaaaatatatcgaagggggttagagtttgttagttactttttattcatagtatgtttctagaaatannnnnnngtataaatttttaaaaatgg |
120 |
Q |
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| T |
43158011 |
ttagcataaaaatatatcgaagggggtt-----------gttactttttattcatagtatgtttttagaaatatttttttgtataaatttttaaaaatgg |
43158099 |
T |
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| Q |
121 |
agaatacatgttagagaaattttgtcaaaagagctttttctaacaatattctagagtaattgaattttaaatattaaaaaattcatgtcgttatctaatg |
220 |
Q |
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| T |
43158100 |
agaatacatgttagagaaattttgtcaaaagagctttttctaacaatattctagagtaattgaattttaaatattaaaaaattaatgtcgttatctaatg |
43158199 |
T |
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| Q |
221 |
aaaatatttgttgtatgttaaatttatttaagttatgtcatttgtcaattatgaatttcttggtgagcgaatcattggtggacatggatttttagaccgt |
320 |
Q |
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| T |
43158200 |
aaaatatttgttgtctgttaaatttatttaagttatgtcatttgtcaattatgaatttcttggtgagcgaatcattggcggacatggatttttagaccgt |
43158299 |
T |
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| Q |
321 |
tgtataaaaccttcgtcaattgtgtgactctcttgaaaagtgaaaaataaaattagtttttcttcattttgaacatgcgaagctaatttctcgtaattct |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43158300 |
tgtataaaaccttcgtcaattgtgtgactctcttgaaaagtgaaaaataaaattagcttttcttcattttgaacatgtgaagctaatttctcgtaattct |
43158399 |
T |
|
| Q |
421 |
cttttgtattttttgtggaggctcattcatagtgaatcaatgagctgctctcccgtaatacgttggtcaacttggacataacaagataaacaattttggt |
520 |
Q |
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| T |
43158400 |
cttttgtattttttgtagaggctcattcatagtgaatcaatgagttgctctcccgtaatacgttggtcaacttggacataacaagataaacaattttggt |
43158499 |
T |
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