View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774_high_5 (Length: 391)
Name: NF4774_high_5
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774_high_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 50594208 - 50594583
Alignment:
| Q |
16 |
tcactatcacccttatgctccaatatattctaagagggaaagacttcaagtttttgtttctattgcagctgttttagctgctacttatttgctctacttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50594208 |
tcactatcacccttatgctccaatatattctaagagggaaagacttcaagtttttgtttctattgcagctgttttagctgctacttatttgctctacttt |
50594307 |
T |
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| Q |
116 |
attgcatctttaaaagggattgtttggttgatatgtgtgtattttgtgccattgcttattgtgaatggttttcttgtaacaataacttatttgcagcata |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50594308 |
attgcatctttaaaagggtttgtttggttgatatgtgtgtattttgtgccattgcttattgtgaatggttttcttgtaacaataacttatttgcagcata |
50594407 |
T |
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| Q |
216 |
cacatttttctttgcctcattatgattcaaaagaatgggattggttaagaggagctttggcaactgtggatagagattatgggattttaaacaaagtgtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50594408 |
cacatttttctttgcctcattatgattcaaaagaatgggattggttgagaggagctttggcaactgtggatagagattatgggattttaatcaaagtgtt |
50594507 |
T |
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| Q |
316 |
tcatcacatcactgatactcatgtggctcatcatatcttttccacaatgccacattaccatgcgatggaagcaacc |
391 |
Q |
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| T |
50594508 |
tcatcacatcactgatactcatgtggctcatcatatcttttccacaatgccacattaccatgcgatggaagcaacc |
50594583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 1897024 - 1897193
Alignment:
| Q |
82 |
agctgttttagctgctacttatttgctctactttattgcatctttaaaagggattgtttggttgatatgtgtgtattttgtgccattgcttattgtgaat |
181 |
Q |
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| T |
1897024 |
agctgttctaactgctacttatttgctctactttattgcatatttgaaagggcttgcttggttgatatgtgagtattttgtggcattacttattctgaat |
1897123 |
T |
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| Q |
182 |
ggttttcttgtaacaataactta-tttgcagcatacacatttttctttgcctcattatgattcaaaagaa |
250 |
Q |
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| T |
1897124 |
tgttttcttgtatgaataactaattttgcaacatgcacgctattctttgcctcattatgattcaaaagaa |
1897193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 225 - 387
Target Start/End: Original strand, 23031638 - 23031800
Alignment:
| Q |
225 |
ctttgcctcattatgattcaaaagaatgggattggttaagaggagctttggcaactgtggatagagattatgggattttaaacaaagtgtttcatcacat |
324 |
Q |
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| T |
23031638 |
ctttgcctcattatgattctactgaatgggattggatgagaggtgctttggcaactgtggatagagattatggaattcttaataaagtttttcataacat |
23031737 |
T |
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| Q |
325 |
cactgatactcatgtggctcatcatatcttttccacaatgccacattaccatgcgatggaagc |
387 |
Q |
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| T |
23031738 |
aactgatactcatgtggttcatcatatgttttcaactatgcctcattatcatgcaatggaagc |
23031800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 29458891 - 29458791
Alignment:
| Q |
117 |
ttgcatctttaaaagggattgtttggttgatatgtgtgtattttgtgccat--tgcttattgtgaatggttttcttgtaacaataacttatttgcagcat |
214 |
Q |
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||||| |||| |||||| ||| | || ||||||||| |||||||||| || |||| |||| ||||| | |||| ||||||||||||||||||||||| |
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| T |
29458891 |
ttgcaactttgaaagggcttgataggctgatatgtggttattttgtgctatattgctcgttgtaaatggatatcttctaacaataacttatttgcagcat |
29458792 |
T |
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| Q |
215 |
a |
215 |
Q |
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| T |
29458791 |
a |
29458791 |
T |
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