View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4774_high_7 (Length: 373)

Name: NF4774_high_7
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4774_high_7
NF4774_high_7
[»] chr7 (23 HSPs)
chr7 (56-230)||(7961771-7961945)
chr7 (56-224)||(11269951-11270119)
chr7 (171-230)||(33100482-33100541)
chr7 (14-68)||(16565067-16565121)
chr7 (14-68)||(16600541-16600595)
chr7 (56-121)||(1103152-1103217)
chr7 (14-68)||(4258081-4258135)
chr7 (114-213)||(36207996-36208095)
chr7 (14-68)||(33855660-33855714)
chr7 (187-226)||(11280405-11280444)
chr7 (14-68)||(23390558-23390613)
chr7 (14-47)||(23396784-23396817)
chr7 (11-48)||(43366373-43366410)
chr7 (16-68)||(48113967-48114020)
chr7 (58-181)||(1716639-1716762)
chr7 (14-68)||(5266327-5266382)
chr7 (14-68)||(6751586-6751641)
chr7 (14-68)||(6783006-6783061)
chr7 (14-68)||(23821552-23821607)
chr7 (14-68)||(30768387-30768441)
chr7 (14-50)||(258602-258639)
chr7 (187-231)||(11269756-11269800)
chr7 (14-50)||(36492641-36492677)
[»] chr6 (24 HSPs)
chr6 (56-220)||(27340579-27340738)
chr6 (56-220)||(27401319-27401478)
chr6 (76-230)||(13555965-13556119)
chr6 (56-230)||(13557936-13558110)
chr6 (58-230)||(2921803-2921975)
chr6 (56-230)||(16403518-16403692)
chr6 (56-224)||(11678834-11679005)
chr6 (56-182)||(2923167-2923294)
chr6 (70-180)||(11677130-11677240)
chr6 (15-67)||(25998993-25999045)
chr6 (14-68)||(16590152-16590207)
chr6 (14-68)||(16605173-16605228)
chr6 (14-64)||(26098517-26098567)
chr6 (74-159)||(22880001-22880086)
chr6 (62-158)||(16910129-16910225)
chr6 (14-68)||(11317016-11317071)
chr6 (14-68)||(15101192-15101247)
chr6 (16-62)||(9496473-9496519)
chr6 (14-68)||(12124775-12124829)
chr6 (14-67)||(29742516-29742570)
chr6 (74-159)||(22898116-22898201)
chr6 (14-67)||(26098723-26098776)
chr6 (14-68)||(11313463-11313518)
chr6 (14-68)||(30527011-30527065)
[»] chr4 (24 HSPs)
chr4 (63-231)||(27272572-27272741)
chr4 (68-230)||(21206356-21206520)
chr4 (59-158)||(53469686-53469785)
chr4 (57-201)||(53472532-53472674)
chr4 (58-152)||(13816939-13817033)
chr4 (56-181)||(29235132-29235257)
chr4 (58-150)||(10395959-10396051)
chr4 (60-224)||(50887366-50887529)
chr4 (66-158)||(32015167-32015259)
chr4 (14-68)||(17077021-17077075)
chr4 (14-68)||(27634407-27634460)
chr4 (14-68)||(33629832-33629886)
chr4 (14-68)||(12016764-12016820)
chr4 (12-68)||(11786859-11786915)
chr4 (12-68)||(11799026-11799082)
chr4 (14-69)||(5066028-5066083)
chr4 (14-68)||(28245961-28246016)
chr4 (18-64)||(400456-400502)
chr4 (14-68)||(1923072-1923127)
chr4 (175-230)||(8305200-8305254)
chr4 (14-68)||(21498499-21498554)
chr4 (14-68)||(53559386-53559441)
chr4 (14-68)||(14945112-14945166)
chr4 (14-68)||(52827313-52827367)
[»] chr1 (18 HSPs)
chr1 (56-237)||(22826981-22827162)
chr1 (77-230)||(22826593-22826746)
chr1 (56-181)||(22840963-22841088)
chr1 (70-158)||(24272755-24272843)
chr1 (14-68)||(15391994-15392048)
chr1 (98-182)||(12458581-12458665)
chr1 (56-158)||(24284817-24284919)
chr1 (14-68)||(2997137-2997192)
chr1 (14-68)||(12314546-12314601)
chr1 (15-69)||(24382440-24382494)
chr1 (14-68)||(43361633-43361686)
chr1 (23-60)||(36332588-36332625)
chr1 (14-62)||(3969009-3969057)
chr1 (14-64)||(39648962-39649013)
chr1 (14-63)||(22892774-22892824)
chr1 (14-68)||(24382649-24382703)
chr1 (14-68)||(49142651-49142705)
chr1 (14-69)||(5325006-5325062)
[»] chr3 (13 HSPs)
chr3 (56-224)||(25889618-25889786)
chr3 (61-203)||(30046417-30046560)
chr3 (58-192)||(31141400-31141533)
chr3 (14-68)||(9264167-9264222)
chr3 (14-69)||(21833493-21833548)
chr3 (14-68)||(22407522-22407577)
chr3 (14-68)||(50692494-50692549)
chr3 (14-68)||(32034264-32034319)
chr3 (14-68)||(35015453-35015508)
chr3 (14-68)||(42258878-42258933)
chr3 (14-68)||(49477502-49477557)
chr3 (58-88)||(25578999-25579029)
chr3 (21-68)||(9264374-9264422)
[»] chr5 (19 HSPs)
chr5 (65-181)||(19670673-19670789)
chr5 (56-224)||(32795496-32795665)
chr5 (56-140)||(32796345-32796429)
chr5 (14-68)||(3015498-3015552)
chr5 (14-68)||(39268195-39268249)
chr5 (68-131)||(26896586-26896649)
chr5 (14-68)||(11632400-11632454)
chr5 (14-67)||(28156208-28156261)
chr5 (14-68)||(48185-48240)
chr5 (14-68)||(2908643-2908698)
chr5 (14-68)||(34457271-34457326)
chr5 (14-68)||(43490337-43490392)
chr5 (14-68)||(18107559-18107613)
chr5 (16-68)||(18914242-18914295)
chr5 (16-68)||(37656813-37656865)
chr5 (14-68)||(13413758-13413813)
chr5 (14-68)||(3763069-3763123)
chr5 (14-68)||(17130065-17130118)
chr5 (16-69)||(2716517-2716570)
[»] chr2 (18 HSPs)
chr2 (58-152)||(37965519-37965614)
chr2 (57-145)||(10128496-10128584)
chr2 (56-181)||(8761182-8761308)
chr2 (14-68)||(29695420-29695474)
chr2 (14-68)||(33985850-33985904)
chr2 (14-68)||(883682-883737)
chr2 (14-68)||(884025-884080)
chr2 (14-68)||(17727372-17727427)
chr2 (14-68)||(19860005-19860060)
chr2 (14-68)||(40009942-40009997)
chr2 (14-68)||(32667151-32667206)
chr2 (14-48)||(3435381-3435415)
chr2 (14-68)||(8044627-8044681)
chr2 (14-48)||(25082786-25082820)
chr2 (56-108)||(15140802-15140854)
chr2 (14-50)||(22447274-22447310)
chr2 (74-158)||(25550091-25550174)
chr2 (36-68)||(31761123-31761155)
[»] scaffold0007 (1 HSPs)
scaffold0007 (70-139)||(260217-260286)
[»] chr8 (13 HSPs)
chr8 (99-183)||(42001905-42001989)
chr8 (14-68)||(45122280-45122334)
chr8 (14-68)||(8559759-8559814)
chr8 (14-68)||(43599486-43599541)
chr8 (14-68)||(25186741-25186795)
chr8 (26-68)||(33435864-33435906)
chr8 (66-152)||(33897214-33897300)
chr8 (18-68)||(15857151-15857202)
chr8 (14-68)||(30065959-30066014)
chr8 (14-68)||(35561634-35561689)
chr8 (16-69)||(39124895-39124948)
chr8 (16-49)||(44441065-44441098)
chr8 (14-68)||(15010902-15010958)
[»] scaffold0012 (1 HSPs)
scaffold0012 (161-230)||(148427-148491)
[»] scaffold0434 (1 HSPs)
scaffold0434 (14-68)||(13481-13536)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 7961771 - 7961945
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    ||||||||| |||||||||||||||||||||||   |||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||    
T  7961771 cccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttttgct 7961870  T
Q  156 ataattagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    |||  |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  7961871 atagctagcattacttctactattcaaaatttgtaattatcaattgcattatacaatctctttctttctatattt 7961945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 11269951 - 11270119
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    |||||||||||||||||||||||||||  |||    |||| |||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||| ||    
T  11269951 cccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaatagttagtgggttttgct 11270050  T
Q  156 ataattagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttct 224  Q
    |||| |||  |||| |||||||||||  |||||||||||||||||||| ||||||| || |||||||||    
T  11270051 ataactagtgttacctctactattcagtatttgtaattatcaattacattatacaacttatttctttct 11270119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 33100482 - 33100541
Alignment:
Q  171 tctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33100482 tctactattcaaaatttgtaattatcaattacattatacaatttctttctttctatattt 33100541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 16565067 - 16565121
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  16565067 agagtgttgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggata 16565121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 16600595 - 16600541
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  16600595 agagtgttgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggata 16600541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 1103152 - 1103217
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgtta 121  Q
    |||||||||||||||||||||||||||| |||||| |||  |||||||||||| ||||||||||||    
T  1103152 cccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgtta 1103217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 4258135 - 4258081
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  4258135 agagtgttgggcgtgagggggtgtattgggaaaaacccaagtctcacatcggata 4258081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 36207996 - 36208095
Alignment:
Q  114 gtgtgttagtatttcttgtaccaataattagtgggttttactataattagcattacttctactattcaaaatttgtaattatcaattacactatacaatt 213  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||  |||| |||  ||||||||| |  || | |||||||||| |||| |||||||||    
T  36207996 gtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcgttagctctactatttagtatctctaattatcaactacattatacaatt 36208095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 33855660 - 33855714
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  33855660 agagtgatgggtgtgagggggtgtattgggaaaaacccaagtcccacatcggata 33855714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 11280405 - 11280444
Alignment:
Q  187 tgtaattatcaattacactatacaatttctttctttctat 226  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  11280405 tgtaattatcaattacattatacaatttctttctttctat 11280444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 23390558 - 23390613
Alignment:
Q  14 agagtgttgggcgtga-gggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||| ||||||||||||||||||||| | | |||||||||||||    
T  23390558 agagtgttgggcgtgacgggggtgtattgggaaaaacccatgtcccacatcggata 23390613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 23396784 - 23396817
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaa 47  Q
    ||||||||||||||||||||||||||||||||||    
T  23396784 agagtgttgggcgtgagggggtgtattgggaaaa 23396817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 43366373 - 43366410
Alignment:
Q  11 cagagagtgttgggcgtgagggggtgtattgggaaaaa 48  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43366373 cagagagtgttgggcgtgagggagtgtattgggaaaaa 43366410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 48113967 - 48114020
Alignment:
Q  16 agtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||||| |||||||||||| |||| ||| |||||||||||||    
T  48113967 agtgttgggcgtgaggggggtgtattgggaataacccaagtcccacatcggata 48114020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 1716762 - 1716639
Alignment:
Q  58 cacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactat 157  Q
    ||||||| | |||||||| ||||||| |||||| ||   |||||||||||   ||||||||||| ||||||||| | ||||| |||||| |||||  |||    
T  1716762 cacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatcaatagttagtgagtttttttat 1716663  T
Q  158 aattagcattacttctactattca 181  Q
    |  | | ||||| |||||||||||    
T  1716662 agctggtattacctctactattca 1716639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 5266327 - 5266382
Alignment:
Q  14 agagtgttgggcgtga-gggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||| ||||||||||||||||||||| | | |||||||| ||||    
T  5266327 agagtgttgggcgtgatgggggtgtattgggaaaaacccatgtcccacatcagata 5266382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 6751641 - 6751586
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||||| ||| |||| ||||||||    
T  6751641 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccaaatcggata 6751586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 6783006 - 6783061
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||    
T  6783006 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtctcacatcggata 6783061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 23821607 - 23821552
Alignment:
Q  14 agagtgttgggcgtgaggg-ggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||| |||||||||||||||||| ||| ||||||| |||||    
T  23821607 agagtgctgggcgtgagggaggtgtattgggaaaaacccaagtcccacataggata 23821552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 30768387 - 30768441
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||| |||||||||| ||||||||  | | |||||||||||||    
T  30768387 agagtgttgggcgtgacggggtgtattaggaaaaactcatgtcccacatcggata 30768441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 258602 - 258639
Alignment:
Q  14 agagtgttgggcgtga-gggggtgtattgggaaaaacc 50  Q
    |||||||||||||||| |||||||||||||||||||||    
T  258602 agagtgttgggcgtgacgggggtgtattgggaaaaacc 258639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 11269800 - 11269756
Alignment:
Q  187 tgtaattatcaattacactatacaatttctttctttctatatttt 231  Q
    ||||||||||||||||| |||||||||  ||||||||||| ||||    
T  11269800 tgtaattatcaattacattatacaattcatttctttctatttttt 11269756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 36492677 - 36492641
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacc 50  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  36492677 agagtgttgggtgtgagggagtgtattgggaaaaacc 36492641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 27340738 - 27340579
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||  ||||||||||||| ||||||||||||| |||||||||||| ||    
T  27340738 cccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaaac--tgtgtgttagtatatcttgtaccaatagttagtgggttttgct 27340641  T
Q  156 ataattagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttct 220  Q
    |||| |||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||    
T  27340640 ataactagcattacttctactattcaaaatttgtaattatca---acattatacaatttctttct 27340579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 27401478 - 27401319
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||  ||||||||||||| ||||||||||||| |||||||||||| ||    
T  27401478 cccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaaac--tgtgtgttagtatatcttgtaccaatagttagtgggttttgct 27401381  T
Q  156 ataattagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttct 220  Q
    |||| |||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||    
T  27401380 ataactagcattacttctactattcaaaatttgtaattatca---acattatacaatttctttct 27401319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 76 - 230
Target Start/End: Complemental strand, 13556119 - 13555965
Alignment:
Q  76 gaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataattagcattacttctac 175  Q
    ||||||||||||| | |||| |||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||| |||||  |||||||||||||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttctac 13556020  T
Q  176 tattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  13556019 tattcaaaatttgtaattatcaattacattatacaatatctttctttctatattt 13555965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 13558110 - 13557936
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||||| | ||||||||||||||||| || ||||||| ||||||| |||| ||    
T  13558110 cccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattttgct 13558011  T
Q  156 ataattagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    ||   ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||    
T  13558010 attgctagcattacttctactattcaaaatttgtaactatcaattacattatacaatctctttttttctatattt 13557936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 2921975 - 2921803
Alignment:
Q  58 cacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactat 157  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||||  ||| ||||||||||||||||| ||||||| |||||||||||| ||||    
T  2921975 cacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttttgctat 2921876  T
Q  158 aattagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    |  ||||||||| |||| |||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||    
T  2921875 agctagcattacgtctaatattcaaaatttgtaattaagaattacattatacaatttctttccttctatattt 2921803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 16403518 - 16403692
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    |||||||| | |||||||||||||||||||| ||| | || ||||||||||||  ||||||||||  ||||  ||| ||||||||||||||| |||| ||    
T  16403518 cccacatcaggtaatatgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtttatattatttgcaccaataattagtggattttgct 16403616  T
Q  156 ataatt-agcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    |||  | ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  16403617 atagctgagcattacttctactattcaaaatttgtttttatcaattacattatacaatttctttctttctatattt 16403692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 11678834 - 11679005
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    ||||||||||||||||||||||||||||||||| | |||| || |||||||||  |||||||||||||||||||   |||||    |||||| |||| ||    
T  11678834 cccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaa----tagtggattttgct 11678929  T
Q  156 ataattagcattacttctactattcaaaatttgtaa-------ttatcaattacactatacaatttctttctttct 224  Q
    ||| |||||||||| |||||||||||  ||||||||       |||||||||||| ||| ||||| ||||||||||    
T  11678930 atagttagcattacctctactattcagtatttgtaatatgtatttatcaattacattattcaattcctttctttct 11679005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 2923294 - 2923167
Alignment:
Q  56 cccacatcggataatatgaagaaatatgc-aaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttac 154  Q
    ||||||||||||||||||||||||||||| |||| | |||| ||||||||||||  |||||||||||||| |||||| || |||| ||||||||| ||      
T  2923294 cccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagttagtgggtcttgt 2923195  T
Q  155 tataattagcattacttctactattcaa 182  Q
    ||||  ||  ||||||||||||||||||    
T  2923194 tatagctaatattacttctactattcaa 2923167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 11677130 - 11677240
Alignment:
Q  70 tatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataattagcattac 169  Q
    |||||||||||||||||||   || | ||||||||||||  |||||||||||||||||||   ||||||| |||| ||||||| |||||  |||||||||    
T  11677130 tatgaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagttagcgggttttcctatagctagcattac 11677229  T
Q  170 ttctactattc 180  Q
     ||||||||||    
T  11677230 ctctactattc 11677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 25998993 - 25999045
Alignment:
Q  15 gagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggat 67  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25998993 gagtgatgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggat 25999045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 16590152 - 16590207
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  16590152 agagtgttgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 16590207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 16605228 - 16605173
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  16605228 agagtgttgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 16605173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 26098517 - 26098567
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcg 64  Q
    |||||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  26098517 agagtgatgggcgtgagggggtgtattgggaaaaacccaagtcccacatcg 26098567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 22880086 - 22880001
Alignment:
Q  74 aagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataa 159  Q
    |||||||||  ||| || |||| |||||||||||    |||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  22880086 aagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttgcaccaataattagtgggttttgctataa 22880001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 16910225 - 16910129
Alignment:
Q  62 tcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactata 158  Q
    ||||||||||||||| ||||||||||||| |||   |||||||||||   |||||||||||||||| |||  |||||| || ||| ||||| |||||    
T  16910225 tcggataatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagtttgtgtgttttgctata 16910129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 11317016 - 11317071
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  11317016 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 11317071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 15101247 - 15101192
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||    
T  15101247 agagtgttgggcgtgaggggggtgtattgggaaaaatccaagtcccacatcggata 15101192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 9496473 - 9496519
Alignment:
Q  16 agtgttgggcgtgagggggtgtattgggaaaaacctaagacccacat 62  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  9496473 agtgttgggcgtgagggggtgtattgggacaaacccaagtcccacat 9496519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 12124829 - 12124775
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||  || |||||||||||||||||||| |||||||| ||||    
T  12124829 agagtgttgggcgtgaaaggatgtattgggaaaaacctaagtcccacatcagata 12124775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 29742570 - 29742516
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggat 67  Q
    ||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||    
T  29742570 agagtgttgggcgtgaggggggtgtattaggaaaaacttaagtcccacatcggat 29742516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 22898201 - 22898116
Alignment:
Q  74 aagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataa 159  Q
    |||||||||  ||| || |||| |||||||||||    || ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  22898201 aagaaatatataaatacttggtcatataaataaaggttttttgtgttaatatttcttgcaccaataattagtgggttttgctataa 22898116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 26098723 - 26098776
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggat 67  Q
    |||||| |||| ||||||||||||||||||||||||| ||| || |||||||||    
T  26098723 agagtgatgggtgtgagggggtgtattgggaaaaacccaagtcctacatcggat 26098776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11313518 - 11313463
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||||| ||  |||||||||||||    
T  11313518 agagtgctgggcgtgaggggggtgtattgggaaaaacccaaatcccacatcggata 11313463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 30527011 - 30527065
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||| |||||||||||||||||| || |||  ||| |||||||||||||    
T  30527011 agagtgttggacgtgagggggtgtattggaaacaactcaagtcccacatcggata 30527065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 27272572 - 27272741
Alignment:
Q  63 cggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtggg-ttttactataatt 161  Q
    ||||||||||||||||||||||||||   |||| ||||||||||||  ||||||||||||||||||||| ||||||| |||||||| |||| |||||  |    
T  27272572 cggataatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagct 27272671  T
Q  162 agcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatatttt 231  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||    
T  27272672 agcattacttctactattcaaaatttgtaattattaattacattatacaatctctttctttttatatttt 27272741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 68 - 230
Target Start/End: Original strand, 21206356 - 21206520
Alignment:
Q  68 aatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttc-ttgtaccaataattagtgggttttact-ataattagca 165  Q
    |||| |||||||||| ||||| | |||| |||||||||||| || ||||| |||||||||  ||  ||||||| ||||||||||||  | ||| ||||||    
T  21206356 aatacgaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtattttattacaccaatagttagtgggtttttgttatagttagca 21206455  T
Q  166 ttacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  21206456 ttacttctattattcaaaatttgtaattatcaattacattatacaatctctttctttttatattt 21206520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 53469785 - 53469686
Alignment:
Q  59 acatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactata 158  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||| | ||||| ||||||| ||||||||||    
T  53469785 acatcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgaatcaatagttagtggattttactata 53469686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 53472674 - 53472532
Alignment:
Q  57 ccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttacta 156  Q
    ||||||||||||||| |||||||||||||||||| ||   ||||||||||||   ||||||||||||||||| || ||||||  |||||||||||| |||    
T  53472674 ccacatcggataatacgaagaaatatgcaaagacttgcc-atataaataaaagt-ttgtgtgttagtatttcatgcaccaatggttagtgggttttgcta 53472577  T
Q  157 taattagcattacttctactattcaaaatttgtaattatcaatta 201  Q
    ||  |||| |||| |||||||||||  || |||||||||| ||||    
T  53472576 tagctagcgttacctctactattcagtatctgtaattatcgatta 53472532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 13816939 - 13817033
Alignment:
Q  58 cacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggtttt 152  Q
    ||||||| | ||||||||||||||||| ||||| |||| ||||||||||| ||||| ||||||| |||||||||||| |||| |||||| |||||    
T  13816939 cacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttattatttcttgtacaaatagttagtgagtttt 13817033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 29235257 - 29235132
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagt-atttcttgtaccaataattagtgggttttac 154  Q
    |||||||||||| ||||||| |||||||||||||| |||  |||||||||||  |||||||||||||| |||||||| ||||||| || || |||||| |    
T  29235257 cccacatcggattatatgaaaaaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaatagttcgt-ggttttgc 29235159  T
Q  155 tataattagcattacttctactattca 181  Q
    |||| || | ||||| |||||||||||    
T  29235158 tatagttggtattacatctactattca 29235132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 10395959 - 10396051
Alignment:
Q  58 cacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggtt 150  Q
    |||||| || || ||||||||||||||||||||  ||  |||||||||||| |||||||||||||||||||||| | ||||| ||||||||||    
T  10395959 cacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggtt 10396051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 50887529 - 50887366
Alignment:
Q  60 catcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataa 159  Q
    ||||| |||||||||| |||||||||||| | |||  |||||||||||   |||||| ||| || || |||  || |||| |||||||||||| |||||     
T  50887529 catcgaataatatgaa-aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtgggttttgctatag 50887431  T
Q  160 ttagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttct 224  Q
     ||| ||||| ||||||||| |  || ||||||||||||||||| ||||||||| ||||||||||    
T  50887430 ctagtattacctctactatttagtatatgtaattatcaattacattatacaattcctttctttct 50887366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 32015167 - 32015259
Alignment:
Q  66 ataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactata 158  Q
    |||||| ||||| |||||||||||| |||  | |||||||||    |||||||||||||||||||| ||||||| |||||||||||| |||||    
T  32015167 ataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcaccaatagttagtgggttttgctata 32015259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 17077075 - 17077021
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  17077075 agagtgatgggcgtgaggtggtgtattgggaaaaacccaagtcccacatcggata 17077021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 27634460 - 27634407
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  27634460 agagtgttgggcgtgagggg-tgtattgggaaaaaccaaagtcccacatcggata 27634407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 33629832 - 33629886
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  33629832 agagtgctgggcgtgagtgggtgtattgggaaaaacccaagtcccacatcggata 33629886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 12016820 - 12016764
Alignment:
Q  14 agagtgttgggcgtgaggggg--tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||    
T  12016820 agagtgttgggcgtgagggggggtgtattgggaaaaacccaagtcccacatcggata 12016764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 11786915 - 11786859
Alignment:
Q  12 agagagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||| |||||||  ||||||||||||||||||||  ||||||||||||    
T  11786915 agagagtgttgggtgtgagggattgtattgggaaaaacctaagttccacatcggata 11786859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 11799082 - 11799026
Alignment:
Q  12 agagagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||| |||||||  ||||||||||||||||||||  ||||||||||||    
T  11799082 agagagtgttgggtgtgagggattgtattgggaaaaacctaagttccacatcggata 11799026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 5066028 - 5066083
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggataa 69  Q
    |||||||||||||||||||||||||||||||||||   ||| |||||||| |||||    
T  5066028 agagtgttgggcgtgagggggtgtattgggaaaaattcaagtcccacatcagataa 5066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 28245961 - 28246016
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  28245961 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 28246016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 400502 - 400456
Alignment:
Q  18 tgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcg 64  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||    
T  400502 tgttgggcgtgagggggtgtataaggaaaaacctaagtcccacatcg 400456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 1923127 - 1923072
Alignment:
Q  14 agagtgttgggcgtga-gggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||| ||||||||||||||||||||| | | |||||||| ||||    
T  1923127 agagtgttgggcgtgacgggggtgtattgggaaaaacccatgtcccacatcagata 1923072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 8305254 - 8305200
Alignment:
Q  175 ctattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    |||||||||||| |||||||||||||||| |||||||| || ||||||| ||||||    
T  8305254 ctattcaaaatt-gtaattatcaattacattatacaatctcgttctttcaatattt 8305200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 21498499 - 21498554
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||| |||||||||||||    
T  21498499 agagtgctgggcatgaggggggtgtattgggaaaaacccaagtcccacatcggata 21498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 53559441 - 53559386
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||| | ||| |||||||||||||    
T  53559441 agagtgctgggcgtgaggggggtgtattgggaaaaaaccaagtcccacatcggata 53559386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 14945112 - 14945166
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||| ||||| |||||||||||||||||||  | | |||||||||||||    
T  14945112 agagtgttggacgtgacggggtgtattgggaaaaacacatgtcccacatcggata 14945166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 52827367 - 52827313
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||||||||||  ||||||| ||| | ||||| |||||    
T  52827367 agagtgttgggcgtgagggggtgtattgttaaaaacccaagtctcacattggata 52827313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 22827162 - 22826981
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    |||||||||||||||||||||||||||||||||   |||| |||||||||||| |||||||||||  ||||||||| ||||||| ||||||||||||  |    
T  22827162 cccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagttagtgggttttgtt 22827063  T
Q  156 ataattagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatattttcatatg 237  Q
    |||  |||||||||||||||||||||||||| |||||||||| ||||| |||  ||| |||||||||||||||||| |||||    
T  22827062 atagctagcattacttctactattcaaaattcgtaattatcatttacattattaaatctctttctttctatatttttatatg 22826981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 22826746 - 22826593
Alignment:
Q  77 aaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataattagcattacttctact 176  Q
    |||| ||||||| | |||| |||||||||||| |||| ||||||||||||||||| ||||||| ||||||| |||| |||||  ||||||||||||||||    
T  22826746 aaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagctagcattacttctact 22826647  T
Q  177 attcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    ||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  22826646 attcaaaatttttaattatcatttacattatacaatctctttctttctatattt 22826593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 22840963 - 22841088
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    ||||||||||||||||||||||||||||||||| | |||| ||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  22840963 cccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttttact 22841062  T
Q  156 ataattagcattacttctactattca 181  Q
    |||  |||||||||||||||||||||    
T  22841063 atagctagcattacttctactattca 22841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 24272755 - 24272843
Alignment:
Q  70 tatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactata 158  Q
    ||||||||||||||||||||| ||   ||||| |||||  |||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  24272755 tatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcaccaatagttagtgagttttactata 24272843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 15391994 - 15392048
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  15391994 agagtgttgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggata 15392048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 12458581 - 12458665
Alignment:
Q  98 tataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataattagcattacttctactattcaa 182  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||| || ||| ||| |  | | ||||| ||||||||||||    
T  12458581 tataaataaagaccttgtgtgttagtatttcttgtaccaatagttagtaggatttgctagagctggtattacctctactattcaa 12458665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 24284817 - 24284919
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    |||||||| || |||||||| ||||||||||| |  ||| ||||||||||||  | |||||||||| ||||||||| ||||||| | ||||| | |||||    
T  24284817 cccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgcaccaatagtcagtggatgttact 24284916  T
Q  156 ata 158  Q
    |||    
T  24284917 ata 24284919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 2997192 - 2997137
Alignment:
Q  14 agagtgttgggcgtgaggg-ggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||| || |||||||||||||||||||||| |||||||||||||    
T  2997192 agagtgctgggcgtgacggaggtgtattgggaaaaacctaagtcccacatcggata 2997137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 12314546 - 12314601
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||    
T  12314546 agagtgttgggcgtgaggggggtgtattgggaaaaatccaagtcccacatcggata 12314601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 24382494 - 24382440
Alignment:
Q  15 gagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggataa 69  Q
    ||||||||| |||||||||||||||||||||||||| ||  || |||||||||||    
T  24382494 gagtgttggacgtgagggggtgtattgggaaaaacccaaatccaacatcggataa 24382440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 43361686 - 43361633
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  43361686 agagtgctgggcgtgagggggtgtattggg-aaaacccaagtcccacatcggata 43361633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 36332588 - 36332625
Alignment:
Q  23 ggcgtgagggggtgtattgggaaaaacctaagacccac 60  Q
    |||||||||||||||||||||||||||||||| |||||    
T  36332588 ggcgtgagggggtgtattgggaaaaacctaagtcccac 36332625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 3969009 - 3969057
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacat 62  Q
    ||||||||||| |||||||| |||||||||||||||| ||| |||||||    
T  3969009 agagtgttgggtgtgaggggttgtattgggaaaaacccaagtcccacat 3969057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 39649013 - 39648962
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcg 64  Q
    |||||| |||||||||||||| |||||||||||||||| ||| |||||||||    
T  39649013 agagtgatgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcg 39648962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 22892824 - 22892774
Alignment:
Q  14 agagtgttgggcgtgaggg-ggtgtattgggaaaaacctaagacccacatc 63  Q
    |||||||||||||||| || |||||||||||||||||| ||| ||||||||    
T  22892824 agagtgttgggcgtgacggaggtgtattgggaaaaacccaagtcccacatc 22892774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 24382703 - 24382649
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||| |||||| | ||| |||||||||||||    
T  24382703 agagtgctgggcgtgaggggatgtattgagaaaaaaccaagtcccacatcggata 24382649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 49142651 - 49142705
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||  ||| |||||||||||||||||||| ||| ||||||| |||||    
T  49142651 agagtgttgggtatgatggggtgtattgggaaaaacccaagtcccacattggata 49142705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 5325062 - 5325006
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggataa 69  Q
    |||||| |||||||||||||| ||||||||||||||   ||| ||||||||||||||    
T  5325062 agagtgctgggcgtgaggggggtgtattgggaaaaattcaagtcccacatcggataa 5325006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 25889618 - 25889786
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    |||||||||||||| |||||||  |||||||||   |||| ||||||||||||  ||||| ||||||||||||||| ||||||| |||||||||||| ||    
T  25889618 cccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtgggttttgct 25889717  T
Q  156 ataattagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttct 224  Q
    |||  ||||| ||| |||| |||| |   ||||||||||||||||||| ||||||||| ||||||||||    
T  25889718 atagctagcagtacctctattatttagtctttgtaattatcaattacattatacaattcctttctttct 25889786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 30046417 - 30046560
Alignment:
Q  61 atcggataatatgaagaaa--tatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactata 158  Q
    ||||||||||||||| |||  ||||||||||| ||   |||||||||||| | |||||||||||||||||||||| ||||| ||||| |||||| |||||    
T  30046417 atcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttgta-caatagttagtcggttttgctata 30046515  T
Q  159 attagcattacttctactattcaaaatttgtaattatcaattaca 203  Q
      |||| |||| |||||||||||| || || ||||||| ||||||    
T  30046516 gctagcgttacctctactattcaatatatgcaattatcgattaca 30046560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 31141400 - 31141533
Alignment:
Q  58 cacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactat 157  Q
    |||||| || |||| |||||||||||||||||  | |  ||||||||||||  |||| |||||||||||||||  ||||||| | |||  | ||| ||||    
T  31141400 cacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaatagtaagtaag-tttgctat 31141498  T
Q  158 aattagcattacttctactattcaaaatttgtaat 192  Q
    |||| | ||||| |||||||||||| |||||||||    
T  31141499 aattggtattacctctactattcaatatttgtaat 31141533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 9264222 - 9264167
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  9264222 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 9264167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 21833493 - 21833548
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggataa 69  Q
    |||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||||    
T  21833493 agagtgttggtcgtgagggggtgtattgagaaaaacccaagtcccacattggataa 21833548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 22407577 - 22407522
Alignment:
Q  14 agagtgttgggcgtgaggg-ggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  22407577 agagtgctgggcgtgagggaggtgtattgggaaaaatctaagtcccacatcggata 22407522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 50692494 - 50692549
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  50692494 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 50692549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 32034264 - 32034319
Alignment:
Q  14 agagtgttgggcgtga-gggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||| ||||||||||| ||||||||||| | |||||||||||||    
T  32034264 agagtgctgggcgtgacgggggtgtattaggaaaaacctatgtcccacatcggata 32034319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 35015453 - 35015508
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||| | ||| |||||||||||||    
T  35015453 agagtgctgggcgtgaggggggtgtattgggaaaaagccaagtcccacatcggata 35015508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 42258878 - 42258933
Alignment:
Q  14 agagtgttgggcgtga-gggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  42258878 agagtgctgggcgtgatgggggtgtattgggaaaaatccaagtcccacatcggata 42258933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 49477502 - 49477557
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| ||| |||||||||||| ||| |||||||||||||    
T  49477502 agagtgctgggcgtgaggggggtgtgttgggaaaaacccaagtcccacatcggata 49477557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 25579029 - 25578999
Alignment:
Q  58 cacatcggataatatgaagaaatatgcaaag 88  Q
    |||||||||||||||||||||||||||||||    
T  25579029 cacatcggataatatgaagaaatatgcaaag 25578999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 9264422 - 9264374
Alignment:
Q  21 tgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||| |||||||||||||| | ||| |||||||||||||    
T  9264422 tgggcgtgaggggggtgtattgggaaaaatccaagtcccacatcggata 9264374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 19670673 - 19670789
Alignment:
Q  65 gataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataattagc 164  Q
    |||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||  ||||    
T  19670673 gataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtgggttttgctatagctagc 19670772  T
Q  165 attacttctactattca 181  Q
     |||| |||||||||||    
T  19670773 gttacctctactattca 19670789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 32795665 - 32795496
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttact 155  Q
    ||||||||||||||||||||||||||||||||||| | || |||| |||||||  |||| |||| |||||| |||||||||||| |||||||||||| ||    
T  32795665 cccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagttagtgggttttgct 32795566  T
Q  156 ataattagcattacttctactattca--aaatttgtaattatcaattacactatacaatttctttctttct 224  Q
    |||| || | |||| ||||||| |||   ||| ||||||||| ||||| | ||||||||| ||||||||||    
T  32795565 ataactaacgttacctctacta-tcatgtaatatgtaattattaattaaattatacaattcctttctttct 32795496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 32796429 - 32796345
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataa 140  Q
    |||| |||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||| |||| || |||||    
T  32796429 cccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcacaaataa 32796345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 3015552 - 3015498
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3015552 agagtgatgggcgtgagggggtgtattgggaaaaacccaagccccacatcggata 3015498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 39268195 - 39268249
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  39268195 agagtgctgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggata 39268249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 26896586 - 26896649
Alignment:
Q  68 aatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttg 131  Q
    |||| |||||||||||||||||| |||  ||||||||||| || ||||||||||||||||||||    
T  26896586 aataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttg 26896649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 11632400 - 11632454
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||    
T  11632400 agagtgttgggcgtgagggggtgtattggaaaaaatccaagtcccacatcggata 11632454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 28156208 - 28156261
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggat 67  Q
    |||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  28156208 agagtgctgggcatgagggggtgtattgggaaaaacccaagtcccacatcggat 28156261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 48240 - 48185
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  48240 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 48185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 2908698 - 2908643
Alignment:
Q  14 agagtgttgggcgtgag-ggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  2908698 agagtgctgggcgtgagaggggtgtattgggaaaaacccaagtcccacatcggata 2908643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 34457271 - 34457326
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  34457271 agagtgatgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 34457326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 43490392 - 43490337
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  43490392 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 43490337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 18107613 - 18107559
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||  |||||| |||||||||||||||||||| ||| |||||||||||||    
T  18107613 agagtgtttagcgtgacggggtgtattgggaaaaacccaagtcccacatcggata 18107559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 18914295 - 18914242
Alignment:
Q  16 agtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||| |||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  18914295 agtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 18914242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 37656865 - 37656813
Alignment:
Q  16 agtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||||||||| ||||||  ||| | |||||||||||    
T  37656865 agtgttgggcgtgagggggtgtattggaaaaaactcaagtctcacatcggata 37656813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 13413758 - 13413813
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||| |||||| |||||||||||||||| ||| |||||||||||||    
T  13413758 agagtgctgggcgtaagggggatgtattgggaaaaacccaagtcccacatcggata 13413813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 3763069 - 3763123
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||| | |||||||||||||||||| | | |||||||||||||    
T  3763069 agagtgatgggcgtgacgaggtgtattgggaaaaacccatgtcccacatcggata 3763123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 17130118 - 17130065
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||  |||||||| |||||||||||||||| ||| |||||||||||||    
T  17130118 agagtgttggatgtgagggg-tgtattgggaaaaacccaagtcccacatcggata 17130065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2716517 - 2716570
Alignment:
Q  16 agtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggataa 69  Q
    |||| |||||||||||||||||||||||||| ||| ||| |||| || ||||||    
T  2716517 agtgctgggcgtgagggggtgtattgggaaatacccaagtcccagattggataa 2716570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 37965614 - 37965519
Alignment:
Q  58 cacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaa-accttgtgtgttagtatttcttgtaccaataattagtgggtttt 152  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||  | |||||||||||||||||||| ||||||| ||| ||||||||    
T  37965614 cacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcaccaatagttaatgggtttt 37965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 10128496 - 10128584
Alignment:
Q  57 ccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagt 145  Q
    |||||||||| |||||||||||||||| |||||| |||| ||||||||||||  ||||||||||||||||||||| ||||||| |||||    
T  10128496 ccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagt 10128584  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 8761308 - 8761182
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgt-ggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttac 154  Q
    |||||||| ||||||||||||||||||||||| || | ||| ||||||||||||  ||||||||||||||||||||| ||||||  ||||||| ||||      
T  8761308 cccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaattgttagtggattttgt 8761209  T
Q  155 tataattagcattacttctactattca 181  Q
    ||||  ||||||||  |||||||||||    
T  8761208 tatagctagcattatctctactattca 8761182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 29695474 - 29695420
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||||||||||||||||||| ||| | |||||||||||    
T  29695474 agagtgctgggcgtgagggggtgtattgggaaaaacccaagtctcacatcggata 29695420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 33985904 - 33985850
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||    
T  33985904 agagtgttgggcgtgaaggggtgtattggcaaaaacccaagtcccacatcggata 33985850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 883737 - 883682
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  883737 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 883682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 884025 - 884080
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  884025 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 884080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 17727372 - 17727427
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  17727372 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 17727427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 19860005 - 19860060
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  19860005 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 19860060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 40009942 - 40009997
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  40009942 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 40009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 32667151 - 32667206
Alignment:
Q  14 agagtgttgggcgtga-gggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||| ||||||||||||||||||||| ||| |||||||| ||||    
T  32667151 agagtgctgggcgtgacgggggtgtattgggaaaaaccgaagtcccacatcagata 32667206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 3435415 - 3435381
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaa 48  Q
    |||||||||||| ||||||||||||||||||||||    
T  3435415 agagtgttgggcatgagggggtgtattgggaaaaa 3435381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 8044681 - 8044627
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||| ||||||||||||||||||||||||| ||| ||| |||| ||||    
T  8044681 agagtgctgggtgtgagggggtgtattgggaaaaacccaagtcccgcatcagata 8044627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 25082786 - 25082820
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaa 48  Q
    ||||||||||||||||||||||||| |||||||||    
T  25082786 agagtgttgggcgtgagggggtgtaatgggaaaaa 25082820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 15140802 - 15140854
Alignment:
Q  56 cccacatcggataatatgaagaaatatgcaaagacgtggttatataaataaaa 108  Q
    |||||||||| ||| ||||||||||||| |||||  |||| ||||||||||||    
T  15140802 cccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaa 15140854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 22447274 - 22447310
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacc 50  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  22447274 agagtgctggacgtgagggggtgtattgggaaaaacc 22447310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 25550091 - 25550174
Alignment:
Q  74 aagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactata 158  Q
    |||||||||| |||||  |||  ||||||||||||  ||||||||| ||||||||||| || |||| ||||||| |||| |||||    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtgt-agtatttcttggactaatagttagtggattttcctata 25550174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 31761123 - 31761155
Alignment:
Q  36 gtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||| |||||||||||||    
T  31761123 gtattgggaaaaacctaagtcccacatcggata 31761155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 260286 - 260217
Alignment:
Q  70 tatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaata 139  Q
    ||||||||||||||||||||| | || | |||||||||| |||||||||||||||||||||| |||||||    
T  260286 tatgaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaata 260217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 42001905 - 42001989
Alignment:
Q  99 ataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggttttactataattagcattacttctactattcaaa 183  Q
    ||||||||||  |||||||||||||| | |||| ||||||| ||||| |||||| |||||  |||||||||||||||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctataggtagcattacttctactattcaaa 42001989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 45122280 - 45122334
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||    
T  45122280 agagtgttgggtgtgagggggtgtattgggaaaaacccaagtcccacatctgata 45122334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 8559814 - 8559759
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  8559814 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 8559759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 43599486 - 43599541
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  43599486 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggata 43599541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 25186741 - 25186795
Alignment:
Q  14 agagtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||| || ||||||||| ||||||||||| |||||||||||||    
T  25186741 agagtgctgggcgtgacggagtgtattggaaaaaacctaagtcccacatcggata 25186795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 33435864 - 33435906
Alignment:
Q  26 gtgagggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  33435864 gtgagggggtgtattgggaaaaacccaagtcccacatcggata 33435906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 33897214 - 33897300
Alignment:
Q  66 ataatatgaagaaatatgcaaagacgtggttatataaataaaaaccttgtgtgttagtatttcttgtaccaataattagtgggtttt 152  Q
    |||||| ||||||||||| |||||  ||   ||||||||||||  ||||||||||||||||| ||  ||||||||||||| ||||||    
T  33897214 ataataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttacaccaataattagtaggtttt 33897300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 15857151 - 15857202
Alignment:
Q  18 tgttgggcgtgagg-gggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||| ||||||||||||||||||  ||| |||||||||||||    
T  15857151 tgttgggcgtgaggtgggtgtattgggaaaaactcaagtcccacatcggata 15857202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 30065959 - 30066014
Alignment:
Q  14 agagtgttgggcgtga-gggggtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||||||||||||| ||||||||||||||||||||  ||| |||||||| ||||    
T  30065959 agagtgttgggcgtgacgggggtgtattgggaaaaactcaagtcccacatcagata 30066014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 35561634 - 35561689
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| |||||||||||||| ||| |||||||||||| ||| |||||||||||||    
T  35561634 agagtgctgggcgtgaggggggtgtgttgggaaaaacccaagtcccacatcggata 35561689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 39124895 - 39124948
Alignment:
Q  16 agtgttgggcgtgagggggtgtattgggaaaaacctaagacccacatcggataa 69  Q
    |||| ||||| |||||||||||||||||||||||| | | ||||||| ||||||    
T  39124895 agtgctgggcatgagggggtgtattgggaaaaacccaggtcccacattggataa 39124948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 44441065 - 44441098
Alignment:
Q  16 agtgttgggcgtgagggggtgtattgggaaaaac 49  Q
    |||||||||||||||||| |||||||||||||||    
T  44441065 agtgttgggcgtgaggggatgtattgggaaaaac 44441098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 15010958 - 15010902
Alignment:
Q  14 agagtgttgggcgtgaggggg-tgtattgggaaaaa-cctaagacccacatcggata 68  Q
    |||||| |||||||||||||| |||||||||||||| || ||| |||||||||||||    
T  15010958 agagtgctgggcgtgaggggggtgtattgggaaaaaccccaagtcccacatcggata 15010902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 148427 - 148491
Alignment:
Q  161 tagcattacttctactattcaaaatttgtaattatcaattacactatacaatttctttctttctatattt 230  Q
    |||||||||||||||||||     ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  148427 tagcattacttctactatt-----tttgtaattatcaattacattatacaatttcgttctttctatattt 148491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 13481 - 13536
Alignment:
Q  14 agagtgttgggcgtgagggg-gtgtattgggaaaaacctaagacccacatcggata 68  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||| ||||||||    
T  13481 agagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccaaatcggata 13536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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