View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774_high_9 (Length: 369)
Name: NF4774_high_9
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 40126002 - 40125665
Alignment:
| Q |
18 |
attcggtctcacctcgagcgtctcatcaacaatttcaggccaattagatcttaatcagatactcaaattactagcgttgtatttaaacttggagaaatgt |
117 |
Q |
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| T |
40126002 |
attcggtctcacctcgagcgtctcatcaacaatttcaggccaattagatcttaatcagatactcaaattactagcgttgtatttaaacttcgagaaatgt |
40125903 |
T |
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| Q |
118 |
ttgaattgaaaatcttagttgtacagcatatgtgaagggtgacttccctctatgatttgagagttaattctttaatttgttgaaggggatgcataaaact |
217 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125902 |
ttgaattgcaaatcttagttgtacagcatatgggaagggtgacttccctctatgatctgagagttaattctttaatttgttgaaggggatgcataaaact |
40125803 |
T |
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| Q |
218 |
gaaaacaataatcacatgaaatatgaagagaggttgttaagtaaaaacctgcatttcnnnnnnnnnnnnnnnnnncctgcatttctacaatgtgtggcca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40125802 |
gaaaacaataatcacatgaaatatgaagagaggttgttaagtaaaaacctgcatttcaaaaagaaaattaaaaaacctgcatttctacaatgtgtggcca |
40125703 |
T |
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| Q |
318 |
tatagccaatttaggatcacaaaaatcatttacctatg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40125702 |
tatagccaatttaggatcacaaaaatcatttacctatg |
40125665 |
T |
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