View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4774_low_1 (Length: 772)

Name: NF4774_low_1
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4774_low_1
NF4774_low_1
[»] chr4 (1 HSPs)
chr4 (12-753)||(49593083-49593816)
[»] chr5 (1 HSPs)
chr5 (399-552)||(7233684-7233836)
[»] chr6 (2 HSPs)
chr6 (563-628)||(5605236-5605301)
chr6 (556-604)||(15528431-15528479)
[»] chr2 (2 HSPs)
chr2 (563-628)||(26051198-26051263)
chr2 (584-626)||(15996828-15996870)
[»] chr1 (2 HSPs)
chr1 (556-625)||(25901873-25901942)
chr1 (584-622)||(37596576-37596614)
[»] chr7 (2 HSPs)
chr7 (563-626)||(31765455-31765518)
chr7 (562-624)||(6271374-6271436)
[»] chr8 (1 HSPs)
chr8 (562-600)||(8753330-8753368)
[»] chr3 (1 HSPs)
chr3 (566-628)||(50170574-50170636)


Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 12 - 753
Target Start/End: Complemental strand, 49593816 - 49593083
Alignment:
Q  12 acagatgggatcactacactcaaatccatgtcaaacaagctcatcttcaaataaaaaataataattcgcacaccctacaaacaagtaacaacaactactc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49593816 acagatgggatcactacactcaaatccatgtcaaacaagctcatcttcaaataaaaaataataattcgcacaccctacaaacaagtaacaacaactactc 49593717  T
Q  112 tgaacctgaaatcatcacaaaaaacgaagaatatgtaccagttagtcatgcactcttcattatcatagtgtgatataatatgtaacaatttttagtannn 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       
T  49593716 tgaacctgaaatcatcacaaaaaacgaagaatatgtaccagttagtcatgcactcttcattatcatagtgtgatataatatgtaacattttttagtattt 49593617  T
Q  212 nnnnggtgaatcagctaatctacacaaataattattctaaccttacaacaaactgagatgttttattagacagacatcaatagttaaaagagaatcacnn 311  Q
        ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||      
T  49593616 ttttggtgaatcagctaatctacacaaatgattattctaaccttacaacaaacttagatgtttaattagacagacatcaatagttaaaagagaatcactt 49593517  T
Q  312 nnnnnnataaagataatttagggtgagggg-tgatctggtacaaggtagagaaaacctt-caaattcaaagatatttatatttataaataaatttacatt 409  Q
          |||||||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||      ||||||||||||||    
T  49593516 ttttt-ataaagataatttagggtgagggggtaatctggtacaaggtagagaaaatctttcaaattcaaagatatttata------aataaatttacatt 49593424  T
Q  410 tatttctctctaaggacatttgcgggtctcgaacccggaacatccaggtccaagaacaaacccttgaaattagaagagaatcaccttcacgtctcttata 509  Q
    ||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  49593423 tatttttctctgaggacatttgcgtgtctcgaacccggaacctccaggtccaagaccaaacccttgaaattaaaagagaatcaccttcacgtctcttata 49593324  T
Q  510 tttttcatctcaaatgacatatattaattttaaaataatcacacaaaaattctaagaaaaaccttctacaattagtttcttaacttatgccccaaaagta 609  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  49593323 tttttcatctcaaatgacatat--taattttaaaataatcacacaaaaattctaagaaaaaccttctacaattagtttcttaacttatgcccaaaaa-ta 49593227  T
Q  610 taagttagcatttccctttattttaatacgttatttatacaggtgagactataagacaaaaccattagttaaggtaatcctaggaaatttaggtgaaggg 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49593226 taagttagcatttccctttattttaatacgttatttatacaggtgagactataagacaaaaccattagttaaggtaatcctaggaaatttaggtgaaggg 49593127  T
Q  710 cacaagattgtgatcaagttgttactacatagctacaactctat 753  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49593126 cacaagattgtgatcaagttgttactacatagctacaactctat 49593083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 399 - 552
Target Start/End: Original strand, 7233684 - 7233836
Alignment:
Q  399 aaatttacatttatttctctctaaggacatttgcgggtctcgaacccggaacatccaggtccaagaacaaacccttgaaattagaagagaatcaccttca 498  Q
    |||||||||||||  || |||||| |  ||||| |||||| ||| ||||||| || ||||| ||||  ||||||||||| ||| ||||||||||| ||||    
T  7233684 aaatttacatttacctccctctaaaggtatttgtgggtcttgaatccggaacttctaggtctaagacgaaacccttgaagttaaaagagaatcactttca 7233783  T
Q  499 cgtctcttatatttttcatctcaaatgacatatattaattttaaaataatcaca 552  Q
     ||||||| |||||||||| |||||| |||  |||| | |||||||||||||||    
T  7233784 tgtctcttgtatttttcatttcaaataacaattattga-tttaaaataatcaca 7233836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 628
Target Start/End: Complemental strand, 5605301 - 5605236
Alignment:
Q  563 aagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcccttt 628  Q
    ||||||||||||||||| ||  ||||||||||||||||||||| | | || ||| |||||||||||    
T  5605301 aagaaaaaccttctacatttgatttcttaacttatgccccaaaggcacaaattatcatttcccttt 5605236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 15528431 - 15528479
Alignment:
Q  556 aaattctaagaaaaaccttctacaattagtttcttaacttatgccccaa 604  Q
    |||||| |||||||| |||||||| ||||||| ||||||||||||||||    
T  15528431 aaattccaagaaaaatcttctacatttagttttttaacttatgccccaa 15528479  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 628
Target Start/End: Complemental strand, 26051263 - 26051198
Alignment:
Q  563 aagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcccttt 628  Q
    ||||||| ||||||||| |||||||||||||||||| ||||| || | |||||| ||| |||||||    
T  26051263 aagaaaatccttctacatttagtttcttaacttatgtcccaagagcacaagttaacatctcccttt 26051198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 626
Target Start/End: Original strand, 15996828 - 15996870
Alignment:
Q  584 gtttcttaacttatgccccaaaagtataagttagcatttccct 626  Q
    ||||||||||||||||||||| |||| |||||| |||||||||    
T  15996828 gtttcttaacttatgccccaagagtacaagttaacatttccct 15996870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 625
Target Start/End: Original strand, 25901873 - 25901942
Alignment:
Q  556 aaattctaagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttccc 625  Q
    |||||| ||||||||||||||| | |||||||||||||||||| |||||  | | |||||| ||||||||    
T  25901873 aaattccaagaaaaaccttctagatttagtttcttaacttatgtcccaagggcacaagttaacatttccc 25901942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 622
Target Start/End: Original strand, 37596576 - 37596614
Alignment:
Q  584 gtttcttaacttatgccccaaaagtataagttagcattt 622  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  37596576 gtttgttaacttatgccccaaaagtataagttaacattt 37596614  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 626
Target Start/End: Original strand, 31765455 - 31765518
Alignment:
Q  563 aagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttccct 626  Q
    |||||||| |||||||| || |||||||||||||||||||||| | | ||||| | ||||||||    
T  31765455 aagaaaaaacttctacatttggtttcttaacttatgccccaaaggcacaagttggaatttccct 31765518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 562 - 624
Target Start/End: Original strand, 6271374 - 6271436
Alignment:
Q  562 taagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcc 624  Q
    |||||||||| ||||||| ||  ||||||||||||||||||||  | |||||||| |||||||    
T  6271374 taagaaaaactttctacatttgctttcttaacttatgccccaagggcataagttaacatttcc 6271436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 562 - 600
Target Start/End: Original strand, 8753330 - 8753368
Alignment:
Q  562 taagaaaaaccttctacaattagtttcttaacttatgcc 600  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  8753330 taagaaaaacattctacatttagtttcttaacttatgcc 8753368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 628
Target Start/End: Original strand, 50170574 - 50170636
Alignment:
Q  566 aaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcccttt 628  Q
    ||||| |||||||| || |||||||||||||||||||||  | | |||||| |||||||||||    
T  50170574 aaaaaacttctacatttggtttcttaacttatgccccaagggcacaagttaacatttcccttt 50170636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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