View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774_low_10 (Length: 338)
Name: NF4774_low_10
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 322
Target Start/End: Original strand, 27976746 - 27977056
Alignment:
| Q |
12 |
tcatcagcccatggccttagaacccttgagaagctcatggctgaccaagataagcagcaaaacctttcggatttagaaaagaaattccgttcagaccttg |
111 |
Q |
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| T |
27976746 |
tcatcagcccatggccttagaacccttgagaagctcatggctgaccaagataagcggcaaaacctttcggatttagaaaagaaattccgttcagaccttg |
27976845 |
T |
|
| Q |
112 |
acgacctcctcgaggaaaatctcgagttttggctaagatttagcacattagttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagcata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | | |
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| T |
27976846 |
acgacctcctcgaggaaaatctcgagttttggctaagatttagcacatcagttcatcagattcaaaagtttcaaaactcaatacaagacttaaaagtaga |
27976945 |
T |
|
| Q |
212 |
actaaggacaataaaggaaaacaacaaatccgaaggacattcgcattctaaacatcaacaacctatgcaatctcaacttaggccgatttttcgacattta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27976946 |
actaaggacaataaaggaaaacaacaaatccgaaggacattcacattctaaacatcaacaacctatgcaatctcaacttaggccgatttttcgacattta |
27977045 |
T |
|
| Q |
312 |
agagagattag |
322 |
Q |
| |
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||||||||||| |
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| T |
27977046 |
agagagattag |
27977056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 28306649 - 28306709
Alignment:
| Q |
161 |
agttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagcataactaaggaca |
221 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||| || ||||||||||| |
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| T |
28306649 |
agttaatcagattcaaaagtttcaaaactcaatttaggacttaaattcagaactaaggaca |
28306709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 46039906 - 46039829
Alignment:
| Q |
150 |
tttagcacattagttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagcataactaaggacaataaag |
227 |
Q |
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|||||||| | ||||||||| ||||||||||| ||| | || ||||||||||||||| | ||||||| | ||||||| |
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| T |
46039906 |
tttagcacttcagttcatcaaattcaaaagttccaacaatctttacaggacttaaaagtagaactaagaaaaataaag |
46039829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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