View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774_low_12 (Length: 321)
Name: NF4774_low_12
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 29582195 - 29582490
Alignment:
| Q |
11 |
aatgaggatgttctcatcaatcaagaacaacttttggaggtttttcgctcgtttgatcgcgatggtaacggttacatcaccgcggctgagcttgccggat |
110 |
Q |
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| T |
29582195 |
aatgaggatgttctcatcaatcaagaacaacttttggaggtttttcgctcgtttgatcgcgatggtaacggttacatcaccgcggctgagcttgccggat |
29582294 |
T |
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| Q |
111 |
ccatggcaaagatgggccatcctctaacataccatgagcttgctaacatgatggctgaagctgatagcaatggtgatggtgttattagtttcaatgagtt |
210 |
Q |
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| T |
29582295 |
ccatggcaaagatgggccatcctctaacataccatgagcttgctaacatgatggctgaagctgatagcaatggtgatggtgttattagtttcaatgagtt |
29582394 |
T |
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| Q |
211 |
tgctaccattttggctaaatcagctgctgattttcttggtgttaaggtgcactagatatatgattaatcaaccttcttgatgaaagttaaatcatg |
306 |
Q |
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| T |
29582395 |
tgctaccattttggctaaatcagctgctgattttcttggtgttaaggtgcactagatatatgattaatcaaccttcttgatgaaagttaaatcatg |
29582490 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 46040907 - 46040970
Alignment:
| Q |
180 |
atggtgatggtgttattagtttcaatgagtttgctaccattttggctaaatcagctgctgattt |
243 |
Q |
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|||||||||||||||||||||| | |||||||||||| ||| ||||| ||| ||| ||||||| |
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| T |
46040907 |
atggtgatggtgttattagttttagtgagtttgctactattatggctcgatctgcttctgattt |
46040970 |
T |
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