View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774_low_14 (Length: 270)
Name: NF4774_low_14
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 27976506 - 27976769
Alignment:
| Q |
4 |
atgaagaatgctcttgtgacaatggacaaagagatacaatttttaaatcagaagataaacggtccagacacaaatccagacgaaagtccatacacaacaa |
103 |
Q |
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| T |
27976506 |
atgaagaatgctcttgtgacaagggacaaagagatacaatttttaaatcagaagataaacggtccagacacaaatccagacgaaagtccatacacaacaa |
27976605 |
T |
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| Q |
104 |
ccacataatacaaatatacaccacatgaaggactttttagaaaatcaggtcaaggatccaacatgcaggaggatactgatacttcatctctaaacatcga |
203 |
Q |
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| T |
27976606 |
ccacagaatacaaatatacaccacatgaagcactttttagaaaatcaggtcaaggatccaacatgc---aggatactgatacttcatctctaaacatcga |
27976702 |
T |
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| Q |
204 |
caacaattctatcagaacatctttcgcagaccaacatgaaaactcatcagcccatggccttagaacc |
270 |
Q |
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| T |
27976703 |
caacaattctatcagaacatctttcgcagaccaacatgaaaactcatcagcccatggccttagaacc |
27976769 |
T |
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