View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4774_low_3 (Length: 445)

Name: NF4774_low_3
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4774_low_3
NF4774_low_3
[»] chr8 (3 HSPs)
chr8 (24-197)||(14789288-14789461)
chr8 (293-427)||(14789055-14789186)
chr8 (371-427)||(29640107-29640163)
[»] chr2 (2 HSPs)
chr2 (24-197)||(2705622-2705795)
chr2 (293-427)||(2705899-2706033)
[»] chr5 (6 HSPs)
chr5 (110-185)||(22311520-22311595)
chr5 (365-432)||(22311022-22311089)
chr5 (114-184)||(24275945-24276015)
chr5 (114-184)||(24386198-24386268)
chr5 (110-185)||(36098571-36098646)
chr5 (365-427)||(36098086-36098148)
[»] scaffold0003 (4 HSPs)
scaffold0003 (110-185)||(208111-208186)
scaffold0003 (365-427)||(207626-207688)
scaffold0003 (110-185)||(213163-213238)
scaffold0003 (365-426)||(212679-212740)
[»] scaffold0077 (3 HSPs)
scaffold0077 (110-185)||(48549-48624)
scaffold0077 (110-185)||(58304-58379)
scaffold0077 (365-427)||(47666-47728)
[»] chr3 (1 HSPs)
chr3 (110-185)||(41931940-41932015)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 14789461 - 14789288
Alignment:
Q  24 tagacagcaagaattgtctgaaagacgatcaaattacagtcagacgaaggacaaagataaacaagtggaaataacgagtgtcatagacagagagcacatg 123  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  14789461 tagatagcaggaattgtctgaaagacgatcaaattacagtcagacgaaggataaagataaacaagtggaaataacgagtgtcatagactgagagcacatg 14789362  T
Q  124 atgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatgatgaggcttagtg 197  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||    
T  14789361 atgccattttaggatttgacaaatttctattttgtattgtcacatgttcaaggaacacatgatgaggcttagtg 14789288  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 293 - 427
Target Start/End: Complemental strand, 14789186 - 14789055
Alignment:
Q  293 actgtctatattagaacttacagagcaacattttgactcatcatattctctaggaactcatatgaagcgagcatattctcaaggaactcataacaataga 392  Q
    ||||||||||||||||||||||||||| |||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789186 actgtctatattagaacttacagagcagcattttgattcat---attctctaggaactcatatgaagcgagcatattctcaaggaactcataacaataga 14789090  T
Q  393 gcggggtcaagtagaagaaatattgatgacactac 427  Q
    || ||| ||||||||||||||||||||||||||||    
T  14789089 gcagggccaagtagaagaaatattgatgacactac 14789055  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 427
Target Start/End: Complemental strand, 29640163 - 29640107
Alignment:
Q  371 tcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactac 427  Q
    ||||| ||||||| |||||  |||||| | |||||||||||||| ||||||||||||    
T  29640163 tcaagaaactcatgacaatgaagcgggattaagtagaagaaatagtgatgacactac 29640107  T

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Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 2705622 - 2705795
Alignment:
Q  24 tagacagcaagaattgtctgaaagacgatcaaattacagtcagacgaaggacaaagataaacaagtggaaataacgagtgtcatagacagagagcacatg 123  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  2705622 tagacagcaagaattgtctgaaagacgatcgaattacagtcatacgaaggacaaagataaacaagtggaaataacgaatgtcatagacggagagcacatg 2705721  T
Q  124 atgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatgatgaggcttagtg 197  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  2705722 atgccatttcaggatttgacaaatatctattttgcattgtcacatgttcaaggaacacatggtgaggcttagtg 2705795  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 293 - 427
Target Start/End: Original strand, 2705899 - 2706033
Alignment:
Q  293 actgtctatattagaacttacagagcaacattttgactcatcatattctctaggaactcatatgaagcgagcatattctcaaggaactcataacaataga 392  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  2705899 actgtctatattagaacttactgagcagcattttgattcatcatattctctaggaactcatatgaagcggccatattctcaaggaactcataacaataga 2705998  T
Q  393 gcggggtcaagtagaagaaatattgatgacactac 427  Q
    |||||| |||||||||||||||||||| |||||||    
T  2705999 gcggggccaagtagaagaaatattgataacactac 2706033  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 22311595 - 22311520
Alignment:
Q  110 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 185  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| |||||||||||||| |||||||||    
T  22311595 acagagatcacatgatgccatttaatgatttgacaaatttaaattttacatcgtcacatgttcaaggaacacatga 22311520  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 22311089 - 22311022
Alignment:
Q  365 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactactgatg 432  Q
    ||||| ||||||||||||| |||||  ||||||  ||||||||||||||| |||||||||||| ||||    
T  22311089 atattttcaaggaactcatgacaatgaagcgggaccaagtagaagaaatagtgatgacactacagatg 22311022  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 24276015 - 24275945
Alignment:
Q  114 agagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatg 184  Q
    ||||| ||||||||||||||| ||||||||||||||  |||  |  |||||||||||||||| ||||||||    
T  24276015 agagcccatgatgccatttcaagatttgacaaatttaaattgtgtgttgtcacatgttcaaggaacacatg 24275945  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 24386198 - 24386268
Alignment:
Q  114 agagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatg 184  Q
    ||||| ||||||||||||||| ||||||||||||||  |||  |  |||||||||||||||| ||||||||    
T  24386198 agagcccatgatgccatttcaagatttgacaaatttaaattgtgtgttgtcacatgttcaaggaacacatg 24386268  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 36098646 - 36098571
Alignment:
Q  110 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 185  Q
    ||||||| |||||||||| |||| | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  36098646 acagagatcacatgatgctatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 36098571  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 36098148 - 36098086
Alignment:
Q  365 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactac 427  Q
    ||||| |||||||||| || |||||  ||||||  ||||||||||||||| ||||||||||||    
T  36098148 atattttcaaggaactaatgacaatgaagcgggaccaagtagaagaaatagtgatgacactac 36098086  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 208186 - 208111
Alignment:
Q  110 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 185  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  208186 acagagatcacatgatgccatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 208111  T

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Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 207688 - 207626
Alignment:
Q  365 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactac 427  Q
    ||||| ||||||||||||| |||||  ||||||  ||||||||||||||| ||||||||||||    
T  207688 atattttcaaggaactcatgacaatgaagcgggaccaagtagaagaaataatgatgacactac 207626  T

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Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 213238 - 213163
Alignment:
Q  110 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 185  Q
    ||||||| ||||||||||||| | | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  213238 acagagatcacatgatgccatctaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 213163  T

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Target: scaffold0003; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 212740 - 212679
Alignment:
Q  365 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacacta 426  Q
    ||||| ||||||||||||| |||||  ||||||  ||||||||||||||| | |||||||||    
T  212740 atattttcaaggaactcatgacaatgaagcgggaccaagtagaagaaatagttatgacacta 212679  T

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Target: scaffold0077 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 48624 - 48549
Alignment:
Q  110 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 185  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||  |||||||| |||||||||    
T  48624 acagagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatga 48549  T

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Target: scaffold0077; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 58379 - 58304
Alignment:
Q  110 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 185  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||  |||||||| |||||||||    
T  58379 acagagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatga 58304  T

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Target: scaffold0077; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 47728 - 47666
Alignment:
Q  365 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactac 427  Q
    ||||| ||||||||||||| |||||  |||||   ||||||||||||||| ||||||||||||    
T  47728 atattttcaaggaactcatgacaatgaagcggaaccaagtagaagaaatagtgatgacactac 47666  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 41931940 - 41932015
Alignment:
Q  110 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 185  Q
    ||||||| ||||||||||||| | | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  41931940 acagagatcacatgatgccatgtaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 41932015  T

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