View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4774_low_6 (Length: 379)
Name: NF4774_low_6
Description: NF4774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4774_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 25039623 - 25039273
Alignment:
| Q |
11 |
cagagacaggtgaagcactagaactccaaacaaacatatgaagatcttcttgtttctgttgactttgaccattacttttcttagcattaacactaacatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25039623 |
cagagacaggtgaagcactagaactccaaacaaacatatgaagatcttcttgtttctgttgactttgaccattactcttcttagcattaacactaacatt |
25039524 |
T |
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| Q |
111 |
agaaccaagatttttgctaccattattattattagtaggagaaaacattcctggattaggtgcaggatagtttttgaatttcttagcattattattagct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25039523 |
agaaccaagatttttgctaccattattattattagtaggagaaaacattcctggattaggtgcaggatagtttttgaatttcttagcattattattagct |
25039424 |
T |
|
| Q |
211 |
tcttcttcataattagaaggtcttggagtaacacctcttgaattagcagataaaccataattattaacaacatcattagcaccaaagtttgagtttcttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25039423 |
tcttcttcataattagaaggtcttggagtaacacctcttgaattagcagataaaccatagttattaacaacatcattagcaccaaagtttgagtttcttc |
25039324 |
T |
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| Q |
311 |
catttccaccacccatcatagaataaaaatcagtatgattaaaactagaac |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25039323 |
catttccaccacccatcatagaataaaaatcagtatgattaaaactagaac |
25039273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 34971721 - 34971674
Alignment:
| Q |
11 |
cagagacaggtgaagcactagaactccaaacaaacatatgaagatctt |
58 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34971721 |
cagaaacaggtgaagcacttgaactccaaacaaacatatgaagatctt |
34971674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 34971483 - 34971451
Alignment:
| Q |
327 |
catagaataaaaatcagtatgattaaaactaga |
359 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34971483 |
catagaataaaaatcagtatgattaaaactaga |
34971451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 52717311 - 52717275
Alignment:
| Q |
11 |
cagagacaggtgaagcactagaactccaaacaaacat |
47 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |
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| T |
52717311 |
cagaaacaggtgaagcacttgaactccaaacaaacat |
52717275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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