View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4776-Insertion-1 (Length: 991)
Name: NF4776-Insertion-1
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776-Insertion-1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 833; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 8 - 985
Target Start/End: Original strand, 11747165 - 11748135
Alignment:
| Q |
8 |
gaattgtttctatcaggaataagggaaatatacgaacagaaagttacccactgtgtagttcataaaatactaagttgcttgtgcnnnnnnnttccagctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | || |
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|
| T |
11747165 |
gaattgtttctatcaggaataagggaaatatacgaacagaaagttacccactgtgtagttcataaaatactgagttgcttgtgcaaaaaaattccggttt |
11747264 |
T |
|
| Q |
108 |
taaacgaatctgatttgagggaggcttctgcttacgatgcaatgttgcaagcagcgaagcatggaaatattgagttcatagatgcaatgagaaaagttaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747265 |
taaacgaatctgatttgagggaggcttctgcttacgatgcaatgttgcaagcagcaaagcatggaaatattgagttcatagatgcaatgagaaaagttaa |
11747364 |
T |
|
| Q |
208 |
ccctgacctcttatggactattgataaaaataaaagaggtgtattttcgcatgcagttttgaaccgtagaaaagctgttttcaaactcatacatgatgga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747365 |
ccctgacctcttatggactattgataaaaataaaagaggcgtattttcgcatgcagttttgaaccgtagaaaagctgttttcaaactcatacatgatgga |
11747464 |
T |
|
| Q |
308 |
actgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagggccttcctctgaccttg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747465 |
actgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagggccttcctctgaccttg |
11747564 |
T |
|
| Q |
408 |
atcgtagatctggtcctgctatgcagatgcaaagagagattatgtggttcaaggtgattcatattttctcaccatatatagtttcatgattcatgtatat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747565 |
atcgtagatctggtcctgctatgcagatgcaaagagagattatgtggttcaaggtgattcatattttctcaccatatatagtttcatgattcatgtatat |
11747664 |
T |
|
| Q |
508 |
caaatcttaagactttcaaaaatacatataattaactttgttttaatttataataatgtacattttaaccaggtttttaaatcagtctagctgaacacgt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747665 |
caaatcttaagactttcaaaaatacatataattaactttgttttaatttataataatgtacattttaaccaggtttttaaatcagtctagctgaacacgt |
11747764 |
T |
|
| Q |
608 |
aaacctttaaggttgacttgccaagaaaataaatgtcttgagcttaactcatttatttgaacgagcttaacttaaattatgctttgacttgtttaaaaac |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
11747765 |
aaacctttaaggttgacttgccaagaaaataaatgtcttgagcttaactcatttatttgaacgagcttaacttaaagtatgctttgacttgttt-aaaac |
11747863 |
T |
|
| Q |
708 |
taggaaaacatggacttcatttgttaaccttatatacatgttgannnnnnnnncacaatatacatagtttgctcttaaataaaatcaattaattgaatct |
807 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747864 |
tagtaaaacatggacttcatttgttaaccttatatacatgttga-ttttttttcacaatatacatagtttgctcttaaataaaatcaattaattgaatct |
11747962 |
T |
|
| Q |
808 |
ttatacttttgtgtaggcagtgggagaaattgtgcatcccaagtgtaaggaagcaaaaaatttcagacgataagaagccttcgagaactaatttacagaa |
907 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
11747963 |
ttatacttttgtgtaggcagtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaa-ttcagacgataagaagcc-tcgagaact-atttacagaa |
11748059 |
T |
|
| Q |
908 |
agccacaaggagctggtgaaagctggagaagaaatgggcaaaagatacagcttggttcatttacacttgtagctacac |
985 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
11748060 |
agccacaaggagctggtgaaagctggag-agaaatgggcaaaagatacagc-tggttcatttacacttgttgctacac |
11748135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 128 - 466
Target Start/End: Complemental strand, 11883885 - 11883547
Alignment:
| Q |
128 |
gaggcttctgcttacgatgcaatgttgcaagcagcgaagcatggaaatattgagttcatagatgcaatgagaaaagttaaccctgacctcttatggacta |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||||||||||| | ||| ||||||||||||||| | | |
|
|
| T |
11883885 |
gaggcttcggcttacgatgcaatgttgcaagcagcaaagcatgggattattgagtttatagatgcaatgagaaagggtaatcctgacctcttatgggcca |
11883786 |
T |
|
| Q |
228 |
ttgataaaaataaaagaggtgtattttcgcatgcagttttgaaccgtagaaaagctgttttcaaactcatacatgatggaactgtaaatggacggaagga |
327 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11883785 |
ttgataaaaataaaagaggcgtattttcacatgcaattttgaaccgtagaaaagccgttttcgaactcatacatgattcaactgtaaatggacggaagga |
11883686 |
T |
|
| Q |
328 |
gatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagggccttcctctgaccttgatcgtagatctggtcctgct |
427 |
Q |
| |
|
|||||||||||| || ||||| || ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
11883685 |
gatagttaaatgccgcgtagatgcatttggcaattccatgttgcacttggcaggatatttagggccttcctctgatcttgatcgtagatccggtcctgct |
11883586 |
T |
|
| Q |
428 |
atgcagatgcaaagagagattatgtggttcaaggtgatt |
466 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
11883585 |
atgcagatgcaaagagaaattctatggttcaaggtgatt |
11883547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 113 - 462
Target Start/End: Complemental strand, 11791987 - 11791638
Alignment:
| Q |
113 |
gaatctgatttgagggaggcttctgcttacgatgcaatgttgcaagcagcgaagcatggaaatattgagttcatagatgcaatgagaaaagttaaccctg |
212 |
Q |
| |
|
|||||||| |||| |||||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
11791987 |
gaatctgaactgagagaggcttcagcatacgatgccatgttacaagcagctaagcatggaaatattgagttcatagatgcaatgaggaaagctaaccctg |
11791888 |
T |
|
| Q |
213 |
acctcttatggactattgataaaaataaaagaggtgtattttcgcatgcagttttgaaccgtagaaaagctgttttcaaactcatacatgatggaactgt |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| || ||| ||||||||||||||| || ||| |
|
|
| T |
11791887 |
acctcttatgggctattgataaaaataaaagaggcatattttcacatgcaattttgaaccgtagaaaagaagtgttccaactcatacatgatgcaagtgt |
11791788 |
T |
|
| Q |
313 |
aaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagggccttcctctgaccttgatcgt |
412 |
Q |
| |
|
||||||||| ||||| || |||| |||||||||||| | |||| |||||| | ||||| |||| ||| ||||||||| |||| ||| ||| | ||| |
|
|
| T |
11791787 |
aaatggacgaaaggaaattgttagatgtcgtgtagatgaatttgataatacccttttgcatctggctggaaatttagggccctcctttgatcttcaccgt |
11791688 |
T |
|
| Q |
413 |
agatctggtcctgctatgcagatgcaaagagagattatgtggttcaaggt |
462 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||| | ||||| ||||| |
|
|
| T |
11791687 |
agatctggtcctgctctccaaatgcaaagagagattttatggtttaaggt |
11791638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 113 - 448
Target Start/End: Complemental strand, 11836235 - 11835900
Alignment:
| Q |
113 |
gaatctgatttgagggaggcttctgcttacgatgcaatgttgcaagcagcgaagcatggaaatattgagttcatagatgcaatgagaaaagttaaccctg |
212 |
Q |
| |
|
|||||||| |||| |||||||| || ||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
11836235 |
gaatctgaactgagagaggcttcagcatacgatgcaatattgaaagcagctaagcatggaaatattgagttcatagttgcaatgaaaaaagctaaccctg |
11836136 |
T |
|
| Q |
213 |
acctcttatggactattgataaaaataaaagaggtgtattttcgcatgcagttttgaaccgtagaaaagctgttttcaaactcatacatgatggaactgt |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| || ||| ||||||||||||||| || ||| |
|
|
| T |
11836135 |
acctcttatggtctattgataaaaataaaagaggcatattttcacatgcaattttgaaccgtagaaaagaagtcttccaactcatacatgatgcaagtgt |
11836036 |
T |
|
| Q |
313 |
aaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagggccttcctctgaccttgatcgt |
412 |
Q |
| |
|
||||||||| ||||| || |||| |||||||||||| || |||| |||||| | || || | || ||| ||||||||| |||| ||| ||| | ||| |
|
|
| T |
11836035 |
aaatggacgaaaggaaattgttagatgtcgtgtagatgcatttgataataccctcttacatcttgctggaaatttagggccctcctttgatcttcaccgt |
11835936 |
T |
|
| Q |
413 |
agatctggtcctgctatgcagatgcaaagagagatt |
448 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||| |
|
|
| T |
11835935 |
agatctggtcctgctctccaaatgcaaagagagatt |
11835900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 143 - 303
Target Start/End: Complemental strand, 11760729 - 11760569
Alignment:
| Q |
143 |
gatgcaatgttgcaagcagcgaagcatggaaatattgagttcatagatgcaatgagaaaagttaaccctgacctcttatggactattgataaaaataaaa |
242 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||| | |||||| | ||||||||||||| || |
|
|
| T |
11760729 |
gatgcaatgttgcaggcagctaagaatggaaatattgagttcatagatgcaatgaggaaagctaaccctgacttgttatgggccattgataaaaatagaa |
11760630 |
T |
|
| Q |
243 |
gaggtgtattttcgcatgcagttttgaaccgtagaaaagctgttttcaaactcatacatga |
303 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11760629 |
gaggcatattttcacatgcaattttgaaccgtagaaaagctgttttccaactcatacatga |
11760569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 815 - 985
Target Start/End: Complemental strand, 11882596 - 11882431
Alignment:
| Q |
815 |
tttgtgtaggcagtgggagaaattgtgcatcccaagtgtaaggaagcaaaaaatttcagacgataagaagccttcgagaactaatttacagaaagccaca |
914 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| | | |||||||||||||| ||| || || |||||||||| |||||| |
|
|
| T |
11882596 |
tttgtgtaggcagtggaggaaattgtgcaccccaagtgtaaggaagcaaaaaa-tgctgacgataagaagcc-tcgtgagct-atttacagaaggccaca |
11882500 |
T |
|
| Q |
915 |
aggagctggtgaaagctggagaagaaatgggcaaaagatacagcttggttcatttacacttgtagctacac |
985 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
11882499 |
aggagctggtgaaagccggag-agaaatgggcaaaagatacagc-tggttcatttactcttgttgctacac |
11882431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 898 - 985
Target Start/End: Complemental strand, 11834904 - 11834819
Alignment:
| Q |
898 |
atttacagaaagccacaaggagctggtgaaagctggagaagaaatgggcaaaagatacagcttggttcatttacacttgtagctacac |
985 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
11834904 |
atttacagaaagtcacaaggagctagtgaaagctggagaa-aaatgggcaaaagatacagc-tggttcatttacacttgttgctacac |
11834819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 834 - 983
Target Start/End: Complemental strand, 11790748 - 11790604
Alignment:
| Q |
834 |
aaattgtgcatcccaagtgtaaggaagcaaaaaatttcagacgataagaagccttcgagaactaatttacagaaagccacaaggagctggtgaaagctgg |
933 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||| |||| |||||||||||| | || || ||||||||||||||||||||||| |||||||| || |
|
|
| T |
11790748 |
aaattgtgcaccccaaatgtaaggaagccaaaaatt-cagaagataagaagcct-catgagata-tttacagaaagccacaaggagctagtgaaagccgg |
11790652 |
T |
|
| Q |
934 |
agaagaaatgggcaaaagatacagcttggttcatttacacttgtagctac |
983 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
11790651 |
tgaa-aaatgggcaaaagaaacagc-aggttcatttacacttgttgctac |
11790604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 444
Target Start/End: Complemental strand, 12009527 - 12009392
Alignment:
| Q |
309 |
ctgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagggccttcctctgaccttga |
408 |
Q |
| |
|
|||| |||||||| ||||||||| ||| | |||| ||||| | |||||||||| | |||||||| |||||| | |||||| ||||| ||||| | | | |
|
|
| T |
12009527 |
ctgtcaatggacgaaaggagatacttagacatcgtatagactcatttggcaataacttgttgcacctggcagcacatttaggtccttcatctgatcgtca |
12009428 |
T |
|
| Q |
409 |
tcgtagatctggtcctgctatgcagatgcaaagaga |
444 |
Q |
| |
|
| | ||||| ||| ||||| |||| ||||||||||| |
|
|
| T |
12009427 |
tagcagatccggtgctgctctgcaaatgcaaagaga |
12009392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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