View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4776-Insertion-10 (Length: 223)
Name: NF4776-Insertion-10
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 8780552 - 8780334
Alignment:
| Q |
7 |
agattcttgttcattttgcagcattgctttataaacttctcatttcacctgattattcaacaagtcttaatcagaagcaaataaacaactggtttattaa |
106 |
Q |
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| T |
8780552 |
agattcttgttcattttgcagcattgctttataaacctctcatttcacctgattattcaacaagtcttaatcagaagcaaataaacaactggtttattaa |
8780453 |
T |
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| Q |
107 |
--tcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggatccaagtcatccacactattacatggataatgttcttaccaatt |
204 |
Q |
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| T |
8780452 |
aatcaaagaaaacggcactggaagccttcagaggacatgcagtttgtggtgatggatccaagtcatccacactattacatggataatgttctcaccaatt |
8780353 |
T |
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| Q |
205 |
catatcccatggatctatc |
223 |
Q |
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| T |
8780352 |
catatcccatggatctatc |
8780334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 8791989 - 8791829
Alignment:
| Q |
63 |
tcaacaagtcttaatcagaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggatc |
162 |
Q |
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| T |
8791989 |
tcaacaggtcttgatcagaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggatc |
8791890 |
T |
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| Q |
163 |
caagtcatccacactattacatggataatgttcttaccaattcatatcccatggatctatc |
223 |
Q |
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| T |
8791889 |
caagtcatccacactattacatggataatgttctcaccaattcatatcccatggatctatc |
8791829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 4661623 - 4661706
Alignment:
| Q |
78 |
cagaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
161 |
Q |
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| T |
4661623 |
cagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaagacatgcagtttatggtgatggat |
4661706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 37096948 - 37096867
Alignment:
| Q |
80 |
gaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
161 |
Q |
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| T |
37096948 |
gaagcagatcaacaattggttcattaatcagagaaaacgtcactggaagccttctgaggatatgcaatttgctgtgatggat |
37096867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 14552660 - 14552731
Alignment:
| Q |
78 |
cagaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagttt |
149 |
Q |
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| T |
14552660 |
cagaagcaaattaacaattggtttattaatcaaagaaaacgtcattggaaaccatctgagaatatgcagttt |
14552731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 48282138 - 48282094
Alignment:
| Q |
81 |
aagcaaataaacaactggtttattaatcaaaggaaacggcactgg |
125 |
Q |
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| T |
48282138 |
aagcaaataaataactggtttattaatcaaaggaaaaggaactgg |
48282094 |
T |
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