View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4776-Insertion-11 (Length: 118)
Name: NF4776-Insertion-11
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776-Insertion-11 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 19914035 - 19914145
Alignment:
| Q |
8 |
cacaactcaattatcatacacggatacatcaattccaccatcacatatcacaatttcactgttgtacagaggaattagaacaaaccaatatttatcacaa |
107 |
Q |
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| T |
19914035 |
cacaactcaattatcatacacagatacatcaattccaccatcacatatcacaatttcaccgttgtatagaagaattagaacaaaccactatttatcacaa |
19914134 |
T |
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| Q |
108 |
tctgcaattga |
118 |
Q |
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||||||||||| |
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| T |
19914135 |
tctgcaattga |
19914145 |
T |
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Target: chr6 (Bit Score: 73; Significance: 8e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 31738908 - 31739011
Alignment:
| Q |
8 |
cacaactcaattatcatacacggatacatcaattccaccatcacatatcacaatttcactgttgtacagaggaattagaacaaaccaatatttatcacaa |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
31738908 |
cacagctcaattatcatacacggatacatcaattccaccatca-------caatttcaccgttgtacagaggaattagaacaaaccactatttatcacaa |
31739000 |
T |
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| Q |
108 |
tctgcaattga |
118 |
Q |
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| T |
31739001 |
tctgcaattga |
31739011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 51726253 - 51726168
Alignment:
| Q |
8 |
cacaactcaattatcatacacggatacatcaattccaccatcacatatcacaatttcactgttgtacagaggaattagaacaaacc |
93 |
Q |
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| T |
51726253 |
cacaactcaattatcaaacacagatacatcagttccactagcacatatcacaatttcaccgttgcacaaaggaattagaacaaacc |
51726168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 13938585 - 13938501
Alignment:
| Q |
8 |
cacaactcaattatcatacacggatacatcaattccaccatcacatatcacaatttcactgttgtacagaggaattagaacaaac |
92 |
Q |
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|||| ||||||| ||| |||| ||||||| ||||||||| |||| ||||||||||||| ||| |||||| ||||||||||||| |
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| T |
13938585 |
cacagctcaattttcaaacacaaatacatctattccaccaacacacatcacaatttcaccattgcacagagaaattagaacaaac |
13938501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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