View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4776-Insertion-2 (Length: 910)

Name: NF4776-Insertion-2
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4776-Insertion-2
NF4776-Insertion-2
[»] chr4 (6 HSPs)
chr4 (298-768)||(3670517-3670981)
chr4 (6-294)||(3670190-3670481)
chr4 (828-908)||(3671056-3671136)
chr4 (536-567)||(49211849-49211880)
chr4 (539-573)||(55157627-55157661)
chr4 (539-568)||(3673427-3673456)
[»] chr8 (3 HSPs)
chr8 (801-896)||(9891658-9891752)
chr8 (566-624)||(9891982-9892040)
chr8 (653-703)||(9891871-9891920)
[»] chr7 (2 HSPs)
chr7 (536-567)||(4125478-4125509)
chr7 (536-567)||(24507866-24507897)
[»] chr5 (1 HSPs)
chr5 (536-567)||(7725536-7725567)
[»] scaffold0276 (1 HSPs)
scaffold0276 (537-567)||(2109-2139)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-170; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 298 - 768
Target Start/End: Original strand, 3670517 - 3670981
Alignment:
Q  298 tgaagaacatttaatttggaattagaacgttactcgttagcttggatcctttgtagtcctccggtcggtgcataaaattttgaaccattggatttgaggt 397  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||    
T  3670517 tgaagaacatttaatttggaattagaacgttactcgtcagcttggatcctctgtagtcctccagttggtgcataaaatttcgaaccattggatttgaggt 3670616  T
Q  398 gcaactcaatccaacggtcgagatcttgttacaccgatttgatgactctagaggatctattttccacttatcatgcatgcttttgtgtatattataggaa 497  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670617 gcaactcaatccaacggtcgagatcttgctacaccgatttgatgactctagaggatctattttccacttatcatgcatgcttttgtgtatattataggaa 3670716  T
Q  498 ttctagtctaagaaattgttatagacatctactaatttaactattagaatataaaatattcattgtataatttgtttattttctaattaactttcgtgta 597  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||| |||||    
T  3670717 ttctagtctaagaagttgttatagacatctactaatttaactattagaatataaaatatccattgcataatttatttatttcctaattaacttttgtgta 3670816  T
Q  598 ataatagttttcatttaaataacaaaatgtattttatt-nnnnnnngaaaacaaaggacaggcacgagaatgcccatcttacacactaggttaccaataa 696  Q
    ||| ||||||||||||||||||||||||||||||||||         |||| |||  ||||||||||||||||||||||||||||||| |||  ||||||    
T  3670817 atattagttttcatttaaataacaaaatgtattttattaaaaaaaaaaaaaaaaaaaacaggcacgagaatgcccatcttacacacta-gttgtcaataa 3670915  T
Q  697 aaactacgactcaaataaaaggatagaaatccaaagctgggcatcaaaagaaaccactcgtcatggttcctt 768  Q
    ||||||||||||||   ||||||||| ||||| ||||| |||||| |||||||||||||||||  |||||||    
T  3670916 aaactacgactcaa--taaaggatag-aatcc-aagct-ggcatc-aaagaaaccactcgtcacagttcctt 3670981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 294
Target Start/End: Original strand, 3670190 - 3670481
Alignment:
Q  6 cagtaatcacaacatatgaggggaaacataaccatgatgtacctctaggaagaggaatttcaagcagtagcataaacagaacttctcttaacaacaatac 105  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3670190 cagtaatcacaacatatgaagggaaacataaccatgatgtacctctaggaagaggaatttcaagcagtagcataaacagtacttctcttaacaacaatac 3670289  T
Q  106 atgtaatgttacacctataaggccttcagcagtgactaattattctagcttagcaaattttacaaattcacttcatgattcaaagctaccaacttctgaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670290 atgtaatgttacacctataaggccttcagcagtgactaattattctagcttagcaaattttacaaattcacttcatgattcaaagctaccaacttctgaa 3670389  T
Q  206 aatcaagaacattttcagctggaca---tgatgaactctaaaagctttttggacagatcaattggttcaaataccaattctgaacagtacgc 294  Q
    |||||||||||||||||||||||||   ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3670390 aatcaagaacattttcagctggacatgttgatgaattctagaagctttttggacagatcaattggttcaaataccaattctgaacaatacgc 3670481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 828 - 908
Target Start/End: Original strand, 3671056 - 3671136
Alignment:
Q  828 ccattgcctggaggtagcgtctcacctttcacttccaaccaatatgtctcaag-attttgacagccttcctcacaaatttca 908  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  3671056 ccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagcctt-ctcataaatttca 3671136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 567
Target Start/End: Complemental strand, 49211880 - 49211849
Alignment:
Q  536 aactattagaatataaaatattcattgtataa 567  Q
    ||||||||||||||||||||||||||||||||    
T  49211880 aactattagaatataaaatattcattgtataa 49211849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 539 - 573
Target Start/End: Original strand, 55157627 - 55157661
Alignment:
Q  539 tattagaatataaaatattcattgtataatttgtt 573  Q
    ||||||||||||||||||||||||||||| |||||    
T  55157627 tattagaatataaaatattcattgtataaattgtt 55157661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 568
Target Start/End: Complemental strand, 3673456 - 3673427
Alignment:
Q  539 tattagaatataaaatattcattgtataat 568  Q
    ||||||||||||||||||||||||||||||    
T  3673456 tattagaatataaaatattcattgtataat 3673427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 801 - 896
Target Start/End: Complemental strand, 9891752 - 9891658
Alignment:
Q  801 tctaaagttaaaaccagtttgagaaacccattgcctggaggtagcgtctcacctttcacttccaaccaatatgtctcaag-attttgacagccttcc 896  Q
    ||||||||||||||||| |||||||  ||||||||||||| | ||||||||||||   |||||||||||||||||||||| ||||||||||||||||    
T  9891752 tctaaagttaaaaccaggttgagaa--ccattgcctggagatggcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttcc 9891658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 566 - 624
Target Start/End: Original strand, 9891982 - 9892040
Alignment:
Q  566 aatttgtttattttctaattaactttcgtgtaataatagttttcatttaaataacaaaa 624  Q
    ||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  9891982 aatttatttatttcctaattaacttttgtgtaatattagttttcatttaaataacaaaa 9892040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 703
Target Start/End: Complemental strand, 9891920 - 9891871
Alignment:
Q  653 gacaggcacgagaatgcccatcttacacactaggttaccaataaaaactac 703  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  9891920 gacaggcacgagaatggccatcttacacacta-gttaccaataaaaactac 9891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 4125478 - 4125509
Alignment:
Q  536 aactattagaatataaaatattcattgtataa 567  Q
    ||||||||||||||||||||||||||||||||    
T  4125478 aactattagaatataaaatattcattgtataa 4125509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 567
Target Start/End: Complemental strand, 24507897 - 24507866
Alignment:
Q  536 aactattagaatataaaatattcattgtataa 567  Q
    ||||||||||||||||||||||||||||||||    
T  24507897 aactattagaatataaaatattcattgtataa 24507866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 567
Target Start/End: Original strand, 7725536 - 7725567
Alignment:
Q  536 aactattagaatataaaatattcattgtataa 567  Q
    ||||||||||||||||||||||||||||||||    
T  7725536 aactattagaatataaaatattcattgtataa 7725567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 537 - 567
Target Start/End: Complemental strand, 2139 - 2109
Alignment:
Q  537 actattagaatataaaatattcattgtataa 567  Q
    |||||||||||||||||||||||||||||||    
T  2139 actattagaatataaaatattcattgtataa 2109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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