View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4776-Insertion-3 (Length: 860)

Name: NF4776-Insertion-3
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4776-Insertion-3
NF4776-Insertion-3
[»] chr8 (10 HSPs)
chr8 (7-860)||(10559735-10560590)
chr8 (511-641)||(10558142-10558273)
chr8 (752-860)||(10559509-10559611)
chr8 (400-462)||(6950404-6950468)
chr8 (429-463)||(38602440-38602474)
chr8 (417-463)||(43368623-43368669)
chr8 (418-463)||(4560604-4560649)
chr8 (397-463)||(9700080-9700148)
chr8 (251-288)||(39881645-39881682)
chr8 (391-461)||(39881646-39881718)
[»] chr4 (8 HSPs)
chr4 (396-461)||(18628478-18628545)
chr4 (417-463)||(1017129-1017175)
chr4 (417-461)||(18512440-18512484)
chr4 (417-463)||(19305027-19305073)
chr4 (429-463)||(27043753-27043787)
chr4 (396-459)||(33534096-33534161)
chr4 (417-463)||(55870265-55870311)
chr4 (418-463)||(24193634-24193679)
[»] chr7 (6 HSPs)
chr7 (399-471)||(529443-529517)
chr7 (420-461)||(32730173-32730214)
chr7 (420-463)||(5276594-5276637)
chr7 (396-463)||(22387819-22387888)
chr7 (391-463)||(28691759-28691832)
chr7 (426-463)||(47046031-47046068)
[»] chr2 (11 HSPs)
chr2 (391-460)||(18525167-18525234)
chr2 (417-463)||(15370246-15370292)
chr2 (417-463)||(16785283-16785329)
chr2 (391-450)||(29430831-29430892)
chr2 (391-473)||(8017507-8017591)
chr2 (416-463)||(26372650-26372697)
chr2 (417-463)||(13866979-13867025)
chr2 (417-463)||(21616583-21616629)
chr2 (417-463)||(22878199-22878245)
chr2 (400-450)||(13864717-13864769)
chr2 (426-463)||(40837360-40837397)
[»] chr1 (10 HSPs)
chr1 (391-463)||(10199331-10199405)
chr1 (417-460)||(29793624-29793667)
chr1 (396-459)||(4757416-4757481)
chr1 (395-463)||(30257760-30257831)
chr1 (400-463)||(15558295-15558358)
chr1 (429-463)||(6292605-6292639)
chr1 (415-461)||(15515655-15515701)
chr1 (396-463)||(41638231-41638300)
chr1 (401-463)||(5157155-5157219)
chr1 (395-461)||(32958714-32958782)
[»] chr5 (3 HSPs)
chr5 (417-463)||(14706207-14706253)
chr5 (417-463)||(36796630-36796676)
chr5 (391-466)||(38728475-38728552)
[»] chr3 (2 HSPs)
chr3 (391-459)||(28881686-28881755)
chr3 (430-463)||(26990148-26990181)
[»] chr6 (3 HSPs)
chr6 (417-463)||(738464-738510)
chr6 (417-463)||(8010458-8010504)
chr6 (419-460)||(13908343-13908384)


Alignment Details
Target: chr8 (Bit Score: 780; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 7 - 860
Target Start/End: Original strand, 10559735 - 10560590
Alignment:
Q  7 agttaccttataataaatcagctttccttatacacatataactctaccataactcatcttttcttatacatgtacaaatctacaaaatgtaagctctaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559735 agttaccttataataaatcagctttccttatacacatataactctaccataactcatcttttcttatacatgtacaaatctacaaaatgtaagctctaca 10559834  T
Q  107 acatgaacgactctaactcctccgagctaagtatctaacaaacacaataacttagatttatggtacagtgaacattaaatgcagtctattgtatcaatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559835 acatgaacgactctaactcctccgagctaagtatctaacaaacacaataacttagatttatggtacagtgaacattaaatgcagtctattgtatcaatat 10559934  T
Q  207 agcacgttgattgacagggatgataacatatggaataaagtgtttgattgacatatttgaacttatctattgacataaacacatgttaaacacccataga 306  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10559935 agcacgttgattgacagggatgataacatatggagtaaagtgtttgattgacttatttgaacttatctattgacataaacacatgttaaacacccataga 10560034  T
Q  307 aaaagcttacgagccataagctgcttttgtaagctacatttgtgagcttacggaaataagatgcaaacaactt---gatgtgccagtagctattttcata 403  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  10560035 aaaagcttacgagccataagctgctttcgtaagctacatttgtgagctgacggaaataagatgcaaacaacttatcgatgtgccagtagctattttcata 10560134  T
Q  404 agctctcccaaattctcacaaatgtttatgtcagtagataagctcaactaagtcaatccagtcagaccttataggtttcatgattttaatttttaataca 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10560135 agctctcccaaattctcacaaatgtttatgtcagtagataagctcaactaagtcaatccagtcagatcttataggtttcatgattttaatttttaataca 10560234  T
Q  504 aggacctaaagatatggaataaagtgtttgagaaggcagagaagttggcaggcactaaaagaggaagcatagcgccgctgttctgattgaaacacttcct 603  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10560235 aggacctaaagatatggaacaaagtgtttgagaaggcagagaagttggcaggcactaaaagaggaagcatagagccgctgttctgattgaaacacttcct 10560334  T
Q  604 gcagtgtttcaaatggatgaaattttgtatgagctcagggttataaatctgtaggtctgaaccgcaggcgttaggatttcatttcaattatgttaagact 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10560335 gcagtgtttcaaatggatgaaattttgtatgagctcagggttataaatctgtaggtctgaaccgcaggcgttaggatttcatttcaattatgttaagact 10560434  T
Q  704 ttctcggctcacacatattggttgttaccttattaaaaattgccatatttcactctgtggaacagtcaaagctttgaattatgatttggtttatacttca 803  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10560435 ttctcggctcacacatattggttgttaccttatt-aatgttgccatatttcactctgtggaacagtcaaagctttgaattatgatttggtttatacttca 10560533  T
Q  804 ttgtatttgtggttgatggatagtttattgtttt-aattatgtcctgtgttacctaag 860  Q
    || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  10560534 ttatatttgtggttgat-gatagtttattgttttaaattatgtcctgtgttacctaag 10560590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 511 - 641
Target Start/End: Original strand, 10558142 - 10558273
Alignment:
Q  511 aaagatatggaataaagtgtttgagaaggcagagaagttggcaggcactaaaagaggaagcata-gcgccgctgttctgattgaaacacttcctgcagtg 609  Q
    |||||||||||| ||||| || ||||||||||||||| || |||||| | |||||||||||||| | ||| | ||| |||||||||||||||||||||||    
T  10558142 aaagatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctgcagtg 10558241  T
Q  610 tttcaaatggatgaaattttgtatgagctcag 641  Q
    |||||||||||||||||| |||||||||||||    
T  10558242 tttcaaatggatgaaattctgtatgagctcag 10558273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 752 - 860
Target Start/End: Original strand, 10559509 - 10559611
Alignment:
Q  752 ttcactctgtggaacagtcaaagctttgaattatgatttggtttatacttcattgtatttgtggttgatggatagtttattgtt-ttaattatgtcctgt 850  Q
    ||||| ||||||||| |||||||||||||||| |||||||||| ||||||||      ||||||||||| |||||||||||||| | |||||||||||||    
T  10559509 ttcaccctgtggaactgtcaaagctttgaattttgatttggttcatacttca------ttgtggttgat-gatagtttattgttctaaattatgtcctgt 10559601  T
Q  851 gttacctaag 860  Q
    ||||||||||    
T  10559602 gttacctaag 10559611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 462
Target Start/End: Original strand, 6950404 - 6950468
Alignment:
Q  400 cataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcc 462  Q
    ||||||||||||||||   ||||||||||||||||| |||||||||| ||||| |||||||||||    
T  6950404 cataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaataagtcaatcc 6950468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 429 - 463
Target Start/End: Original strand, 38602440 - 38602474
Alignment:
Q  429 ttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||||||||||||| ||||||||||||    
T  38602440 ttatgtcagtagataagctcaaataagtcaatcca 38602474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 43368669 - 43368623
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||| |||||| |||||||||| |||| ||||||||||||    
T  43368669 tctcacaaatgcttatgttagtagataagatcaaataagtcaatcca 43368623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 4560604 - 4560649
Alignment:
Q  418 ctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||| || |||||||| ||||||||||||| ||||||||||||    
T  4560604 ctcacaagtgcttatgtcaatagataagctcaaataagtcaatcca 4560649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 463
Target Start/End: Original strand, 9700080 - 9700148
Alignment:
Q  397 tttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||| |||||||| |||||  |||||||| ||||||||  ||||||||||||||| ||||| ||||||    
T  9700080 tttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatcca 9700148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 39881645 - 39881682
Alignment:
Q  251 tgattgacatatttgaacttatctattgacataaacac 288  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  39881645 tgattgacttatttgaacttatctattggcataaacac 39881682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 39881718 - 39881646
Alignment:
Q  391 agctattttcataagctctcccaa--attctcacaaatgtttatgtcagtagataagctcaactaagtcaatc 461  Q
    ||||||||||| ||||||| ||||  | |||||||| |||||||| || |||||||| |||| ||||||||||    
T  39881718 agctattttcacaagctcttccaaacaatctcacaagtgtttatgccaatagataagttcaaataagtcaatc 39881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 18628545 - 18628478
Alignment:
Q  396 ttttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaatc 461  Q
    ||||||||||||||||||||   |||||||| ||||||||||||||||||||||||| || |||||||    
T  18628545 ttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaatc 18628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 1017129 - 1017175
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  1017129 tctcacaagtgtttatgtcagtagattagctcaaataagtcaatcca 1017175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 18512484 - 18512440
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatc 461  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||    
T  18512484 tctcacaagtgtttatgtcagtagataagctcaaataagttaatc 18512440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 19305027 - 19305073
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||| |||||||| ||||||| ||||| ||||||||||||    
T  19305027 tctcacaaatgcttatgtcaatagataatctcaaataagtcaatcca 19305073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 429 - 463
Target Start/End: Complemental strand, 27043787 - 27043753
Alignment:
Q  429 ttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||||||||||||| ||||||||||||    
T  27043787 ttatgtcagtagataagctcaaataagtcaatcca 27043753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 459
Target Start/End: Complemental strand, 33534161 - 33534096
Alignment:
Q  396 ttttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaa 459  Q
    ||||||||||||||| |||||  |||||||| |  |||||||| ||||||||||||| ||||||||    
T  33534161 ttttcataagctctctcaaatactctcacaagtacttatgtcactagataagctcaaataagtcaa 33534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 55870311 - 55870265
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||||||||||| ||||||| ||||| ||||| ||||||    
T  55870311 tctcacaaatgtttatgtcattagataaactcaaataagttaatcca 55870265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 24193634 - 24193679
Alignment:
Q  418 ctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||| |||||||| ||| |||||||||||| ||||||||||||    
T  24193634 ctcacaagtgtttatgccaggagataagctcaaataagtcaatcca 24193679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 471
Target Start/End: Original strand, 529443 - 529517
Alignment:
Q  399 tcataagctctcccaaatt--ctcacaaatgtttatgtcagtagataagctcaactaagtcaatccagtcagacc 471  Q
    ||||||| ||||||||||   ||||||| |||||||| |||||||||||||||| |||||||||||| |||||||    
T  529443 tcataagttctcccaaatagcctcacaagtgtttatgccagtagataagctcaaataagtcaatccaatcagacc 529517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 32730214 - 32730173
Alignment:
Q  420 cacaaatgtttatgtcagtagataagctcaactaagtcaatc 461  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  32730214 cacaaatgtttatgtcagtaggtaagctcaaataagtcaatc 32730173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 5276594 - 5276637
Alignment:
Q  420 cacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||    
T  5276594 cacaagtgtttatgttagtagataagctcatctaagtcaatcca 5276637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 22387888 - 22387819
Alignment:
Q  396 ttttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||||||||||||   |||||||  |||||||||||||| ||||| || | ||||||||||||    
T  22387888 ttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataagttctagtaagtcaatcca 22387819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 28691832 - 28691759
Alignment:
Q  391 agctattttcataagctctcccaa-attctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||| |||||||||| ||||| || | ||||||||||| |||||| || |||||| ||||| ||||||||||||    
T  28691832 agctgttttcataagatctccgaacagtctcacaaatgcttatgttagcagataaactcaaataagtcaatcca 28691759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 47046068 - 47046031
Alignment:
Q  426 tgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  47046068 tgtttatgtcagtagataagcacaaataagtcaatcca 47046031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 18525234 - 18525167
Alignment:
Q  391 agctattttcataagctctcccaaattctcacaaatgtttatgtcagtagataagctcaactaagtcaat 460  Q
    |||||||||||||||||||| ||||  ||||| | |||||||||| |||||||||||||| |||||||||    
T  18525234 agctattttcataagctctctcaaa--ctcacgagtgtttatgtctgtagataagctcaaataagtcaat 18525167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 15370292 - 15370246
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  15370292 tctcacaaatgcttatgccagtagataagctcaaataagtcaatcca 15370246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 16785329 - 16785283
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  16785329 tctcacaaatgcttatgacagtaaataagctcaactaagtcaatcca 16785283  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 450
Target Start/End: Original strand, 29430831 - 29430892
Alignment:
Q  391 agctattttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaa 450  Q
    ||||||||||||||| ||| ||||||  || ||||| |||||||||||||||||||||||||    
T  29430831 agctattttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagctcaa 29430892  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 8017507 - 8017591
Alignment:
Q  391 agctattttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaatccagtcagacctt 473  Q
    |||| |||||||||| ||||||||||  || ||||| || |||||||| ||||||| ||||| ||||||||||||  ||||||||    
T  8017507 agctgttttcataagttctcccaaataatcgcacaagtgcttatgtcaatagataacctcaaataagtcaatccaaacagacctt 8017591  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 26372697 - 26372650
Alignment:
Q  416 ttctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||| ||||||||| |||||||||||| | ||||||||||    
T  26372697 ttctcacaaatgcttatgtcagaagataagctcaaatgagtcaatcca 26372650  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 13866979 - 13867025
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||| |||||||| |||||||||||||||| || |||||||||    
T  13866979 tctcacaagtgtttatggcagtagataagctcaaataggtcaatcca 13867025  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 21616629 - 21616583
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||||||||||||| ||||| || || ||||||||||||    
T  21616629 tctcacaaatgtttatgtcagtggataaactgaaataagtcaatcca 21616583  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 22878199 - 22878245
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||| || |||||||||| ||||||||||| ||||||||||||    
T  22878199 tctcacaagtgcttatgtcagtggataagctcaaataagtcaatcca 22878245  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 13864717 - 13864769
Alignment:
Q  400 cataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaa 450  Q
    |||||||||| ||||||  ||| |||| |||||||||||||||||||||||||    
T  13864717 cataagctcttccaaatagtcttacaattgtttatgtcagtagataagctcaa 13864769  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 40837397 - 40837360
Alignment:
Q  426 tgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  40837397 tgtttatgtcagtagataagctcaaataagccaatcca 40837360  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 10199405 - 10199331
Alignment:
Q  391 agctattttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||| || ||||||||||  | |||||| || |||||| ||||||||||||||| ||||||||||||    
T  10199405 agctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataagtcaatcca 10199331  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 29793667 - 29793624
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaat 460  Q
    |||||||| ||||||||||||||||||||||||| |||||||||    
T  29793667 tctcacaagtgtttatgtcagtagataagctcaaataagtcaat 29793624  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 396 - 459
Target Start/End: Original strand, 4757416 - 4757481
Alignment:
Q  396 ttttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaa 459  Q
    |||||||||| ||| ||||||  |||||||| ||||||||||| ||||||||||||| ||||||||    
T  4757416 ttttcataagttctgccaaatggtctcacaagtgtttatgtcaatagataagctcaaataagtcaa 4757481  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 395 - 463
Target Start/End: Original strand, 30257760 - 30257831
Alignment:
Q  395 attttcataagctctcccaaat--tctcacaaa-tgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||| ||||||||||| ||||  ||||||||| ||||||||||||||||||| ||||| ||||| ||||||    
T  30257760 atttttataagctctcctaaatagtctcacaaaatgtttatgtcagtagataaactcaaataagtaaatcca 30257831  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 463
Target Start/End: Original strand, 15558295 - 15558358
Alignment:
Q  400 cataagctctcccaaattctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||| ||||||||| |||||||| |||||| | |||| ||||||||||| ||| ||||||||    
T  15558295 cataagttctcccaaagtctcacaagtgtttaagccagtcgataagctcaaataactcaatcca 15558358  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 429 - 463
Target Start/End: Original strand, 6292605 - 6292639
Alignment:
Q  429 ttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||||||||||||| ||||||||||||    
T  6292605 ttatgtcagtagataagctcaaataagtcaatcca 6292639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 15515655 - 15515701
Alignment:
Q  415 attctcacaaatgtttatgtcagtagataagctcaactaagtcaatc 461  Q
    |||||||||  |||||||| |||||||||||||||| ||||||||||    
T  15515655 attctcacacgtgtttatgccagtagataagctcaaataagtcaatc 15515701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 41638300 - 41638231
Alignment:
Q  396 ttttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||| ||||||||||   ||||||||||| ||||| ||||||||| |||||| |||| |||||||    
T  41638300 ttttcataatctctcccaaacagtctcacaaatgcttatgccagtagataggctcaattaagacaatcca 41638231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 463
Target Start/End: Original strand, 5157155 - 5157219
Alignment:
Q  401 ataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||||||   | |||||| |||||||||| ||||||||| |||| ||||||||||||    
T  5157155 ataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatcca 5157219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 461
Target Start/End: Original strand, 32958714 - 32958782
Alignment:
Q  395 attttcataagctctcccaaatt--ctcacaaatgtttatgtcagtagataagctcaactaagtcaatc 461  Q
    ||||| ||||||||||| ||||   ||||||| || ||||| |||||||||||||||| ||||||||||    
T  32958714 atttttataagctctccaaaataacctcacaagtgcttatgacagtagataagctcaaataagtcaatc 32958782  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 14706253 - 14706207
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  14706253 tctcacaagtgtttatgtcagtaggtaagctcaaataagtcaatcca 14706207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 36796676 - 36796630
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  36796676 tctcacaagtgtttatgtcattagataagctcaaataagtcaatcca 36796630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 38728475 - 38728552
Alignment:
Q  391 agctattttcataagctctcccaa--attctcacaaatgtttatgtcagtagataagctcaactaagtcaatccagtc 466  Q
    ||||||||||||||||||||||||  | || ||||  |||||||  || ||||||||||||| || ||||||||||||    
T  38728475 agctattttcataagctctcccaaacaatcacacaggtgtttataccaatagataagctcaaatatgtcaatccagtc 38728552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 459
Target Start/End: Complemental strand, 28881755 - 28881686
Alignment:
Q  391 agctattttcataagctctcccaaat--tctcacaaatgtttatgtcagtagataagctcaactaagtcaa 459  Q
    |||| |||||||||||||||||||||  |||||||||||  ||| ||||||||||||||||| ||| ||||    
T  28881755 agctgttttcataagctctcccaaataatctcacaaatg-ctatatcagtagataagctcaaataaatcaa 28881686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 463
Target Start/End: Complemental strand, 26990181 - 26990148
Alignment:
Q  430 tatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||||||||||||| ||||||||||||    
T  26990181 tatgtcagtagataagctcaaataagtcaatcca 26990148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 738510 - 738464
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    |||||||||||||||| ||| ||||||||||||| ||||| ||||||    
T  738510 tctcacaaatgtttatctcaatagataagctcaaataagttaatcca 738464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 8010458 - 8010504
Alignment:
Q  417 tctcacaaatgtttatgtcagtagataagctcaactaagtcaatcca 463  Q
    ||||||||||||||||| || ||||||||||||  ||||||||||||    
T  8010458 tctcacaaatgtttatgccaatagataagctcacataagtcaatcca 8010504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 460
Target Start/End: Original strand, 13908343 - 13908384
Alignment:
Q  419 tcacaaatgtttatgtcagtagataagctcaactaagtcaat 460  Q
    |||||| |||||||||||||||||||| |||| |||||||||    
T  13908343 tcacaagtgtttatgtcagtagataagttcaaataagtcaat 13908384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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