View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4776-Insertion-4 (Length: 748)
Name: NF4776-Insertion-4
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776-Insertion-4 |
 | |
|
| [»] chr3 (28 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 676; Significance: 0; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 9 - 748
Target Start/End: Complemental strand, 7751170 - 7750434
Alignment:
| Q |
9 |
atggcaggggttgttggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7751170 |
atggcaggggttgttggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcaagatttcagagactacttccatgaaaggc |
7751071 |
T |
|
| Q |
109 |
tgtcgaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttga |
208 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
7751070 |
tgtggaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtaccaacaccgaaacgtgaagaattggcttga |
7750971 |
T |
|
| Q |
209 |
tgatctcaaacatgatgtatacgaattagagcaactatacgatgtgattgctactgatgcacgatcaaagggaaagatgtgacgctatctttcacttttt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7750970 |
tgatctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactgatgcacgatcaaagggaaagatgcgacgctatctttcacttttt |
7750871 |
T |
|
| Q |
309 |
attaagcgaggatttgaagataggattgaagcattgatacagaacctagagtttcttgctgatcaaaaggatagattggcacttaacaaatttactagtg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7750870 |
attaagcgaggatttgaagataggattgaagcattgatacagaacctagagtttcttgctgatcaaaaggatagattgggacttaacaaatttactagtg |
7750771 |
T |
|
| Q |
409 |
gtgattgtgaaattggagtcttgaaattgttaagagaatttagagctgtatcgaaaagttgtaatgacatatttgttggtaaagatggtagagtcatccc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7750770 |
gtgattgtgaaattggagtcttgaaattgttaagagaatttagagctgtatcgaaaagttgtaatgacatatttgttggtaaagatggtagagtcatccc |
7750671 |
T |
|
| Q |
509 |
ccggatattaccaactgcacctttgatggataaatctgcggcgtatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttac |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7750670 |
ccggatattaccaactgcacctttgatggataaatctgcggtgtatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttac |
7750571 |
T |
|
| Q |
609 |
agtgaaacctttgtacccataatcagtatagtgggtgtgattgggatgggtaaagacaaccattgcccgacttgtttacaacaaccacaaggatacatga |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
7750570 |
agtgaaacctttgtacccataatcagtatagtgggtgtgattgggatgggt-aagacaaccattgcccgacttgtttacaacgaccacaa-gatacatga |
7750473 |
T |
|
| Q |
709 |
gcaatttgaacttaaagcttggggtctatgtttcaaaatc |
748 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
7750472 |
gcaatttgaacttaaagctt-gggtctatgtttcagaatc |
7750434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 6590310 - 6590695
Alignment:
| Q |
9 |
atggcaggggttgttggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggc |
108 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||| ||||||||||||||| || |
|
|
| T |
6590310 |
atggcaggggttattgatggggcatttctttcgtctgtctttttagtgattcgtgagaagttggcttctagagatttcagaaactacttccatgaaatgc |
6590409 |
T |
|
| Q |
109 |
tgtcgaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttga |
208 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||| || |||||||| |
|
|
| T |
6590410 |
tgcggaaaaaacttgaaatcacactggattctatcaatgaagtactggatgaagcagatgtaaaggaataccaacaccgaaacgtgcggaaatggcttga |
6590509 |
T |
|
| Q |
209 |
tgatctcaaacatgatgtatacgaattagagcaactatacgatgtgattgctactgatgcacgatcaaagggaaagatgtgacgctatctttcacttttt |
308 |
Q |
| |
|
|||| ||||||| || |||| |||||||||||||||| |||||||||||| ||| |||| | ||||||| ||||| |||||| |||||||| |||| |
|
|
| T |
6590510 |
tgatatcaaacacgaggtatttgaattagagcaactattggatgtgattgctgatgacgcacaaccaaagggcaagatacgacgctttctttcacgtttt |
6590609 |
T |
|
| Q |
309 |
attaagcgaggatttgaagataggattgaagcattgatacagaacctagagtttcttgctgatcaaaaggatagattggcacttaa |
394 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
6590610 |
attaatcgaggatttgaagctaggattaaagcattgatacagaacctagagtttcttgcagatcaaaaggataaattgggacttaa |
6590695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 29 - 392
Target Start/End: Complemental strand, 6918171 - 6917808
Alignment:
| Q |
29 |
ggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggctgtcgaaaaaacttgaaatc |
128 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||| ||||||||| |||| | ||||||||||||||||| |||| || || |||| |||||||| |
|
|
| T |
6918171 |
ggcatttctttcgtatgtgtttcaagtcattcatgagaggttgtcttcaagttatttcagagactacttcgatgatgggttggttaaaatttttgaaatc |
6918072 |
T |
|
| Q |
129 |
acactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttgatgatctcaaacatgatgtat |
228 |
Q |
| |
|
||| | ||||||||||||||||| || ||||||||||| ||||| ||| |||| ||||| ||||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
6918071 |
acattggattctatcaatgaagtgcttgatgatgcagaggtaaagcagtaccaaaaccgagacgtgaagaattggcttgatgatctcaaacacgaggtat |
6917972 |
T |
|
| Q |
229 |
acgaattagagcaactatacgatgtgattgctactgatgcacgatcaaagggaaagatgtgacgctatctttcactttttattaagcgaggatttgaaga |
328 |
Q |
| |
|
| ||| |||| ||||| ||||||||| ||||||| |||| | ||||||| | |||| || || |||||||||||||| ||| ||||||||||| | |
|
|
| T |
6917971 |
atgaagtagaccaacttctagatgtgatttctactgacgcacaaccaaagggcaggatgcaacactttctttcactttttagtaatcgaggatttgaggc |
6917872 |
T |
|
| Q |
329 |
taggattgaagcattgatacagaacctagagtttcttgctgatcaaaaggatagattggcactt |
392 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| || || |||||||||||| |||| |
|
|
| T |
6917871 |
taggattgaagcattgatacagaaggtagagtttcttgcagagaaacaggatagattgggactt |
6917808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 552 - 748
Target Start/End: Original strand, 6590757 - 6590950
Alignment:
| Q |
552 |
tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattg |
651 |
Q |
| |
|
|||||||| |||||||||| ||||||||| | | |||||||||||||||||||| ||||| | | | ||||||||||||| ||||||||||| |||||| |
|
|
| T |
6590757 |
tatggtagagagcatgagaaagaggaaataattaaatttttactttcagacagtcacagtcacaaccatgtacccataatctgtatagtgggtatgattg |
6590856 |
T |
|
| Q |
652 |
ggatgggtaaagacaaccattgcccgacttgtttacaacaaccacaaggatacatgagcaatttgaacttaaagcttggggtctatgtttcaaaatc |
748 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6590857 |
ggatgggt-aagacaacccttgcccggcttgtttacaaggaccacaa-gatactggagcaatttgaacttaaagctt-gggtctatgtttcaaaatc |
6590950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 6143377 - 6143127
Alignment:
| Q |
20 |
tgttggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggctgtcgaaaaaa |
119 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||| ||||| | |||| ||| |||| ||||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
6143377 |
tgttggtagggcatttctttcccctgtcattcaattgatttgtgagaagttaacttcaacagatttcagagactatttccatgaagggctggtgaaaaaa |
6143278 |
T |
|
| Q |
120 |
cttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttgatgatctcaaac |
219 |
Q |
| |
|
|||||||||||||| | ||||||||| | || |||||||| |||| | |||| ||| |||| | | || |||||| ||||||||||||||| | | | |
|
|
| T |
6143277 |
cttgaaatcacactcaagtctatcaattatgtgctggatgacacagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtc |
6143178 |
T |
|
| Q |
220 |
atgatgtatacgaattagagcaactatacgatgtgattgctactgatgcac |
270 |
Q |
| |
|
||| |||| ||| | |||||||||| ||||| ||||||||||| |||| |
|
|
| T |
6143177 |
atgtgttatatgaagtggagcaactattggatgttattgctactgacgcac |
6143127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 270
Target Start/End: Original strand, 13269625 - 13269813
Alignment:
| Q |
82 |
atttcagagactacttccatgaaaggctgtcgaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtccca |
181 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||||| | ||||||||| | | |||||||| ||||| | ||| ||| ||| |
|
|
| T |
13269625 |
atttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactgaagtctatcaattatttgctggatgacgcagagactaagcagtacca |
13269724 |
T |
|
| Q |
182 |
acaccgaaacgtgaaaaattggcttgatgatctcaaacatgatgtatacgaattagagcaactatacgatgtgattgctactgatgcac |
270 |
Q |
| |
|
| | | | |||| | ||||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
13269725 |
aaatcaacgcgtggagaattggcttgatgatgtcagtaatgaggtatacgaattagagcaactattggatgtgattgttactgacgcac |
13269813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 6901140 - 6900890
Alignment:
| Q |
17 |
ggttgttggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggctgtcgaaa |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||| ||||| |||||| ||| |||||| | || |||| |
|
|
| T |
6901140 |
ggttgttggtgggacatttctttcgtctgtctttcgagtgatttttgagaggttagcttcaacagattgcagagattacgtccatgtagatgtggagaaa |
6901041 |
T |
|
| Q |
117 |
aaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttgatgatctca |
216 |
Q |
| |
|
||||||||||||||||| | |||||||||| |||| |||||||| ||| | |||| ||| || || ||||||| ||||||||| ||||||||| |
|
|
| T |
6901040 |
aaacttgaaatcacactggtttctatcaataaagtgctggatgacgcaaaggcaaagcagtaccgtaacaagaacgtgaggaattggcttaatgatctca |
6900941 |
T |
|
| Q |
217 |
aacatgatgtatacgaattagagcaactatacgatgtgattgctactgatg |
267 |
Q |
| |
|
||| ||| ||| | ||| ||||| || ||| ||| ||||||||||||||| |
|
|
| T |
6900940 |
aacttgaggtagaggaagtagagaaaatattggatatgattgctactgatg |
6900890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 552 - 731
Target Start/End: Complemental strand, 6266319 - 6266142
Alignment:
| Q |
552 |
tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattg |
651 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||| |||||||||||||| ||| || |||| | | ||||||||||||||||||||||| ||| | |
|
|
| T |
6266319 |
tatggtagagagcatgagcaagaggaaatgattgattttttactttcagatagtcacggtgagaaccagctacccataatcagtatagtgggtctgacgg |
6266220 |
T |
|
| Q |
652 |
ggatgggtaaagacaaccattgcccgacttgtttacaacaaccacaaggatacatgagcaatttgaacttaaagcttggg |
731 |
Q |
| |
|
|||| ||| |||||| || |||||| ||||||||||| |||| |||||||| ||||| |||||| |||||||||||| |
|
|
| T |
6266219 |
ggattggt-aagacagcccttgcccagcttgtttacaatgacca-taggatacaggagcagtttgaatttaaagcttggg |
6266142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 6246368 - 6246140
Alignment:
| Q |
18 |
gttgttggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggctgtcgaaaa |
117 |
Q |
| |
|
|||||| || ||||||||||||| | ||| ||||| ||||| | ||||| || ||||| ||||||||| |||||| ||||||||| ||| ||||| |
|
|
| T |
6246368 |
gttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgactacctccatgaaaagcttgtgaaaa |
6246269 |
T |
|
| Q |
118 |
aacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttgatgatctcaa |
217 |
Q |
| |
|
|||||||||||||| | | |||||||||| |||| |||||||| ||||| | |||| ||| | | | | ||||||||| |||||| |||||||| | |
|
|
| T |
6246268 |
aacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgag |
6246169 |
T |
|
| Q |
218 |
acatgatgtatacgaattagagcaactat |
246 |
Q |
| |
|
|||| |||||||||||||| ||||||| |
|
|
| T |
6246168 |
taatgaggtatacgaattagatcaactat |
6246140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 624 - 748
Target Start/End: Original strand, 6721564 - 6721685
Alignment:
| Q |
624 |
cccataatcagtatagtgggtgtgattgggatgggtaaagacaaccattgcccgacttgtttacaacaaccacaaggatacatgagcaatttgaacttaa |
723 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| ||||||||| |||||| ||||||||||| ||||| |||||| ||||||| ||||||||| |
|
|
| T |
6721564 |
cccataatcagtatagtgggtctgattgggataggt-aagacaacccttgcccagcttgtttacaatgaccac-aggatagtggagcaatatgaacttaa |
6721661 |
T |
|
| Q |
724 |
agcttggggtctatgtttcaaaatc |
748 |
Q |
| |
|
||||| |||||||| ||||| |||| |
|
|
| T |
6721662 |
agctt-gggtctatctttcagaatc |
6721685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 285
Target Start/End: Original strand, 8567924 - 8568182
Alignment:
| Q |
27 |
ggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggctgtcgaaaaaacttgaaa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| || ||| | | || || || | || ||||||||| |
|
|
| T |
8567924 |
ggggcatttctttcgtctgtctttcaagtgactattcagaggttggcttcaagagatttcagaggctgctttcgtaaagggttggtggaagaacttgaaa |
8568023 |
T |
|
| Q |
127 |
tcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttgatgatctcaaacatgatgt |
226 |
Q |
| |
|
||||||| ||||||| ||| || | ||||||||||||| | |||| ||| |||| || | | ||||| || |||||| || | || |||||||| || |
|
|
| T |
8568024 |
tcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatgaggt |
8568123 |
T |
|
| Q |
227 |
atacgaattagagcaactatacgatgtgattgctactgatgcacgatcaaagggaaaga |
285 |
Q |
| |
|
||| ||| | |||||||||| ||| | |||||||| |||||| | ||||||||||| |
|
|
| T |
8568124 |
atatgaagttgagcaactattggatattattgctaccaatgcacaaagaaagggaaaga |
8568182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 6721101 - 6721166
Alignment:
| Q |
200 |
ttggcttgatgatctcaaacatgatgtatacgaattagagcaactatacgatgtgattgctactga |
265 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
6721101 |
ttggcttgataatctcaaacatgaggtatacgaagtagagcaactattggatgtgattgctactga |
6721166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 553 - 661
Target Start/End: Complemental strand, 6883131 - 6883023
Alignment:
| Q |
553 |
atggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattgg |
652 |
Q |
| |
|
||||||| |||||||||| ||||||| | | | ||||||||||||| |||| | ||||||| | | ||| ||||||||| |||||||||||| |||| || |
|
|
| T |
6883131 |
atggtagagagcatgagaaagaggaattaattaaatttttactttctgacattcacagtgacaaccttgcacccataattagtatagtgggtctgatggg |
6883032 |
T |
|
| Q |
653 |
gatgggtaa |
661 |
Q |
| |
|
||||||||| |
|
|
| T |
6883031 |
gatgggtaa |
6883023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 621 - 740
Target Start/End: Original strand, 13270086 - 13270202
Alignment:
| Q |
621 |
gtacccataatcagtatagtgggtgtgattgggatgggtaaagacaaccattgcccgacttgtttacaacaaccacaaggatacatgagcaatttgaact |
720 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| |||||| || |||| | ||||||||||| |||| |||||||| ||||| |||||| | |
|
|
| T |
13270086 |
gtacccataatcagtatagtgggtctgatggggatgggt-aagacagcccttgctcagcttgtttacaatgacca-taggatacaggagcagtttgaatt |
13270183 |
T |
|
| Q |
721 |
taaagcttggggtctatgtt |
740 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
13270184 |
taaagctt-gggtctatgtt |
13270202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 586 - 731
Target Start/End: Complemental strand, 6259748 - 6259605
Alignment:
| Q |
586 |
aatttttactttcagacagttacagt-gaaacctttgtacccataatcagtatagtgggtgtgattgggatgggtaaagacaaccattgcccgacttgtt |
684 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||| ||||||||| |||||| || |||||| |||||| |
|
|
| T |
6259748 |
aatttttactttcagacagttacaaccgaaaccag-gtatccataatcagtatagtgggtctgacggggatgggt-aagacagcccttgcccagcttgtt |
6259651 |
T |
|
| Q |
685 |
tacaacaaccacaaggatacatgagcaatttgaacttaaagcttggg |
731 |
Q |
| |
|
||||| |||| |||||||| ||||| |||||| |||||||||||| |
|
|
| T |
6259650 |
tacaatgacca-taggatacaggagcagtttgaatttaaagcttggg |
6259605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 6238727 - 6238585
Alignment:
| Q |
18 |
gttgttggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggctgtcgaaaa |
117 |
Q |
| |
|
||||||||| |||||||||||| || || ||||| ||||| |||||||| ||||| |||||||||||||||||| |||| |||| ||||| |
|
|
| T |
6238727 |
gttgttggtcaggcatttctttcccctatcattcaattgatttatgagaggttagcttcaacagatttcagagactacttgaatgatgggctagtgaaaa |
6238628 |
T |
|
| Q |
118 |
aacttgaaatcacactagattctatcaatgaagtactggatga |
160 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||| |||||||| |
|
|
| T |
6238627 |
aacttgaaatcacactgaagtctatcaataaagtgctggatga |
6238585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 6883577 - 6883527
Alignment:
| Q |
26 |
tggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttc |
76 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
6883577 |
tggggcatttctttcgtctgcctttcaagtgattcgtgagaggttagcttc |
6883527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 687
Target Start/End: Complemental strand, 6900647 - 6900582
Alignment:
| Q |
621 |
gtacccataatcagtatagtgggtgtgattgggatgggtaaagacaaccattgcccgacttgtttac |
687 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||| ||||||||| |
|
|
| T |
6900647 |
gtacccataatcagtgtagtgggtgtgattgggatgggt-aagacaaccctcgcccagcttgtttac |
6900582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 552 - 689
Target Start/End: Complemental strand, 6245915 - 6245779
Alignment:
| Q |
552 |
tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattg |
651 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| | |||||||||||||||||||||| || || | | | ||| |||||||||||||||||||| || | |
|
|
| T |
6245915 |
tatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtatagtgggtctggacg |
6245816 |
T |
|
| Q |
652 |
ggatgggtaaagacaaccattgcccgacttgtttacaa |
689 |
Q |
| |
|
|||| ||| ||||||||| |||| | ||||||||||| |
|
|
| T |
6245815 |
ggataggt-aagacaacccttgcgcagcttgtttacaa |
6245779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 552 - 613
Target Start/End: Complemental strand, 6917732 - 6917671
Alignment:
| Q |
552 |
tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtga |
613 |
Q |
| |
|
|||||||| |||||||||| ||||||||| | |||||||||||| ||||||||| ||||||| |
|
|
| T |
6917732 |
tatggtagagagcatgagaaagaggaaataattgaatttttactatcagacagtgacagtga |
6917671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 6169969 - 6169722
Alignment:
| Q |
18 |
gttgttggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcgagatttcagagactacttccatgaaaggc-tgtcgaaa |
116 |
Q |
| |
|
|||||| || ||||||||||||| | ||| ||||| ||||| | ||||| || ||||| |||||| || |||||||||||||||| || ||| |||| |
|
|
| T |
6169969 |
gttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttgagtgactacttccatgaaaagcatgt-gaaa |
6169871 |
T |
|
| Q |
117 |
aaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttgatgatctca |
216 |
Q |
| |
|
||||||||||||||| | | ||| |||||| |||| || ||||| ||||| | |||| ||| | || | | | |||| || |||||| |||||||| ||| |
|
|
| T |
6169870 |
aaacttgaaatcacattggtttcaatcaataaagtgcttgatgacgcagagacaaagcagtacgaaaatctagacgtaaagaattgggttgatgatatca |
6169771 |
T |
|
| Q |
217 |
aacatgatgtatacgaattagagcaactatacgatgtgattgctactga |
265 |
Q |
| |
|
|| | |||||||| |||||||||| | ||||| ||||||||||| |
|
|
| T |
6169770 |
ggaataagatatacgaagtagagcaactgttggatgtcattgctactga |
6169722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 6266689 - 6266557
Alignment:
| Q |
80 |
agatttcagagactacttccatgaaaggctgtcgaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcc |
179 |
Q |
| |
|
||||||| ||| |||| ||| |||| |||| ||||||||||||||||||||| | |||||||||| |||| |||||||| ||||| | |||| ||| | |
|
|
| T |
6266689 |
agatttcggaggctacgtccgtgaagagctggggaaaaaacttgaaatcacactggtttctatcaatcaagtgctggatgacgcagagacaaagaagtac |
6266590 |
T |
|
| Q |
180 |
caacaccgaaacgtgaaaaattggcttgatgat |
212 |
Q |
| |
|
| | | ||||||||| |||||| |||||||| |
|
|
| T |
6266589 |
gagaatcaaaacgtgaagaattgggttgatgat |
6266557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 263
Target Start/End: Original strand, 6849828 - 6849991
Alignment:
| Q |
100 |
atgaaaggctgtcgaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaa |
199 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||| | |||| ||| ||| || |||| ||| | |
|
|
| T |
6849828 |
atgaagggctgctgaaaaaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaagcagtgtcaaagcccaaacatgaggac |
6849927 |
T |
|
| Q |
200 |
ttggcttgatgatctcaaacatgatgtatacgaattagagcaactatacgatgtgattgctact |
263 |
Q |
| |
|
|||||||||| | || |||||| ||||||||| | |||||||||| |||||||| |||||| |
|
|
| T |
6849928 |
ttggcttgatcactccatacatgaggtatacgaagttgagcaactattggatgtgatggctact |
6849991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 674
Target Start/End: Complemental strand, 6169519 - 6169398
Alignment:
| Q |
552 |
tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgattg |
651 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| | ||| |||||||||||| ||||| || |||| | | ||||||||||||||||| |||||| ||| | |
|
|
| T |
6169519 |
tatggtagagagcatgagaaagaagaaataattgattttttactttcatacagtcacggtgacaaccgggtacccataatcagtatcgtgggtctgaacg |
6169420 |
T |
|
| Q |
652 |
ggatgggtaaagacaaccattgc |
674 |
Q |
| |
|
|||| ||| ||||||||| |||| |
|
|
| T |
6169419 |
ggataggt-aagacaacccttgc |
6169398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 6883402 - 6883345
Alignment:
| Q |
213 |
ctcaaacatgatgtatacgaattagagcaactatacgatgtgattgctactgatgcac |
270 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| ||||||||||| ||||| |||| |
|
|
| T |
6883402 |
ctcaaacattatgtatacgaattagatcaactattggatgtgattgcgactgacgcac |
6883345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 269
Target Start/End: Complemental strand, 8455640 - 8455501
Alignment:
| Q |
130 |
cactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttgatgatctcaaacatgatgtata |
229 |
Q |
| |
|
|||| ||||||||||| ||||||| || || ||||| |||||| ||| |||| || | | ||||| || |||||||||||||| ||||||| ||| || |
|
|
| T |
8455640 |
cacttgattctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgttta |
8455541 |
T |
|
| Q |
230 |
cgaattagagcaactatacgatgtgattgctactgatgca |
269 |
Q |
| |
|
||| ||| ||||||| |||| |||| ||||||||||| |
|
|
| T |
8455540 |
tgaagcagaccaactattagatgagatttctactgatgca |
8455501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 731
Target Start/End: Complemental strand, 6142842 - 6142734
Alignment:
| Q |
621 |
gtacccataatcagtatagtgggtgtgattgggatgggtaaagacaaccattgcccgacttgtttacaacaaccacaaggatacatgagcaatttgaact |
720 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||| ||||| ||||||| |||| | || ||||||| |||||| ||||||| |||||||||||||| |
|
|
| T |
6142842 |
gtacccataatcagtatagtaggtcttcctgggataggtaa-gacaacccttgcgcagtttatttacaatgaccaca-ggatacaggagcaatttgaact |
6142745 |
T |
|
| Q |
721 |
taaagcttggg |
731 |
Q |
| |
|
||| ||||||| |
|
|
| T |
6142744 |
taatgcttggg |
6142734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 748
Target Start/End: Original strand, 8568475 - 8568570
Alignment:
| Q |
650 |
tgggatgggtaaagacaaccattgcccgacttgtttacaacaaccacaaggatacatgagcaatttgaacttaaagcttggggtctatgtttcaaaatc |
748 |
Q |
| |
|
|||||||||||| ||| ||| |||| |||||||| ||||| |||||||| ||| | ||||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
8568475 |
tgggatgggtaa-gaccacccttgctcgacttgtctacaatgaccacaag-atagagaagcaatttgaacttaaagctt-gggtccatgtttcagaatc |
8568570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 263
Target Start/End: Original strand, 12936 - 13099
Alignment:
| Q |
100 |
atgaaaggctgtcgaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaa |
199 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||| | |||| ||| ||| || |||| ||| || |
|
|
| T |
12936 |
atgaagggctgctgaaaaaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaagcagtgtcaaagcccaaacatgaggaa |
13035 |
T |
|
| Q |
200 |
ttggcttgatgatctcaaacatgatgtatacgaattagagcaactatacgatgtgattgctact |
263 |
Q |
| |
|
|||||||||| | || |||||| ||||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
13036 |
ttggcttgatcactccatacatgaggtatacgaagtagagcaactattggatgtgatggctact |
13099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 731
Target Start/End: Original strand, 35139890 - 35139994
Alignment:
| Q |
625 |
ccataatcagtatagtgggtgtgattgggatgggtaaagacaaccattgcccgacttgtttacaacaaccacaaggatacatgagcaatttgaacttaaa |
724 |
Q |
| |
|
||||||||||||| |||||| |||| |||| |||||| ||||||| | ||| |||||||||||| |||| | ||||||||||||| |||||| ||||| |
|
|
| T |
35139890 |
ccataatcagtattgtgggtctgatggggaagggtaa-gacaaccctaacccaacttgtttacaatgaccata-ggatacatgagcagtttgaatttaaa |
35139987 |
T |
|
| Q |
725 |
gcttggg |
731 |
Q |
| |
|
||||||| |
|
|
| T |
35139988 |
gcttggg |
35139994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 6572356 - 6572479
Alignment:
| Q |
115 |
aaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtcccaacaccgaaacgtgaaaaattggcttgatgatct |
214 |
Q |
| |
|
||||||||||||||||| | ||||||||||| || | ||||||||||||| | ||| ||| |||| ||| ||||||||| | |||||||||| ||| |
|
|
| T |
6572356 |
aaaaacttgaaatcacaatgaattctatcaatcaattgttggatgatgcagagacaaaacagtaccaaaacccaaacgtgaagatttggcttgatcgtct |
6572455 |
T |
|
| Q |
215 |
caaacatgatgtatacgaattaga |
238 |
Q |
| |
|
|||||||| ||||| ||| |||| |
|
|
| T |
6572456 |
aaaacatgaggtatatgaagtaga |
6572479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University