View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4776-Insertion-5 (Length: 698)
Name: NF4776-Insertion-5
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 255 - 691
Target Start/End: Original strand, 39825021 - 39825449
Alignment:
| Q |
255 |
gttgataccctggttttaaattgtggttgcagttatgctataaccttgaggtcgacggagtgaacctttatattacaacgaaatgagaccgatgcagtga |
354 |
Q |
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| T |
39825021 |
gttgataccctggttttaaattgcggttgtagatatgctatgaccttgaggccgacggagtgaacctttatattacaacgaaatgagaccgatgcagtga |
39825120 |
T |
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| Q |
355 |
aaattgcgggtgagattactttgcagagacgtcaaagtcctttatattgaggtagcggaccatagataattnnnnnnnnnnnnnnnccatagtatatggt |
454 |
Q |
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| T |
39825121 |
aaattgcgggtgagattactttgcagagacgtcaaaatcctttatattgcggtagcggaccatagataattaaaaataaa------ccatagtatatggt |
39825214 |
T |
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| Q |
455 |
agtagataccttagtcattgggaagagatccaatttttggagtagagtttatgtgaaaaattctgcacatgaatcaaaggaagaaagaaaaa-ggacgtt |
553 |
Q |
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| T |
39825215 |
agtagataccttagtcattgggaagagatccaatttttggagtagagtttatgtgaaaaattctgcacatgaatcaaaggaagaaagaaaaagggacgtt |
39825314 |
T |
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| Q |
554 |
tcaggtttataagtgggggataataatattcttgtttcttgctaaaagagactcatcatgaataaactcatatcccgnnnnnnncatatttgaagtcaaa |
653 |
Q |
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| T |
39825315 |
tcaggtttataagt-ggggataataatattcttgtttcttgctaaaagagactgatcatgaataaactcatatcccg-aaaaaacatatttgaagtcaaa |
39825412 |
T |
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| Q |
654 |
ttaagtaaaagagaccgttccttaaaaaaggtaacagg |
691 |
Q |
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| T |
39825413 |
ttaagtaaaagagaccgtt-cttaaaaaaggtaacagg |
39825449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 39824775 - 39824994
Alignment:
| Q |
7 |
agttaaagctttggatgttgggaaccatggtttagtaggcttatctggcggtacttgattgtttttgttcatggaagaagaagggtttgaaaaagttgtt |
106 |
Q |
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| T |
39824775 |
agttaaagctttggatgttgggaaccatggtttagtaggcttatctggcggtacttgattgtttttgttcatggaagaagaagggtttgaaaaagttgtt |
39824874 |
T |
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| Q |
107 |
gttgtttggtgcaaataaggtagtgaatgtgtgaattgcgtcatagagagattgagaaactagagaagaaattaacaacctagatggtggaaacttgaaa |
206 |
Q |
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| T |
39824875 |
gttgtttggtgcaaataaggtagtgaatgtgtgaattgcgtcatagagagattgagaaactacagaagaaattaacaacctagatggtggaaacttgaaa |
39824974 |
T |
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| Q |
207 |
agagatttgattaatgagag |
226 |
Q |
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| T |
39824975 |
agagatttgattaatgagag |
39824994 |
T |
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