View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4776-Insertion-8 (Length: 596)
Name: NF4776-Insertion-8
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Complemental strand, 52333335 - 52332761
Alignment:
| Q |
8 |
agggaaaccttcattaaattctcaatgataagtctgctgttcactgcaacaaggactactatacagaggttgaagaggccagcatgactctgcaactgat |
107 |
Q |
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| T |
52333335 |
agggaaaccttcattaaattctcaatgataagtctgctgttcactgcaacaaggactactatacagaggttgaagaggccagcatgactctgcaactgat |
52333236 |
T |
|
| Q |
108 |
tcaataattagtaaagaaatacagttacctgatcagaacgcatgttcatttataacaacaaaactgaagcagaaaacacacaactctgccattctattca |
207 |
Q |
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| T |
52333235 |
tcaataattagtaaagaaatacagttacctgatcagaacccatgttcatttataacaacaaaactgaagcagaaaacacacaactctgccattctattca |
52333136 |
T |
|
| Q |
208 |
attcaaagcattaattgatactggagtaacaattagtaccgtctagtacactgtacatacacttcatatttttctaatgttttccttttcacattaatga |
307 |
Q |
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| T |
52333135 |
attcaaagcattaattgatactggagtaacaattagtaccgtctagtacactgtacatacacttcatatttttctaatgttctccttttcacattaatga |
52333036 |
T |
|
| Q |
308 |
agaacaaacatgcactttttgcatgttcggtattatagtaactttgccagaatcgcaatgagccactgtgattttggaaaagcttgcaagctatgaagta |
407 |
Q |
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| T |
52333035 |
agaacgaacatgcactttttacatgttcggtattatagtaactttgccagaatcgcaatgagccactgtgattttggaaaagcttgcaagctatgaagta |
52332936 |
T |
|
| Q |
408 |
taactttctataaaatc-caatgggtcattgtgattatgacaatctgacaacctaacctatcctatcgtgataacaaacttgcactctctagcttcagta |
506 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52332935 |
taactttctataaaatcgcaatgggtcattgtgattatcacaatccgacaacctaacctatcctatcgtgataacaaacatgcactctctagcttcagta |
52332836 |
T |
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| Q |
507 |
aaatcatgtggttcaatgtgattttggtgaaactgccaaacatatactgattttgctctatttattcaaaccaac |
581 |
Q |
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| T |
52332835 |
aaatcatgtggttcaatgtgattttggtgaaactgccaaacatatactgattttgctctatttattcaaaccaac |
52332761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 17521867 - 17521954
Alignment:
| Q |
12 |
aaaccttcattaaattctcaatgataagtctgctgttcactgcaacaaggactactatacagaggttgaagaggccagcatgactctg |
99 |
Q |
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|||||||||| | ||| ||||| ||||| || || |||||||||||||| || || |||||||| ||||| || || ||||||||||| |
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| T |
17521867 |
aaaccttcatcagattttcaataataagcctactattcactgcaacaagcaccacaatacagagattgaacagtcctgcatgactctg |
17521954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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