View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4776-Insertion-9 (Length: 454)
Name: NF4776-Insertion-9
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 434
Target Start/End: Complemental strand, 55735856 - 55735431
Alignment:
| Q |
6 |
caagaagaacatagaaattgttgaggcgtgaaaaaggatttgaggttgaaaggattgctttgtgttctatggagtggtagaagtggggccttcaggttga |
105 |
Q |
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| T |
55735856 |
caagaagaacatagaaattgttgagg-gtgaaaaaggatttgaggttgaaaggattgctttgtgttctatggagtggtagaagtggggccttcaggttga |
55735758 |
T |
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| Q |
106 |
ggttattgttggattcatcggaaactgatgtttcactatgttctcctgtcattttgaatagaaaaaggaattggctaaggtattctggcagttgcagaga |
205 |
Q |
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| T |
55735757 |
ggttattgttggattcatcggaaactgatgtttcactatgttctcctgtcattttgaatagaaaaaggaattggctaaggtat--ttgcagttgcagaga |
55735660 |
T |
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| Q |
206 |
agaggaatgattggtaaggttgagtgttggccttttatttctcatttttcatgtgcaagggccaggggaaggagtggccaaatttgcttcccaattannn |
305 |
Q |
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| T |
55735659 |
agaggaatgattgttaaggttgagtgttggccttttatttctcatttttcatgtgcaagggccaggggaaggagtggccaaatttgcttcccaattattt |
55735560 |
T |
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| Q |
306 |
nnnnnnnnnnctacaatatttgagtttgaccaaagtaaatatttttctcatgacttaaatttgatcgaagtaaatattttttcaaagcgactaagatttt |
405 |
Q |
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| T |
55735559 |
ttatttttttctacaatatttgagtttgaccaaagtaaatattttcctcatgacttaaatttgatcgaagtaaatattttttcaaagcgactaagatttt |
55735460 |
T |
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| Q |
406 |
gtttgcagtttgaagaagtgagaggatgg |
434 |
Q |
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| T |
55735459 |
gtttgcagtttgaagaagtgagaggatgg |
55735431 |
T |
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