View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4776_high_1 (Length: 419)
Name: NF4776_high_1
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 34572433 - 34572041
Alignment:
| Q |
19 |
ccccttgtagttttgaagaaggcattgcactaatgctgtcaagagataaccaaccagaaagtcctgaaaatttacagggtggtattttagtagataagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34572433 |
ccccttgtagttttgaagaaggcattgcactaatgcagtcaagagataaccaaccagaaagtcctgaaaatttgcagggtggtattttagtagataagat |
34572334 |
T |
|
| Q |
119 |
ttatgaagtatctccatacaatcttaatgtagttcttttcgcgccggattcacagtttaggaaagatttagcagaacatcaagggacaacaaatttgcaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34572333 |
ttatgaagtatctccatacaatcttaatgtagttcttttcgtgccggattcacagtttaggaaagatttagcagaacaacaagggacaacaaatttgcaa |
34572234 |
T |
|
| Q |
219 |
gaaggggcttggtcctggaaagatgaagatatgtcttgtttgactcgagtcgtcaactatacaaaagctgcttcaaaattggttaaagctctcaatacca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572233 |
gaaggggcttggtcctggaaagatgaagatatgtcttgtttgactcgagtcgtcaactatacaaaagctgcttcaaaattggttaaagctctcaatacca |
34572134 |
T |
|
| Q |
319 |
ccgaggaacaaacctatattagagcgactaaagatgaatttgatgtacttgttagtgtatgcacccctgaggttccttatgggaattcatttc |
411 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572133 |
ctgaggaacaaacctatattagagcgactaaagatgaatttgatgtacttgttagtgtatgcacccctgaggttccttatgggaattcatttc |
34572041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University