View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4776_low_3 (Length: 259)
Name: NF4776_low_3
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 41637941 - 41637755
Alignment:
| Q |
18 |
attatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttataaacgtgacatgttnnnnnnnnnggttt |
117 |
Q |
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| T |
41637941 |
attatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttataaacgtgacatgttcaaaaaaaaagttt |
41637842 |
T |
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| Q |
118 |
tataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgac |
204 |
Q |
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| T |
41637841 |
tataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgac |
41637755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 41638631 - 41638751
Alignment:
| Q |
114 |
gttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgacggcaagaga |
213 |
Q |
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| T |
41638631 |
gttttataaacgtgatatatacaagaggtaccggtcagagcaggtagaagttgaaggagctacggatgacggtac--caatccaaaatgacggcaagaga |
41638728 |
T |
|
| Q |
214 |
ggacacgaagcaaaagctacagg |
236 |
Q |
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| T |
41638729 |
gggcacgaagcaaaagctacagg |
41638751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 41638166 - 41638221
Alignment:
| Q |
21 |
atcactgtagctactttgtttggtgccattatttcacttattttagtggctagaac |
76 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41638166 |
atcactctggctactttgtttggtgccattatttcacttattttagtggccagaac |
41638221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 39628160 - 39628083
Alignment:
| Q |
20 |
tatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttataaacgtga |
97 |
Q |
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|||||||| ||||| |||||||||| |||||||||| | ||||| || |||||||||||||||||||||||||||| |
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| T |
39628160 |
tatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaagttttataaacgtga |
39628083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 39628097 - 39628061
Alignment:
| Q |
114 |
gttttataaacgtgatatatacaagaggtaccgatca |
150 |
Q |
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| T |
39628097 |
gttttataaacgtgatatatacaagaggtaccgatca |
39628061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 50408181 - 50408283
Alignment:
| Q |
114 |
gttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgacggcaagaga |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
50408181 |
gttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgacggcaagaga |
50408280 |
T |
|
| Q |
214 |
gga |
216 |
Q |
| |
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||| |
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| T |
50408281 |
gga |
50408283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 50408116 - 50408195
Alignment:
| Q |
18 |
attatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttataaacgtga |
97 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |
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| T |
50408116 |
attatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaaataagttttataaaggtga |
50408195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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