View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4776_low_4 (Length: 238)
Name: NF4776_low_4
Description: NF4776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4776_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 47871722 - 47871931
Alignment:
| Q |
12 |
atcacagagtaccacgatcatagctgggactatggggtatatagctcctgaatatttcacaacagggaaagctacaaaggaatctgatatatacagtttt |
111 |
Q |
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| T |
47871722 |
atcacaaagtaccacgatcatagctgggactatggggtatatagctcctgaatatttcacaacagggaaagctacaaaggaatctgatatatacagtttt |
47871821 |
T |
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| Q |
112 |
ggtattgtttcattggaattagcaagtggaagaaaaccaattgatcgtaaggccaaggagggtcaagtggctatatttgatcgggtctgggacctttata |
211 |
Q |
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| T |
47871822 |
ggtattgtttcattggaattagcaagtggaagaaaaccaattgatcgtaaggccaaggagggtcaagtggctatatttgatcgggtctgggacctttata |
47871921 |
T |
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| Q |
212 |
gacttggaag |
221 |
Q |
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|||||||||| |
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| T |
47871922 |
gacttggaag |
47871931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 47873810 - 47873619
Alignment:
| Q |
22 |
accacgatcatagctgggactatggggtatatagctcctgaatatttcacaacagggaaagctacaaaggaatctgatatatacagttttggtattgttt |
121 |
Q |
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||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
47873810 |
accacaatcatagctgggaccatggggtacatagctcctgaatatatcacaacagggaaggctacaaaggaatcagatatatacagctttggcattgttt |
47873711 |
T |
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| Q |
122 |
cattggaattagcaagtggaagaaaaccaattgatcgtaaggccaaggagggtcaagtggctatatttgatcgggtctgggacctttataga |
213 |
Q |
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| T |
47873710 |
cattggaattagcaagtggaagaaaaccagttgatcttaatgccaaggaggatcaaatggctatatttgattgggtttgggagctttataga |
47873619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 5821083 - 5821269
Alignment:
| Q |
34 |
gctgggactatggggtatatagctcctgaatatttcacaacagggaaagctacaaaggaatctgatatatacag--ttttggtattgtttcattggaatt |
131 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |||| | ||||||| ||| |||| |
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| T |
5821083 |
gctgggactatgtggtatatagctcctgaac--ttcacaacaaggaaagctacaaaggaatatgatatatacagtttttttgaattgttttattaaaatt |
5821180 |
T |
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| Q |
132 |
agcaagtggaagaaaaccaattgatcgtaaggccaaggagggtcaagtggctatatttgatcgggtctgggacctttatagacttggaa |
220 |
Q |
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| T |
5821181 |
ggtaagtggaaggaaaccaactgatcgtaaggccaaagataatcaagtagctatatttgattgtgtttgggacttgtatagactaggaa |
5821269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 36931458 - 36931579
Alignment:
| Q |
22 |
accacgatcatagctgggactatggggtatatagctcctgaatatttcacaacagggaaagctacaaaggaatctgatatatacagttttggtattgttt |
121 |
Q |
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||||| || ||||||||||| | ||| ||||| || ||||||||||||||| |||| || |||| |||||||||||||||| ||| ||||| | || | |
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| T |
36931458 |
accacaattatagctgggacaaggggttatattgcacctgaatatttcacatcaggaaagcctaccaaggaatctgatatattcagctttggagtagtgt |
36931557 |
T |
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| Q |
122 |
cattggaattagcaagtggaag |
143 |
Q |
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||||||| |||| |||||||| |
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| T |
36931558 |
tattggaaatagccagtggaag |
36931579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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