View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777-Insertion-11 (Length: 404)
Name: NF4777-Insertion-11
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 37776177 - 37775844
Alignment:
| Q |
8 |
tgtacttctttattaggacttgaaacatccactagactgatgctcatat--------------------tttcctttaaggggaacaagtgcagccacgg |
87 |
Q |
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| T |
37776177 |
tgtacttctttattaggacttgaaacatctactagactgatgctcatattttcgtatataatgcataactttcctttaaggggaacaagtgcagccacgg |
37776078 |
T |
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| Q |
88 |
gtgaggtatgcaaatcaagtagtttgctatccataaacattctccatgaatccgtttctctgtcgtatacagtgagcttcaatctgtcccgagaatcaag |
187 |
Q |
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| T |
37776077 |
gtgaggtatgcaaatcaagtagtttgctatccataaacattctccatgaatccgtttctctg--------------------tctgtcccgagaatcaag |
37775998 |
T |
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| Q |
188 |
tgcatatagttgcctattcagtgaaatacaaagcttattactcaaacccgttaccattccatcagtaacagggctccaagtatttgtttccggagaatat |
287 |
Q |
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| T |
37775997 |
tgcatatagttgcctattcagtgaaatacaaagcttattactcaaacccgttaccattccatcagtaacagggcttcaagtatttgtttctggagaatat |
37775898 |
T |
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| Q |
288 |
gcttcacatacgatattgtaattggacccaagtccattcaaaaaccatgttcca |
341 |
Q |
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| T |
37775897 |
gcttcacatacgatattgtaattggacccaagtccattcaaaaaccatgttcca |
37775844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 37783164 - 37783069
Alignment:
| Q |
184 |
caagtgcatatagttgcctattcagtgaaatacaaagcttattactcaaacccgttaccattccatcagtaacagggctccaagtatttgtttccg |
279 |
Q |
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| T |
37783164 |
caagtgcatagagatgtccattcagtgaaatataaagcttatcacgccaaccatttaccattccactactaaccgggctctatgtatttgtttccg |
37783069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 37779973 - 37779929
Alignment:
| Q |
10 |
tacttctttattaggacttgaaacatccactagactgatgctcat |
54 |
Q |
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||||| ||||||||||||||||||||| |||| ||| |||||||| |
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| T |
37779973 |
tacttgtttattaggacttgaaacatcgactaaacttatgctcat |
37779929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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