View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777-Insertion-12 (Length: 156)
Name: NF4777-Insertion-12
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777-Insertion-12 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 1e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 1e-79
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 17192272 - 17192421
Alignment:
| Q |
7 |
aagtcttgcctctttgtggtggaaagatttgacaatgttagaggataggagtgggttgagttggttcaaatcggaggtggttagaaagatgagagaaagt |
106 |
Q |
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| T |
17192272 |
aagtcttgcctctttgtggtggaaagatttgacaatgttagaggataggagtgggttgagttggttcaaatcggaggtggttagaaagatgagagaaagt |
17192371 |
T |
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| Q |
107 |
atgagtactttttggaaggatagatggagatccgatatccccttttgtga |
156 |
Q |
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| T |
17192372 |
atgagtactttttggaaggatagatggagatccgatatccccttttgtga |
17192421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 28800098 - 28800248
Alignment:
| Q |
9 |
gtcttgcctctttgtggtggaaagatttgacaatgttagaggataggagtgggttgagttggttcaaatcggaggtggttagaaagatgagagaaagtat |
108 |
Q |
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| T |
28800098 |
gtcttgcctcgttgtggtggaaagatttgacaacgttggaagataggagcgggttgacttggtttaaatcagaggtggttagaaggatgagagacggaat |
28800197 |
T |
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| Q |
109 |
gagtact---ttttggaaggatagatggagatccgatatccccttttgtga |
156 |
Q |
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| T |
28800198 |
gagtactagcttttggaaggataggtggagatccaatatccccttttgtga |
28800248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 7e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 4281806 - 4281956
Alignment:
| Q |
9 |
gtcttgcctctttgtggtggaaagatttgacaatgttagaggataggagtgggttgagttggttcaaatcggaggtggttagaaagatgagagaaagtat |
108 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||| || |||||| || ||||||| | |||||||||||||||| |||| |||| | || |
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| T |
4281806 |
gtcttgcctctttgtggtggaaagatttgacaacgttggaggagagaagtgggccgacttggttctactcggaggtggttagaaggatgggagatggaat |
4281905 |
T |
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| Q |
109 |
gag---tactttttggaaggatagatggagatccgatatccccttttgtga |
156 |
Q |
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||| || ||||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
4281906 |
gagcactagtttttggaatgatagatggagatcctatacccccttttgtga |
4281956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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