View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4777-Insertion-13 (Length: 267)

Name: NF4777-Insertion-13
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4777-Insertion-13
NF4777-Insertion-13
[»] chr6 (3 HSPs)
chr6 (7-267)||(6368608-6368866)
chr6 (200-259)||(5642546-5642605)
chr6 (201-240)||(32312815-32312854)
[»] chr8 (3 HSPs)
chr8 (141-219)||(41146216-41146294)
chr8 (134-215)||(29471776-29471857)
chr8 (201-252)||(41146130-41146181)
[»] chr3 (1 HSPs)
chr3 (146-218)||(48847597-48847669)
[»] chr5 (1 HSPs)
chr5 (161-216)||(12429818-12429873)
[»] chr1 (2 HSPs)
chr1 (201-240)||(9607674-9607713)
chr1 (201-234)||(30192232-30192265)
[»] scaffold0065 (1 HSPs)
scaffold0065 (201-240)||(49577-49616)
[»] chr4 (3 HSPs)
chr4 (141-219)||(41921941-41922019)
chr4 (201-243)||(41922054-41922096)
chr4 (201-237)||(49378892-49378928)
[»] chr2 (1 HSPs)
chr2 (209-239)||(36639113-36639143)
[»] chr7 (1 HSPs)
chr7 (146-215)||(10201437-10201506)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 6368608 - 6368866
Alignment:
Q  7 acaaaattgacgaacgaaagacacatttagagatgttttataaatttgatgtatttgtagaaactatcgtgacactgcttgacatattcaagaattcaaa 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6368608 acaaaattgacgaacgaaagacacatttagtgatgttttataaatttggtgtatttgtagagactatcgtgacactgcttgacatattcaagaattcaaa 6368707  T
Q  107 ccaattgaacttaattcttccatatgcttacttggtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttg 206  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  6368708 ccaattgaacttaattcttccatatgcttacttagtg--tgtttggtttcacgtttgcaacacagaaaagcacgtttgcacgcttcccgatgcatttttg 6368805  T
Q  207 ccgtgattttcatcaaactccgttttgcaaacgcaatacctaacatgcacttagttacttg 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368806 ccgtgattttcatcaaactccgttttgcaaacgcaatacctaacatgcacttagttacttg 6368866  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 5642605 - 5642546
Alignment:
Q  200 atttttgccgtgattttcatcaaactccgttttgcaaacgcaatacctaacatgcactta 259  Q
    ||||||| |||||||||||| |||||||||||| ||||| ||||||| ||||||| ||||    
T  5642605 atttttgtcgtgattttcattaaactccgttttacaaacccaataccaaacatgctctta 5642546  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 32312854 - 32312815
Alignment:
Q  201 tttttgccgtgattttcatcaaactccgttttgcaaacgc 240  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  32312854 tttttgccgtgatttccatcaaagtccgttttgcaaacgc 32312815  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 41146294 - 41146216
Alignment:
Q  141 gtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttcat 219  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||| ||||    
T  41146294 gtgtatgtttggtttcccgtttgcaacacacaaaagcatacttgcacgctttccgatacatttttgccgtgattctcat 41146216  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 29471857 - 29471776
Alignment:
Q  134 ttacttggtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattt 215  Q
    |||||||| || ||||||||||  ||||||||||| | ||||||||| ||||| |||||||||||||||||||  |||||||    
T  29471857 ttacttggcgtgtgtttggttttccgtttgcaacatataaaagcacatttgcatgcttcccgatgcatttttgttgtgattt 29471776  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 41146181 - 41146130
Alignment:
Q  201 tttttgccgtgattttcatcaaactccgttttgcaaacgcaatacctaacat 252  Q
    |||||||||||||||  ||||||||||||||||||||| |||| || |||||    
T  41146181 tttttgccgtgatttctatcaaactccgttttgcaaacacaatgccaaacat 41146130  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 48847597 - 48847669
Alignment:
Q  146 tgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttca 218  Q
    ||||||||||  ||||||||||| | |||||||   ||||||| || ||||||||||||||||||||||||||    
T  48847597 tgtttggttttccgtttgcaacatacaaaagcatgtttgcacgttttccgatgcatttttgccgtgattttca 48847669  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 12429873 - 12429818
Alignment:
Q  161 ttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgatttt 216  Q
    |||||||||| ||||||||  |||||||||| || |||||||||||||||||||||    
T  12429873 ttgcaacacataaaagcacgtttgcacgctttccaatgcatttttgccgtgatttt 12429818  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 9607674 - 9607713
Alignment:
Q  201 tttttgccgtgattttcatcaaactccgttttgcaaacgc 240  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9607674 tttttgccgtgattttcatcaaacaccgttttgcaaacgc 9607713  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 30192265 - 30192232
Alignment:
Q  201 tttttgccgtgattttcatcaaactccgttttgc 234  Q
    ||||||||||||||||||||||||||| ||||||    
T  30192265 tttttgccgtgattttcatcaaactccattttgc 30192232  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 49577 - 49616
Alignment:
Q  201 tttttgccgtgattttcatcaaactccgttttgcaaacgc 240  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  49577 tttttgtcgtgattttcattaaactccgttttgcaaacgc 49616  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 41921941 - 41922019
Alignment:
Q  141 gtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttcat 219  Q
    ||||||||||| ||||   ||||||||||| |||| |||  |||||| ||| || ||||||||||||||||||| ||||    
T  41921941 gtgtatgtttgatttcctctttgcaacacacaaaaacacgtttgcacactttccaatgcatttttgccgtgattctcat 41922019  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 41922054 - 41922096
Alignment:
Q  201 tttttgccgtgattttcatcaaactccgttttgcaaacgcaat 243  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  41922054 tttttgccgtgatttctatcaaactccgtttttcaaacgcaat 41922096  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 49378892 - 49378928
Alignment:
Q  201 tttttgccgtgattttcatcaaactccgttttgcaaa 237  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  49378892 tttttaccgtgatttttatcaaactccgttttgcaaa 49378928  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 36639113 - 36639143
Alignment:
Q  209 gtgattttcatcaaactccgttttgcaaacg 239  Q
    |||||||||||||||||||||||||||||||    
T  36639113 gtgattttcatcaaactccgttttgcaaacg 36639143  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 10201506 - 10201437
Alignment:
Q  146 tgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattt 215  Q
    ||||||||||  ||||||||||||| |||| |||  |||||||||| | |||| |||||||| |||||||    
T  10201506 tgtttggttttccgtttgcaacacacaaaatcacgtttgcacgctttctgatgtatttttgctgtgattt 10201437  T

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