View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4777-Insertion-3 (Length: 870)
Name: NF4777-Insertion-3
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 3285933 - 3285594
Alignment:
| Q |
8 |
gtgtatagtatcggaagtcaattgatacacaaaattttgcgtcgtttataccaaacatggaaacatacgatgagggacagatgactatataattgattct |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3285933 |
gtgtatagcatcggaagtcaattgatacacaaaattttgcgttgtttataccaaacatggaaacatacgatgaggggcagatgactatataattgattct |
3285834 |
T |
|
| Q |
108 |
tagaacatatgtaatcaattgggaagaaacattgattgaatagttgacgacgtcttatcccatcactagnnnnnnnnnnnnnnnnnacaactcttttcat |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3285833 |
tagaacatatgtaatcaattgagaagaaacattgattgaatagttgacgacgtcttatcccatcactag-ttttttttttttttttacaactcttttcat |
3285735 |
T |
|
| Q |
208 |
aaacagtttctaaaacgaccctttttacaaccattaatttagaataatgcaaacttgtatacttaga---atatcgcaatatcattggattcaatattta |
304 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |||||||||||||||||||||||||||||| |
|
|
| T |
3285734 |
aaactgtttctaaaacgaccctttttacaaccattaatttagaataatgcaaacttgaacggtcaaagctatatcgcaatatcattggattcaatattta |
3285635 |
T |
|
| Q |
305 |
tttttcataaaaacttgtatacttattgttgtacgaaggat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285634 |
tttttcataaaaacttgtatacttattgttgtacgaaggat |
3285594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 595 - 859
Target Start/End: Complemental strand, 3285148 - 3284889
Alignment:
| Q |
595 |
gcacaaaaaactcaaaccaattgtgtcttacgctttactagagaaatcagggaacccatacaattgtaccttggcgtcaatcacttgaagt-aaaggcac |
693 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3285148 |
gcacaaaaaacccaaaccaattgtgtcttacgctttaccagagaagtcagggaaccgatacaattgtaccttggcgtcaatcacttgaagtaaaaggcac |
3285049 |
T |
|
| Q |
694 |
aaaagttgaggaaactcggtcaacctttgactgatttcatgctttcttcaacatatatcaacatgtcccaatggcacaatacaaccctttgctaattaaa |
793 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
3285048 |
aaaagttgaggaaactcggtcaacc-ttgactgatttcacgctttcgtcaacatatatc-acatgt-ccaatggcacaatacaa-cctttactaattaaa |
3284953 |
T |
|
| Q |
794 |
tatttcagtttcccatgccaccacttatgtttagtgtatgcccctgagttctaaaaagagtctccg |
859 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||| |||| |
|
|
| T |
3284952 |
ta-ttcagtttcccatgccaccac-tatgtttagtgtatgcacctgaggtctagaaagagtttccg |
3284889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 355 - 523
Target Start/End: Complemental strand, 3285388 - 3285220
Alignment:
| Q |
355 |
ccttttaattagcgatatgatcccattagtaaggaagttcttatgcatcatcacctgcaaaattagtcaagcaaagtctcatcactgtaggccacattgt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
3285388 |
ccttttaattagcgatatgatcccattagtaaggaagttcttatgcatcatcacctccaaaattagtcaagcaaagtctcatcactttaggtcacattgt |
3285289 |
T |
|
| Q |
455 |
tttgttaataagcttagtttttgctaaaaataccatatcatatattgtaattagacacattcaatcaaa |
523 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285288 |
tttgttaataagcttagtttttgctaaaagtaccatatcatatattgtaattagacacattcaatcaaa |
3285220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University