View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4777-Insertion-4 (Length: 780)

Name: NF4777-Insertion-4
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4777-Insertion-4
NF4777-Insertion-4
[»] chr4 (24 HSPs)
chr4 (87-771)||(42884414-42885099)
chr4 (87-203)||(32103579-32103692)
chr4 (469-627)||(15478189-15478347)
chr4 (558-625)||(13385757-13385824)
chr4 (499-627)||(4901221-4901347)
chr4 (512-593)||(7017031-7017112)
chr4 (473-593)||(34293131-34293251)
chr4 (484-578)||(17482207-17482301)
chr4 (90-175)||(9475636-9475721)
chr4 (645-713)||(13385758-13385824)
chr4 (558-626)||(23996409-23996477)
chr4 (509-593)||(34042027-34042111)
chr4 (542-627)||(51573408-51573493)
chr4 (469-545)||(40492607-40492683)
chr4 (536-626)||(24831063-24831153)
chr4 (551-625)||(40491793-40491867)
chr4 (471-584)||(5814986-5815099)
chr4 (512-593)||(8434528-8434609)
chr4 (361-410)||(9475892-9475941)
chr4 (469-521)||(9477539-9477591)
chr4 (484-535)||(51964921-51964972)
chr4 (469-519)||(15477517-15477567)
chr4 (468-510)||(47785904-47785946)
chr4 (473-510)||(34293480-34293517)
[»] chr3 (24 HSPs)
chr3 (87-463)||(39702027-39702398)
chr3 (484-626)||(27065223-27065365)
chr3 (469-626)||(93329-93485)
chr3 (473-593)||(45713713-45713833)
chr3 (484-583)||(18195504-18195602)
chr3 (468-626)||(9012129-9012286)
chr3 (468-625)||(25147595-25147752)
chr3 (551-627)||(4968450-4968526)
chr3 (488-627)||(25891258-25891397)
chr3 (468-593)||(6515193-6515318)
chr3 (95-157)||(22512760-22512821)
chr3 (484-593)||(42371002-42371111)
chr3 (423-463)||(22513048-22513088)
chr3 (473-593)||(34948131-34948251)
chr3 (473-556)||(14986010-14986093)
chr3 (512-583)||(44682163-44682234)
chr3 (512-626)||(30991609-30991723)
chr3 (518-611)||(27079848-27079941)
chr3 (645-747)||(27065298-27065396)
chr3 (510-556)||(25891649-25891695)
chr3 (470-510)||(4968393-4968433)
chr3 (645-721)||(4968458-4968532)
chr3 (542-593)||(39499471-39499522)
chr3 (701-750)||(44682266-44682314)
[»] chr1 (29 HSPs)
chr1 (469-626)||(12458414-12458571)
chr1 (469-627)||(46835190-46835348)
chr1 (469-626)||(27055633-27055789)
chr1 (107-191)||(44316607-44316691)
chr1 (469-627)||(36017894-36018053)
chr1 (469-627)||(35760434-35760591)
chr1 (484-593)||(49901281-49901390)
chr1 (485-593)||(10920520-10920628)
chr1 (473-582)||(34503768-34503877)
chr1 (491-627)||(26213884-26214020)
chr1 (512-611)||(3979644-3979743)
chr1 (469-568)||(46435639-46435737)
chr1 (492-618)||(25485595-25485720)
chr1 (560-626)||(46435396-46435462)
chr1 (648-721)||(26213955-26214026)
chr1 (468-521)||(36018238-36018291)
chr1 (473-593)||(508698-508818)
chr1 (469-568)||(27787673-27787772)
chr1 (645-721)||(46835184-46835258)
chr1 (647-721)||(12458407-12458479)
chr1 (660-750)||(32708935-32709022)
chr1 (504-584)||(24656262-24656342)
chr1 (512-627)||(32708969-32709082)
chr1 (647-751)||(36017987-36018088)
chr1 (469-520)||(29119519-29119570)
chr1 (509-584)||(37553108-37553183)
chr1 (576-622)||(27787426-27787472)
chr1 (504-582)||(30694275-30694353)
chr1 (468-510)||(32709045-32709087)
[»] chr2 (22 HSPs)
chr2 (469-627)||(10862977-10863135)
chr2 (468-626)||(13293722-13293879)
chr2 (473-584)||(30712074-30712185)
chr2 (469-593)||(3670822-3670946)
chr2 (645-750)||(10862943-10863045)
chr2 (95-176)||(43522271-43522349)
chr2 (491-593)||(23386779-23386881)
chr2 (491-593)||(31659308-31659410)
chr2 (645-746)||(36911286-36911384)
chr2 (504-584)||(44021208-44021288)
chr2 (570-625)||(9792245-9792300)
chr2 (532-621)||(34237798-34237887)
chr2 (558-627)||(36911285-36911354)
chr2 (469-521)||(10862742-10862794)
chr2 (423-463)||(43521986-43522026)
chr2 (497-593)||(44021837-44021933)
chr2 (469-511)||(9792388-9792430)
chr2 (470-511)||(42182725-42182766)
chr2 (473-535)||(6831612-6831674)
chr2 (660-721)||(9792237-9792296)
chr2 (645-749)||(13293813-13293913)
chr2 (558-627)||(19494507-19494575)
[»] chr7 (25 HSPs)
chr7 (87-178)||(42452163-42452254)
chr7 (87-309)||(21525990-21526215)
chr7 (473-627)||(23657270-23657424)
chr7 (518-627)||(9158779-9158888)
chr7 (95-176)||(19976692-19976770)
chr7 (95-176)||(41593667-41593745)
chr7 (532-641)||(2658526-2658635)
chr7 (645-750)||(1398162-1398266)
chr7 (645-750)||(9158745-9158847)
chr7 (90-168)||(17174961-17175039)
chr7 (558-626)||(1398161-1398230)
chr7 (423-464)||(41593414-41593455)
chr7 (512-584)||(33473424-33473496)
chr7 (469-521)||(33473809-33473861)
chr7 (645-747)||(2658510-2658608)
chr7 (426-464)||(19976437-19976475)
chr7 (469-510)||(43439326-43439367)
chr7 (469-521)||(2658304-2658355)
chr7 (169-221)||(42452082-42452134)
chr7 (484-582)||(9964076-9964174)
chr7 (468-518)||(24623469-24623519)
chr7 (469-534)||(11486637-11486702)
chr7 (701-750)||(23102670-23102718)
chr7 (532-581)||(24791087-24791136)
chr7 (468-521)||(43439725-43439778)
[»] chr5 (22 HSPs)
chr5 (468-627)||(10142802-10142961)
chr5 (469-626)||(10142160-10142317)
chr5 (490-626)||(14148880-14149016)
chr5 (468-625)||(39058055-39058211)
chr5 (469-626)||(18014415-18014571)
chr5 (512-625)||(36896618-36896731)
chr5 (95-176)||(23124185-23124265)
chr5 (498-627)||(26637592-26637721)
chr5 (512-627)||(18934551-18934666)
chr5 (95-176)||(14006536-14006614)
chr5 (473-584)||(24073513-24073624)
chr5 (469-567)||(5999202-5999300)
chr5 (645-750)||(26637558-26637660)
chr5 (321-405)||(19320989-19321073)
chr5 (469-599)||(4927608-4927737)
chr5 (423-463)||(14006251-14006291)
chr5 (423-463)||(23124481-23124521)
chr5 (645-721)||(10142796-10142870)
chr5 (480-584)||(12383504-12383608)
chr5 (660-750)||(36896680-36896767)
chr5 (645-722)||(10142250-10142325)
chr5 (423-464)||(19320908-19320949)
[»] chr8 (17 HSPs)
chr8 (484-626)||(30805905-30806047)
chr8 (469-626)||(3469192-3469348)
chr8 (469-626)||(42906772-42906928)
chr8 (468-624)||(6148760-6148915)
chr8 (473-593)||(8624855-8624975)
chr8 (473-593)||(4203055-4203178)
chr8 (95-176)||(12870033-12870111)
chr8 (484-607)||(1271224-1271347)
chr8 (473-593)||(9478963-9479083)
chr8 (473-593)||(42443443-42443563)
chr8 (484-593)||(14124449-14124559)
chr8 (423-455)||(12870356-12870388)
chr8 (485-584)||(13474920-13475019)
chr8 (473-535)||(1565805-1565866)
chr8 (649-690)||(1271303-1271343)
chr8 (701-750)||(1565884-1565932)
chr8 (701-750)||(8624997-8625045)
[»] scaffold0538 (4 HSPs)
scaffold0538 (493-626)||(8488-8621)
scaffold0538 (558-626)||(4023-4091)
scaffold0538 (645-750)||(3989-4090)
scaffold0538 (645-721)||(8481-8555)
[»] chr6 (11 HSPs)
chr6 (486-627)||(31730375-31730516)
chr6 (484-580)||(2925905-2926001)
chr6 (484-584)||(18053632-18053732)
chr6 (483-626)||(24081601-24081745)
chr6 (90-178)||(17912360-17912448)
chr6 (484-584)||(20468423-20468523)
chr6 (645-719)||(24081677-24081750)
chr6 (558-627)||(33483538-33483607)
chr6 (665-746)||(33483508-33483586)
chr6 (542-584)||(6851845-6851887)
chr6 (468-521)||(33483355-33483408)
[»] scaffold0002 (2 HSPs)
scaffold0002 (548-623)||(452895-452970)
scaffold0002 (645-750)||(452857-452959)
[»] scaffold0778 (1 HSPs)
scaffold0778 (473-627)||(3197-3351)
[»] scaffold0174 (1 HSPs)
scaffold0174 (423-463)||(35284-35324)
[»] scaffold1532 (1 HSPs)
scaffold1532 (512-584)||(1584-1656)


Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 87 - 771
Target Start/End: Original strand, 42884414 - 42885099
Alignment:
Q  87 agtcaagcaattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagagagaagggagtc 186  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42884414 agtcaaacaattacctttctatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagagagaagggagtg 42884513  T
Q  187 ccggattgagtggtcgacgccggtagtctcgcggtgggaaatcgatgagaatcgacggtgacaccactgtgatttgggttgaagctaatgggttttttag 286  Q
     ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  42884514 tcggattgagtggtcggcgccggcagtctcgcggtgggaaatcgatgagaatcgacggtgacaccactgtgatttgagttgaagctaatgggtttgttag 42884613  T
Q  287 gtcgcgttttgaaagagggagaaagaaggagtgcaacgtgtaagagaggaaggggaaaaggctggaaatgcgaagtgggtcagttgaaaataataaaata 386  Q
    ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  42884614 gtcacgttttgaaagagggagaaagaaggagtgtaacgtgtaacagaggaaggggaaaaggctggaaatgctggatgggtcagttgaaaataataaaata 42884713  T
Q  387 agttgagggtatttttgtaatttcacnnnnnnnggggg---gccatggcccacctcagcccatacaagcctcggccactgaggct--taatttacactca 481  Q
    || | || ||||||||||||||||||       |||||   |||||||||||||| ||||||||||| |||||||||||||||||  |||||||||||||    
T  42884714 agctaagagtatttttgtaatttcactttttttgggggtgggccatggcccaccttagcccatacaaacctcggccactgaggctgttaatttacactca 42884813  T
Q  482 cttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttt 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  42884814 cttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaaggtgtatgttaacaatctacactcacttgatgatttacactcatttt 42884913  T
Q  582 tattagttttatccaattggttacacccacctcactaatttacaccagttttattattcccagacttgattatttacgctcatttttataagttttatcc 681  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  42884914 tatcagttttatccaattggttacacccacctcactaatttataccacttttattatt-ccagacttgattatttacgctcatttttataagttttat-c 42885011  T
Q  682 aaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttccttaaaaaatgtctcatgttacaccttg 771  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42885012 aaattg-tttacactcacctcactaatttacacccac-tttcattattccaaaaattgtttccttaaaaaatgtctcatgttacaccttg 42885099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 32103579 - 32103692
Alignment:
Q  87 agtcaagcaattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagagagaagggagtc 186  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||| ||||||||||||||  |||||||||||     
T  32103579 agtcaagaaattacctttccatttggattggaaaaacagagagtgaa-aagaaaaaggttttttctttgatcttctctgaatgaga--gagaagggagtg 32103675  T
Q  187 ccggattgagtggtcga 203  Q
     ||||  ||||||||||    
T  32103676 tcggagcgagtggtcga 32103692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 469 - 627
Target Start/End: Complemental strand, 15478347 - 15478189
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| |||||||||||||| |||||||||||| |||||  || |||||| |||||||| ||| |||| |   |||||  |||||||||||    
T  15478347 taatttacacccacctaaaaacactaaggagtaaattagcaagttacattcatctaaaaacattaagaggtaagttagctgcctacatccacttgattat 15478248  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
     ||||||||||||||| | ||||||  ||||  ||||||  ||||||||||||| ||||    
T  15478247 gtacactcatttttataaattttataaaattctttacacaaacctcactaattttcacc 15478189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 625
Target Start/End: Original strand, 13385757 - 13385824
Alignment:
Q  558 cacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttaca 625  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||| |||||| |||||||||||||||||    
T  13385757 cacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctcactaatttaca 13385824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 499 - 627
Target Start/End: Original strand, 4901221 - 4901347
Alignment:
Q  499 gtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaat 598  Q
    ||||||||||||||||  ||||||||||  |||||| |||||  ||| |||||||||| ||| | ||||| |||| |||||||||| ||||||||| |||    
T  4901221 gtaaattagcaaattatccccacctaaa--cattaacatgtaaattagcaatctacacccacgtaattatgtacattcatttttataagttttatcaaat 4901318  T
Q  599 tggttacacccacctcactaatttacacc 627  Q
    |  |||||  ||||| |||||||||||||    
T  4901319 tatttacattcaccttactaatttacacc 4901347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 512 - 593
Target Start/End: Original strand, 7017031 - 7017112
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttat 593  Q
    |||||||||||||||| || |||| || | |||| ||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  7017031 ttacacccacctaaaaacactaaggtgcaagttagcaacctacactcacttgattatttacactcatttttataagtattat 7017112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 593
Target Start/End: Original strand, 34293131 - 34293251
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||| ||| |||||||| ||||||| || |||||||  ||||||||| |||||| |||||| || | |||| ||| ||||||   |||||||||||||    
T  34293131 ttacacccacctaaaaacattaaggtgcaagttagcaagctacacccacgtaaaattattaaggtgcaagttagcaacctacacctgcttgattatttac 34293230  T
Q  573 actcatttttattagttttat 593  Q
    |||||||||||| ||| ||||    
T  34293231 actcatttttataagtattat 34293251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 17482301 - 17482207
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcat 578  Q
    |||||||||||||||| |  |||||||  || ||||||||||||| |||||| || | |||| ||| ||||||| ||||||||||||||||||||    
T  17482301 taaaaacactaaggtgcacgttagcaagctatacccacctaaaattattaaggtgcaagttagcaacctacacttacttgattatttacactcat 17482207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 9475636 - 9475721
Alignment:
Q  90 caagcaattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagag 175  Q
    |||| ||||||||||| |||||||||| ||||||| |||||  | || ||||||||||||||||| || |||||| ||||||||||    
T  9475636 caagaaattacctttcaatttggattgaaaaaacagagagtcgaaaataaaaagggtttttgtttaatcttctctaaatgagagag 9475721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 645 - 713
Target Start/End: Original strand, 13385758 - 13385824
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttaca 713  Q
    |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||    
T  13385758 acttgattatttacactcatgtttataagttttat-caaattg-tttacactcacctcactaatttaca 13385824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 558 - 626
Target Start/End: Original strand, 23996409 - 23996477
Alignment:
Q  558 cacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
    ||||||||||| ||||||||||||||| | ||||||| ||||| ||||| |||||| ||||||||||||    
T  23996409 cacttgattatatacactcatttttataaattttatcaaattgtttacaaccaccttactaatttacac 23996477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 509 - 593
Target Start/End: Complemental strand, 34042111 - 34042027
Alignment:
Q  509 aaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttat 593  Q
    ||||||||||||||||||| || |||| || | |||| ||| |||||  ||||||||||||||||||||||||||| ||| ||||    
T  34042111 aaattacacccacctaaaaacactaaggtgcaagttagcaacctacatccacttgattatttacactcatttttataagtattat 34042027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 542 - 627
Target Start/End: Original strand, 51573408 - 51573493
Alignment:
Q  542 gttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    |||| ||| |||||| ||||||||||||||||||||||||||| | ||||    |||   ||||||||||||||||||||||||||    
T  51573408 gttagcaacctacacccacttgattatttacactcatttttataacttttgataaataatttacacccacctcactaatttacacc 51573493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 545
Target Start/End: Complemental strand, 40492683 - 40492607
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgtta 545  Q
    |||||||||| |||||||||||| ||| |||||||||| ||| ||| | ||| |||||||||||||| |||| ||||    
T  40492683 taatttacacccacttaaaaacattaacgtgtaaattaacaagttatatccaactaaaatcattaaggtgtaagtta 40492607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 626
Target Start/End: Complemental strand, 24831153 - 24831063
Alignment:
Q  536 atgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
    ||||| |||| ||| |||||  ||||||||||| ||||||||||||||| | ||| ||  ||||| |||||||||||  ||||||||||||    
T  24831153 atgtaagttagcaacctacatccacttgattatatacactcatttttataaatttgattaaattgtttacacccaccatactaatttacac 24831063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 625
Target Start/End: Complemental strand, 40491867 - 40491793
Alignment:
Q  551 ctacactcacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttaca 625  Q
    ||||||||||||||||||||| || ||||||||| | ||| ||  ||||| |||||| ||||||| |||||||||    
T  40491867 ctacactcacttgattatttatacacatttttataaatttaattaaattgtttacactcacctcattaatttaca 40491793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 584
Target Start/End: Complemental strand, 5815099 - 5814986
Alignment:
Q  471 atttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattattt 570  Q
    |||||||| ||| |||||| ||||||| |||||||| |||  |||| |||| |||||| |||||    | ||||| ||| |||||||||||| |||||||    
T  5815099 atttacacccacctaaaaatactaaggagtaaattaacaagctacatccacataaaattattaaagaatgtgttagcaacctacactcacttaattattt 5815000  T
Q  571 acactcatttttat 584  Q
    | ||||| ||||||    
T  5814999 aaactcacttttat 5814986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 593
Target Start/End: Complemental strand, 8434609 - 8434528
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttat 593  Q
    |||||| ||||||||| || |||| || | |||| ||  |||||| ||||||||||||||||||||||||||| ||| ||||    
T  8434609 ttacactcacctaaaaacactaaggtgcaagttagcatcctacacccacttgattatttacactcatttttataagtattat 8434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 9475892 - 9475941
Alignment:
Q  361 gtgggtcagttgaaaataataaaataagttgagggtatttttgtaatttc 410  Q
    ||||| || ||||||| ||||||||||| |||||||||||||||||||||    
T  9475892 gtgggccaattgaaaaaaataaaataagctgagggtatttttgtaatttc 9475941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 469 - 521
Target Start/End: Complemental strand, 9477591 - 9477539
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccac 521  Q
    |||||||||| ||| ||||||||||||||| |||||||||||  |||||||||    
T  9477591 taatttacacccacctaaaaacactaaggtttaaattagcaagctacacccac 9477539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 535
Target Start/End: Complemental strand, 51964972 - 51964921
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaag 535  Q
    ||||||||||||| || || ||||||| ||||||||||||||||| ||||||    
T  51964972 taaaaacactaagatgcaagttagcaagttacacccacctaaaattattaag 51964921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 519
Target Start/End: Original strand, 15477517 - 15477567
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacaccc 519  Q
    |||||||||  ||| ||||||||||||||||||||||||||| | ||||||    
T  15477517 taatttacatccacctaaaaacactaaggtgtaaattagcaagtcacaccc 15477567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 47785904 - 47785946
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaa 510  Q
    ||||||||||||||| ||||| || ||||||||||||||||||    
T  47785904 ttaatttacactcacctaaaaccaataaggtgtaaattagcaa 47785946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 34293517 - 34293480
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaa 510  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  34293517 ttacactcacttaaaaacactgaggtgtaagttagcaa 34293480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 87 - 463
Target Start/End: Complemental strand, 39702398 - 39702027
Alignment:
Q  87 agtcaagcaattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagagagaagggagtc 186  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||    ||||||||||||||     
T  39702398 agtcaagcaattacctttccatttagattggaaaaacaaagactgaacaagaaaaaggggttttgtttgatattctctaaa----agagagaagggagtg 39702303  T
Q  187 ccggattgagtggtcgacgccggtagtctcgcggtgggaaatcgatgagaatcgacggtgacaccactgtgatttgggttgaagctaatgggttttttag 286  Q
    ||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| |   |||||| ||||||||||||||| ||| ||||    
T  39702302 ccggagtgagtggtcggcgctggcagtctcgcggtgggaaatcgatgagaatcgacggtgacacta---tgatttaggttgaagctaatggatttgttag 39702206  T
Q  287 gtcgcgttttgaaagagggagaaagaaggagtgcaacgtgtaagagaggaaggggaaaaggctggaaatgcgaagtgggtcagttgaaaataataaaata 386  Q
    ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||  |||||   ||| | ||||||||||||||||||||    
T  39702205 gtcgcgttttgaaagagggagaaagaaggagtgtaaggtgtaacagaggaaggggaaaaggctgagaatgctgggtgagccagttgaaaataataaaata 39702106  T
Q  387 agttgagggtatttttgtaatttcac---nnnnnnnggggggccatggcccacctcagcccatacaagcctcggccactg 463  Q
    || ||| |||||||||||||||||||          || ||||||||||||||||||||||||||||||||| |||||||    
T  39702105 agctga-ggtatttttgtaatttcactttttttggtggtgggccatggcccacctcagcccatacaagcctccgccactg 39702027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 484 - 626
Target Start/End: Original strand, 27065223 - 27065365
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttta 583  Q
    ||||||||||||||||||||||||||| |||||||||||||||| || |||  | || |||  |||  ||||| ||||||||||| ||||||||||||||    
T  27065223 taaaaacactaaggtgtaaattagcaagttacacccacctaaaaacactaatgtataagtttgcaacatacacccacttgattatatacactcattttta 27065322  T
Q  584 ttagttttatccaattggttacacccacctcactaatttacac 626  Q
    | | ||||||| ||||| |||||| |||||||||| |||||||    
T  27065323 taaattttatcaaattgtttacactcacctcactattttacac 27065365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 626
Target Start/End: Original strand, 93329 - 93485
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||  | |||| |||| |||| ||| |||||| |||||||||||    
T  93329 taatttacacccacctaaat-cactaaggtgtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattat 93427  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
     ||||||||||||||| | ||||||| ||||  ||||| ||| || ||||||||||||    
T  93428 ctacactcatttttataaattttatcaaattatttacaaccatcttactaatttacac 93485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 473 - 593
Target Start/End: Original strand, 45713713 - 45713833
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||| ||| |||||||||||||||| || |||||||  |||||||||||||||| |||||| || | |||| ||| ||||||||||||||||||||||    
T  45713713 ttacacccacctaaaaacactaaggtgcaagttagcaagctacacccacctaaaattattaaggtgcaagttagcaacctacactcacttgattatttac 45713812  T
Q  573 actcatttttattagttttat 593  Q
    ||| |||||||| ||| ||||    
T  45713813 acttatttttataagtattat 45713833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 484 - 583
Target Start/End: Original strand, 18195504 - 18195602
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttta 583  Q
    ||||||||||||| || |||||||||||||||||| ||||||||| ||||||||| |||||| ||| |||||| ||||| ||||||||||||||||||||    
T  18195504 taaaaacactaagctgcaaattagcaaattacacc-acctaaaattattaagatgcatgttagcaacctacacccacttaattatttacactcattttta 18195602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 468 - 626
Target Start/End: Complemental strand, 9012286 - 9012129
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgatta 567  Q
    ||||||||||| ||| ||| ||||||||||||||||  ||||| | ||| |||||||||| || |||| |||| |||||||| |||||| || |||||||    
T  9012286 ttaatttacacccacctaacaacactaaggtgtaaacaagcaagt-acatccacctaaaagcactaaggtgtaagttaacaacctacacccatttgatta 9012188  T
Q  568 tttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
    | ||||| | ||||||| | |||| || ||||  ||||| |||||||||||||||||||    
T  9012187 tatacacacttttttataaattttgtcaaattatttacatccacctcactaatttacac 9012129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 468 - 625
Target Start/End: Original strand, 25147595 - 25147752
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgatta 567  Q
    |||||||||||  || | |||| ||||||||| || |||||||  |||||||||||||||| |||||| || | |||| ||| |||||   |||||||||    
T  25147595 ttaatttacaccaacatgaaaatactaaggtgcaagttagcaagctacacccacctaaaattattaaggtgcaagttagcaacctacatctacttgatta 25147694  T
Q  568 tttacactcatttttattagttttatccaattggttacacccacctcactaatttaca 625  Q
    ||||||||||||||||| | ||||| | |||   || |||||||||||||||||||||    
T  25147695 tttacactcatttttataatttttaacaaataatttgcacccacctcactaatttaca 25147752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 551 - 627
Target Start/End: Original strand, 4968450 - 4968526
Alignment:
Q  551 ctacactcacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    |||||||||||||||||||||||||||||||||  |||||| || ||||| ||||||||| ||||||||||||||||    
T  4968450 ctacactcacttgattatttacactcatttttagaagttttttcaaattgtttacacccatctcactaatttacacc 4968526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 488 - 627
Target Start/End: Original strand, 25891258 - 25891397
Alignment:
Q  488 aacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattag 587  Q
    |||||||||||| || |||| ||  ||||||||||||||||  | ||| || | |||| ||| ||| |||||||||||||| ||||||||||||||| |     
T  25891258 aacactaaggtgcaagttaggaagctacacccacctaaaattttaaaggtgcaagttagcaacctatactcacttgattatgtacactcatttttataac 25891357  T
Q  588 ttttatccaattggttacacccacctcactaatttacacc 627  Q
    ||||| | |||   || |||||||||||||||||||||||    
T  25891358 ttttaacaaataatttgcacccacctcactaatttacacc 25891397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 468 - 593
Target Start/End: Original strand, 6515193 - 6515318
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgatta 567  Q
    |||| |||||||||  |||||| | ||||||| || |||||||  |||| | ||||||||| |||||| || | |||| ||| |||||| ||||||||||    
T  6515193 ttaacttacactcatctaaaaatattaaggtgcaagttagcaagctacatctacctaaaattattaaggtgcaagttagcaacctacacccacttgatta 6515292  T
Q  568 tttacactcatttttattagttttat 593  Q
    ||||||||||||||||| ||| ||||    
T  6515293 tttacactcatttttataagtattat 6515318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 22512760 - 22512821
Alignment:
Q  95 aattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgat 157  Q
    |||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||    
T  22512760 aattacctttccatttagataggaaaaacagagagtgaa-aagaaaaagggtttttgtttgat 22512821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 593
Target Start/End: Complemental strand, 42371111 - 42371002
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttta 583  Q
    |||||| ||||||||| || |||||||  |||||||||||| ||  |||||| || | |||| ||| |||||  ||||||||||||||||||||||||||    
T  42371111 taaaaatactaaggtgcaagttagcaagctacacccacctataactattaaggtgcaagttagcaacctacatccacttgattatttacactcattttta 42371012  T
Q  584 ttagttttat 593  Q
    | ||| ||||    
T  42371011 taagtattat 42371002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 22513048 - 22513088
Alignment:
Q  423 gggccatggcccacctcagcccatacaagcctcggccactg 463  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22513048 gggccatggcccacctcagcccatacaagcctcggccactg 22513088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 473 - 593
Target Start/End: Original strand, 34948131 - 34948251
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||||||  |||||||||||||||| ||| ||||||    |||||||||||||| |||| | || | |||| |||||||||  |||||||||||||||    
T  34948131 ttacactcatctaaaaacactaaggtgcaaactagcaagcctcacccacctaaaattattagggtgcaagttagcaatctacatccacttgattatttac 34948230  T
Q  573 actcatttttattagttttat 593  Q
    | || ||||||| ||| ||||    
T  34948231 attcttttttataagtattat 34948251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 473 - 556
Target Start/End: Complemental strand, 14986093 - 14986010
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacac 556  Q
    |||||| ||| |||||||||||||||| || ||||||| ||||||||||||||||| |||||| || | |||| ||| ||||||    
T  14986093 ttacacccacctaaaaacactaaggtgcaagttagcaagttacacccacctaaaattattaaggtgcaagttagcaacctacac 14986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 512 - 583
Target Start/End: Original strand, 44682163 - 44682234
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttta 583  Q
    |||||||||||||| | || |||| || | |||||||| |||||| ||||||||||||||||||||||||||    
T  44682163 ttacacccacctaagaacactaaggtgcaagttaacaacctacacccacttgattatttacactcattttta 44682234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 512 - 626
Target Start/End: Original strand, 30991609 - 30991723
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccac 611  Q
    ||||| ||||||||||  | |||| |||| |||| |||  ||||  ||||||||||| ||||||||||||||| | ||||||| ||||| ||||| |||     
T  30991609 ttacatccacctaaaaatactaaggtgtaagttagcaacatacatccacttgattatatacactcatttttataaattttatcaaattgtttacaaccat 30991708  T
Q  612 ctcactaatttacac 626  Q
    || ||||||||||||    
T  30991709 cttactaatttacac 30991723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 518 - 611
Target Start/End: Original strand, 27079848 - 27079941
Alignment:
Q  518 ccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccac 611  Q
    |||| |||||| |||||| |||| |||| |||  ||||| ||||| |||||||||||| |||||||| ||||||||| ||||| ||||| ||||    
T  27079848 ccacataaaattattaaggtgtaagttatcaacttacacccacttaattatttacacttatttttataagttttatcaaattgtttacaaccac 27079941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 645 - 747
Target Start/End: Original strand, 27065298 - 27065396
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||| ||| ||||||||||||| |||||| ||||||| ||||||||| |||||||| ||||||| ||||  ||||  |||| || |||||||||    
T  27065298 acttgattatatacactcatttttataaattttat-caaattg-tttacactcacctcactattttacacacactcatcat--ttccaaatattgtttcc 27065393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 556
Target Start/End: Complemental strand, 25891695 - 25891649
Alignment:
Q  510 aattacacccacctaaaatcattaagatgtatgttaacaatctacac 556  Q
    |||||||||||||||||||||||||| || | |||||||||||||||    
T  25891695 aattacacccacctaaaatcattaaggtgcaagttaacaatctacac 25891649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 4968393 - 4968433
Alignment:
Q  470 aatttacactcacttaaaaacactaaggtgtaaattagcaa 510  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  4968393 aatttaccctcatttaaaaacactaaggtgtaaattagcaa 4968433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 645 - 721
Target Start/End: Original strand, 4968458 - 4968532
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttt 721  Q
    |||||||||||||| |||||||||| ||||||| | ||||||| ||||||| |  |||||||||||||||| |||||    
T  4968458 acttgattatttacactcatttttagaagtttt-ttcaaattg-tttacacccatctcactaatttacacctacttt 4968532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 593
Target Start/End: Original strand, 39499471 - 39499522
Alignment:
Q  542 gttaacaatctacactcacttgattatttacactcatttttattagttttat 593  Q
    |||| ||| |||||| ||||||||||||||||||||||||||| ||| ||||    
T  39499471 gttagcaacctacacccacttgattatttacactcatttttataagtattat 39499522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 750
Target Start/End: Original strand, 44682266 - 44682314
Alignment:
Q  701 tcactaatttacacccacttttcattattcccaaaattgtttccttaaaa 750  Q
    ||||||||||||||||| ||||||| ||||| || |||||||||||||||    
T  44682266 tcactaatttacaccca-ttttcatcattccaaatattgtttccttaaaa 44682314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 469 - 626
Target Start/End: Complemental strand, 12458571 - 12458414
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |||| |||  ||||| || ||||||||    
T  12458571 taatttacacccacctaaaaacactaaggtgtaaattagcaagttacacccacctaaaatcattaaggtgcaagttaccaacttacacccatttgattat 12458472  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
    || ||||||||||||| | ||||||| ||||| |||||| ||||||||||||||||||    
T  12458471 ttgcactcatttttataaattttatcaaattgtttacacacacctcactaatttacac 12458414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 469 - 627
Target Start/End: Complemental strand, 46835348 - 46835190
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| |||||||| ||||||||||||||||||  |||| ||||||||||  |||||| |||| |||| |||   |||| |||||||||||    
T  46835348 taatttacacacacctaaaaacattaaggtgtaaattagcaagctacatccacctaaaaatattaaggtgtaagttagcaaataacacccacttgattat 46835249  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
     ||||||||||||||| | ||||||| ||||| ||||||||| ||||||||||||||||    
T  46835248 atacactcatttttataaattttatcaaattgtttacacccaactcactaatttacacc 46835190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 469 - 626
Target Start/End: Original strand, 27055633 - 27055789
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||  | |||| |||| |||| ||| |||||| |||||||||||    
T  27055633 taatttacacccacctaaat-cactaaggtgtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattat 27055731  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
     ||||||||||||||| | ||||||| ||||| ||||| |||||| ||||||||||||    
T  27055732 atacactcatttttataaattttatcaaattgtttacaaccaccttactaatttacac 27055789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 44316607 - 44316691
Alignment:
Q  107 atttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagagagaagggagtcccgga 191  Q
    |||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  44316607 atttggattggaaaaacaaagagtcaaaaataaaaagggtttttgtttgatcttctctgaatgagagagagaagggagtgccgga 44316691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 469 - 627
Target Start/End: Original strand, 36017894 - 36018053
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgtt-aacaatctacactcacttgatta 567  Q
    |||||||||| ||| | |||||| ||||||||||| ||||||| |||||||||||||||  | |||| |||| ||| || ||| |||||||| |||||||    
T  36017894 taatttacacccacctcaaaacattaaggtgtaaactagcaaactacacccacctaaaaatactaaggtgtaagttaaaaaatatacactcatttgatta 36017993  T
Q  568 tttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    | ||||||| ||||||| | ||||||| ||||| |||||||||| |||||||||| ||||    
T  36017994 tatacactcgtttttataaattttatcaaattgtttacacccacttcactaatttgcacc 36018053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 469 - 627
Target Start/End: Complemental strand, 35760591 - 35760434
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||  ||||||||||||||||||||   |||||||||||||||  | |||| |||| |||| ||| |||||| |||||||||||    
T  35760591 taatttacacccacctaaat-cactaaggtgtaaattagcatgctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattat 35760493  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
     ||||||||||||||| | ||||||| ||||| ||||| ||| || |||||||||||||    
T  35760492 atacactcatttttataaattttatcaaattgtttacagccatcttactaatttacacc 35760434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 484 - 593
Target Start/End: Original strand, 49901281 - 49901390
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttta 583  Q
    |||||| | |||||||||| ||||||||||||| ||||||||||| |||||| |  | |||| ||| ||||| ||| |||||||||||||||||||||||    
T  49901281 taaaaatattaaggtgtaagttagcaaattacatccacctaaaattattaaggttcaagttagcaacctacattcatttgattatttacactcattttta 49901380  T
Q  584 ttagttttat 593  Q
    | ||| ||||    
T  49901381 taagtattat 49901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 485 - 593
Target Start/End: Original strand, 10920520 - 10920628
Alignment:
Q  485 aaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttat 584  Q
    ||||||| ||||||  || |||||||  |||||||||||||||| |||||| || | |||| ||| |||| ||||||| |||||||||||||||||||||    
T  10920520 aaaaacattaaggtacaagttagcaagctacacccacctaaaattattaaggtgcaagttagcaacctacgctcacttaattatttacactcatttttat 10920619  T
Q  585 tagttttat 593  Q
     | ||||||    
T  10920620 aaattttat 10920628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 34503877 - 34503768
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||| ||| ||||||||||| |||| || |||||||  |||| ||| ||||||| ||||||||| | |||| ||| |||||| ||||||||||||||     
T  34503877 ttacacccacctaaaaacactagggtgcaagttagcaagctacatccatctaaaattattaagatgcaagttaccaacctacacccacttgattatttat 34503778  T
Q  573 actcattttt 582  Q
    ||| ||||||    
T  34503777 acttattttt 34503768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 491 - 627
Target Start/End: Original strand, 26213884 - 26214020
Alignment:
Q  491 actaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttt 590  Q
    ||||||||||| ||||||||   |||  |||||| |||||| ||| | || ||||  |||||| || ||  |||||||||||||| |||||||| | |||    
T  26213884 actaaggtgtatattagcaagcaacattcacctagaatcatcaaggtataagttagtaatctatacccatctgattatttacacttatttttataatttt 26213983  T
Q  591 tatccaattggttacacccacctcactaatttacacc 627  Q
    |||| ||||| |||||| ||| |||||||||||||||    
T  26213984 tatcaaattgtttacactcacgtcactaatttacacc 26214020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 512 - 611
Target Start/End: Original strand, 3979644 - 3979743
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccac 611  Q
    |||||||||||||||| ||||  | ||||  ||| ||| |||||| |||||| |||| ||||||||||||||| | ||||||| ||||| ||||||||||    
T  3979644 ttacacccacctaaaaacattttggtgtaaattagcaagctacacccacttggttatatacactcatttttataaattttatcaaattgtttacacccac 3979743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 568
Target Start/End: Complemental strand, 46435737 - 46435639
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||  | |||| |||| |||| ||| |||||| |||||||||||    
T  46435737 taatttacacccacctaaat-cactaaggtgtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattat 46435639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 618
Target Start/End: Complemental strand, 25485720 - 25485595
Alignment:
Q  492 ctaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagtttt 591  Q
    |||||| |||||||||||| | ||||| |||||||| ||||| |  ||| |||| |||  ||||||||||||| |||||||| |||||||||  ||||||    
T  25485720 ctaaggagtaaattagcaactgacacctacctaaaaccattatggagtaagttagcaacttacactcacttga-tatttacattcatttttagaagtttt 25485622  T
Q  592 atccaattggttacacccacctcacta 618  Q
    ||| ||||  ||||||| |||| ||||    
T  25485621 atcaaattatttacacctaccttacta 25485595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 626
Target Start/End: Complemental strand, 46435462 - 46435396
Alignment:
Q  560 cttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
    ||||||||| ||||||||||||||| | ||||||| ||||| ||||| |||||| ||||||||||||    
T  46435462 cttgattatatacactcatttttataaattttatcaaattgtttacaaccaccttactaatttacac 46435396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 648 - 721
Target Start/End: Original strand, 26213955 - 26214026
Alignment:
Q  648 tgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttt 721  Q
    ||||||||||| || |||||||||| ||||||| ||||||||| |||||| | |||||||||||||||||||||    
T  26213955 tgattatttacacttatttttataatttttatc-aaattgttt-acactcacgtcactaatttacacccacttt 26214026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 468 - 521
Target Start/End: Complemental strand, 36018291 - 36018238
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccac 521  Q
    ||||||||||| |||||||||||||||| |||||||||| |||| |||||||||    
T  36018291 ttaatttacacccacttaaaaacactaacgtgtaaattaacaaactacacccac 36018238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 593
Target Start/End: Complemental strand, 508818 - 508698
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||| ||| |||||||||||| ||  || |||||||| |||| ||||||||||| | |||| || | ||||  ||  ||||| |||||||||| ||||    
T  508818 ttacacccacctaaaaacactaaagtacaagttagcaaactacatccacctaaaattactaaggtgcaagttacaaacatacacccacttgattacttac 508719  T
Q  573 actcatttttattagttttat 593  Q
    |||||||||||| ||| ||||    
T  508718 actcatttttataagtattat 508698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 568
Target Start/End: Complemental strand, 27787772 - 27787673
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaa-gatgtatgttaacaatctacactcacttgatta 567  Q
    |||||||||| ||| ||||||||| ||||||||||||||||| ||| |||||||||||| || ||| | | || |||| ||| |||||| ||||||||||    
T  27787772 taatttacac-cacctaaaaacacaaaggtgtaaattagcaagttatacccacctaaaaacactaatgttataagttagcaacctacacacacttgatta 27787674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 721
Target Start/End: Complemental strand, 46835258 - 46835184
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttt 721  Q
    |||||||||| ||| ||||||||||||| |||||| ||||||| ||||||| |  ||||||||||||||||||||||    
T  46835258 acttgattatatacactcatttttataaattttat-caaattg-tttacacccaactcactaatttacacccacttt 46835184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 721
Target Start/End: Complemental strand, 12458479 - 12458407
Alignment:
Q  647 ttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttt 721  Q
    |||||||||| | ||||||||||||| |||||| ||||||| ||||||| | |||||||||||||||| ||||||    
T  12458479 ttgattatttgcactcatttttataaattttat-caaattg-tttacacacacctcactaatttacactcacttt 12458407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 750
Target Start/End: Complemental strand, 32709022 - 32708935
Alignment:
Q  660 ctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttccttaaaa 750  Q
    ||||||||||||| ||||||| |||||||||  ||||| |||||||||||||||||||| |||||| ||||| || ||| ||| |||||||    
T  32709022 ctcatttttataaattttatc-aaattgtttg-cactcacctcactaatttacacccac-tttcatgattccaaatattattttcttaaaa 32708935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 504 - 584
Target Start/End: Original strand, 24656262 - 24656342
Alignment:
Q  504 ttagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttat 584  Q
    |||||||| |||||||| ||||||| ||| ||||| | |||| |||  ||||| ||||| |||||||| ||||||||||||    
T  24656262 ttagcaaactacacccatctaaaattatttagatggaagttagcaacatacacccacttaattatttatactcatttttat 24656342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 627
Target Start/End: Complemental strand, 32709082 - 32708969
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccac 611  Q
    |||||| || |||||| || |||| |||| |||| |||  ||||  ||||||||||| |||  |||||||||| | ||||||| ||||| || ||| |||    
T  32709082 ttacactcatctaaaaacactaaggtgtaagttagcaacatacatccacttgattatatac--tcatttttataaattttatcaaattgtttgcactcac 32708985  T
Q  612 ctcactaatttacacc 627  Q
    ||||||||||||||||    
T  32708984 ctcactaatttacacc 32708969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 647 - 751
Target Start/End: Original strand, 36017987 - 36018088
Alignment:
Q  647 ttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcctt 746  Q
    |||||||| ||| ||| ||||||||| ||||||| ||||||||| |||| | | |||||||||| ||||||||||| || ||| | || |||||||||||    
T  36017987 ttgattatatacactcgtttttataaattttatc-aaattgttt-acacccacttcactaatttgcacccactttt-atcatttcaaatattgtttcctt 36018083  T
Q  747 aaaaa 751  Q
    |||||    
T  36018084 aaaaa 36018088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 29119570 - 29119519
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacaccca 520  Q
    |||||||||| |||||||||| |||||||||||| |||||||  ||||||||    
T  29119570 taatttacacccacttaaaaatactaaggtgtaagttagcaacctacaccca 29119519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 584
Target Start/End: Original strand, 37553108 - 37553183
Alignment:
Q  509 aaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttat 584  Q
    |||||||||||| |||||| || |||| || | |||| ||| |||||| ||||||||||| || ||||||||||||    
T  37553108 aaattacacccatctaaaaacactaaggtgcaagttagcaacctacacccacttgattatctatactcatttttat 37553183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 622
Target Start/End: Complemental strand, 27787472 - 27787426
Alignment:
Q  576 catttttattagttttatccaattggttacacccacctcactaattt 622  Q
    ||||||||| | ||||||| ||||| |||||||||||||||||||||    
T  27787472 catttttataaattttatcaaattgtttacacccacctcactaattt 27787426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 504 - 582
Target Start/End: Original strand, 30694275 - 30694353
Alignment:
Q  504 ttagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttt 582  Q
    |||||||  |||| ||||||||||| |||||| || | |||| ||| || ||| ||||||||||||||||||| |||||    
T  30694275 ttagcaagctacatccacctaaaattattaaggtgcaagttagcaacctccacccacttgattatttacactctttttt 30694353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 32709087 - 32709045
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaa 510  Q
    ||||||||||||||  ||||||||||||||||||| |||||||    
T  32709087 ttaatttacactcatctaaaaacactaaggtgtaagttagcaa 32709045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 7e-39; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 469 - 627
Target Start/End: Complemental strand, 10863135 - 10862977
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||||||||||||||||||||||||   ||||||||||||||| ||  ||| |||| |||| ||| |||||| |||||||||||    
T  10863135 taatttacacccacctaaaaacactaaggtgtaaattagcaggctacacccacctaaaaacaccaaggtgtaagttagcaacctacacccacttgattat 10863036  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
     ||||||||||||||| | ||||||| ||||| |||||| |||||||||||||||||||    
T  10863035 gtacactcatttttataaattttatcaaattgtttacactcacctcactaatttacacc 10862977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 468 - 626
Target Start/End: Original strand, 13293722 - 13293879
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgatta 567  Q
    ||||||||||| ||| ||||||||| |||||||||||||| ||  |||||||||||| ||| |||||| |||| |||| ||| ||||| |||||||||||    
T  13293722 ttaatttacacccacctaaaaacaccaaggtgtaaattaggaaggtacacccacctataattattaaggtgtaagttagcaacctacattcacttgatta 13293821  T
Q  568 tttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
    ||||||||| ||||||| | ||||||| ||||  ||||||  |||||||||||||||||    
T  13293822 tttacactcttttttataaattttatcaaatt-tttacacatacctcactaatttacac 13293879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 584
Target Start/End: Original strand, 30712074 - 30712185
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||||||| ||||| |||||||||| || ||||||| |||||||||| ||||||  ||||| |||| |||| ||| ||||||||||||||||||||||    
T  30712074 ttacactcacctaaaatcactaaggtgcaagttagcaagttacacccacataaaattgttaaggtgtaagttagcaacctacactcacttgattatttac 30712173  T
Q  573 actcatttttat 584  Q
    |||| |||||||    
T  30712174 actcctttttat 30712185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 469 - 593
Target Start/End: Complemental strand, 3670946 - 3670822
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| |||||| | ||||||| || ||||||| |||||||||||||| || |||||| || | |||| ||| |||||| |||||||||||    
T  3670946 taatttacacccacctaaaaatattaaggtgcaagttagcaagttacacccacctaatattattaaggtgcaagttagcaacctacacccacttgattat 3670847  T
Q  569 ttacactcatttttattagttttat 593  Q
    ||||||| |||||||| ||| ||||    
T  3670846 ttacacttatttttataagtattat 3670822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 645 - 750
Target Start/End: Complemental strand, 10863045 - 10862943
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||| ||| ||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||| |||||| ||| | || |||||||||    
T  10863045 acttgattatgtacactcatttttataaattttatc-aaattgttt-acactcacctcactaatttacacccac-tttcatcatttcaaatattgtttcc 10862949  T
Q  745 ttaaaa 750  Q
    ||||||    
T  10862948 ttaaaa 10862943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 43522349 - 43522271
Alignment:
Q  95 aattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagaga 176  Q
    |||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  43522349 aattacctttccatttggataggaaaaaca--gagtgaa-aagaaaaagggtttttgtttgatcttttttgaatgagagaga 43522271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 491 - 593
Target Start/End: Original strand, 23386779 - 23386881
Alignment:
Q  491 actaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttt 590  Q
    ||||||||| || |||||||  ||||| | | |||||| ||||||||||| || | |||| ||||||||||| ||||||||||||||||||||| ||| |    
T  23386779 actaaggtgcaagttagcaagctacactcgcttaaaattattaagatgtaagtcagcaatttacactcacttaattatttacactcatttttataagtat 23386878  T
Q  591 tat 593  Q
    |||    
T  23386879 tat 23386881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 491 - 593
Target Start/End: Original strand, 31659308 - 31659410
Alignment:
Q  491 actaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttt 590  Q
    ||||||||| || |||||||  ||||||||| |||||| |||||| || | |||| ||| |||||| |||||||||||||| |||||||||||| ||| |    
T  31659308 actaaggtgcaagttagcaagctacacccacataaaattattaaggtgcaagttagcaacctacacccacttgattatttatactcatttttataagtat 31659407  T
Q  591 tat 593  Q
    |||    
T  31659408 tat 31659410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 746
Target Start/End: Original strand, 36911286 - 36911384
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||| ||| ||||||||||||| ||||||| ||||| |||||||||| ||||||| |||||||||||| |||||| ||||  || |||||||||    
T  36911286 acttgattatatacactcatttttataaattttatc-aaatt-ttttacactcacctcactgatttacacccac-tttcatcattcaaaatattgtttcc 36911382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 504 - 584
Target Start/End: Original strand, 44021208 - 44021288
Alignment:
Q  504 ttagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttat 584  Q
    |||||||  |||||||||||||||| |||||| || | |||| ||||||||||  | ||||||||||||||||||||||||    
T  44021208 ttagcaagctacacccacctaaaattattaaggtgcaagttagcaatctacacctatttgattatttacactcatttttat 44021288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 570 - 625
Target Start/End: Complemental strand, 9792300 - 9792245
Alignment:
Q  570 tacactcatttttattagttttatccaattggttacacccacctcactaatttaca 625  Q
    ||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||    
T  9792300 tacactcatttttataaattttatcaaattgtttacacccacctcactaatttaca 9792245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 532 - 621
Target Start/End: Complemental strand, 34237887 - 34237798
Alignment:
Q  532 taagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatt 621  Q
    |||| |||| ||||||||| ||| |||||||||||||||| | | |||||||| ||||||||  ||||  |||||||||||| |||||||    
T  34237887 taaggtgtaagttaacaatttacgctcacttgattatttataattatttttataagttttattaaattatttacacccaccttactaatt 34237798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 627
Target Start/End: Original strand, 36911285 - 36911354
Alignment:
Q  558 cacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    ||||||||||| ||||||||||||||| | ||||||| ||||  |||||| ||||||||| |||||||||    
T  36911285 cacttgattatatacactcatttttataaattttatcaaattttttacactcacctcactgatttacacc 36911354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 521
Target Start/End: Original strand, 10862742 - 10862794
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccac 521  Q
    |||||||||| ||| |||||||||||||||||||||||||||  |||||||||    
T  10862742 taatttacacccacctaaaaacactaaggtgtaaattagcaagctacacccac 10862794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 43522026 - 43521986
Alignment:
Q  423 gggccatggcccacctcagcccatacaagcctcggccactg 463  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  43522026 gggccatggcccacctcagcccatacaagcctccgccactg 43521986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 593
Target Start/End: Original strand, 44021837 - 44021933
Alignment:
Q  497 gtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttat 593  Q
    |||||| |||||||  |||| ||||||||||| |||||| || | |||| ||||||||||  | || ||||||||||||||||||||| ||| ||||    
T  44021837 gtgtaagttagcaagctacatccacctaaaataattaaggtgcaagttagcaatctacacctatttaattatttacactcatttttataagtattat 44021933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 469 - 511
Target Start/End: Complemental strand, 9792430 - 9792388
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaa 511  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  9792430 taatttacacccacttaaaaatactaaggtgtaaattagcaaa 9792388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 42182725 - 42182766
Alignment:
Q  470 aatttacactcacttaaaaacactaaggtgtaaattagcaaa 511  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  42182725 aatttacacccacctaaaaacactaaggtgtaaattagcaaa 42182766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 473 - 535
Target Start/End: Complemental strand, 6831674 - 6831612
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaag 535  Q
    |||||| ||| ||||||||| |||||| || |||||||  |||||||||||||||| ||||||    
T  6831674 ttacacccacctaaaaacaccaaggtgcaagttagcaagctacacccacctaaaattattaag 6831612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 721
Target Start/End: Complemental strand, 9792296 - 9792237
Alignment:
Q  660 ctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttt 721  Q
    ||||||||||||| ||||||| ||||||||| |||| | ||||||||||||||| |||||||    
T  9792296 ctcatttttataaattttatc-aaattgttt-acacccacctcactaatttacatccacttt 9792237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 749
Target Start/End: Original strand, 13293813 - 13293913
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||||||| ||| ||||||||| |||||| |||||  ||||||||   |||||||||||||||| || |||| || |||||  | |||||||||    
T  13293813 acttgattatttacactcttttttataaattttat-caaat--ttttacacatacctcactaatttacacaca-tttttatcattccagatattgtttcc 13293908  T
Q  745 ttaaa 749  Q
    |||||    
T  13293909 ttaaa 13293913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 627
Target Start/End: Complemental strand, 19494575 - 19494507
Alignment:
Q  558 cacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    |||||||||||||||||| |||||||| ||||||||  ||||| |||||  |||||||| | ||||||||    
T  19494575 cacttgattatttacact-atttttataagttttatgtaattgtttacattcacctcacaagtttacacc 19494507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 42452254 - 42452163
Alignment:
Q  87 agtcaagcaattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagagaga 178  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  42452254 agtcaagcaattacctttccatttggattggaaaaacagagagtgaacaagaaaaagggtttttgttagatattctatgaatgagagagaga 42452163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 87 - 309
Target Start/End: Original strand, 21525990 - 21526215
Alignment:
Q  87 agtcaagcaattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctc----tgaatgagagagagaaggg 182  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||    |||  ||||||||||||||    
T  21525990 agtcaagaaattacatttccatttggattggaaaaacagagagtgaaaaagaaaaagggattttgtttgatcttctctatttgagagagagagagaaggg 21526089  T
Q  183 agtcccggattgagtggtcgacgccggtagtctcgcggtgggaaatcgatgagaatcgacggtgacaccactgtgatttgggttgaagctaatgggttt- 281  Q
    ||| ||||| |||||| | | ||||||  ||| || ||  ||||| || ||||||||||||||||   |||||||||||||||||||| | ||||| ||     
T  21526090 agtgccggagtgagtgcttggcgccggaggtcgcgtggccggaaa-cggtgagaatcgacggtga---cactgtgatttgggttgaaggttatgggattg 21526185  T
Q  282 --tttaggtcgcgttttgaaagagggagaa 309  Q
       |||||||||||||| ||||||||||||    
T  21526186 taattaggtcgcgttttcaaagagggagaa 21526215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 473 - 627
Target Start/End: Original strand, 23657270 - 23657424
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||| ||| |||||| ||||||||| || ||||||| |||| |||||||||||| |||||| || | |||| ||| |||||  |||||||||||||||    
T  23657270 ttacacccacctaaaaatactaaggtgcaagttagcaagttacgcccacctaaaattattaaggtgcaagttagcaacctacatccacttgattatttac 23657369  T
Q  573 actcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    ||||||||| || | ||||| | |||   ||||||| |||||||||| |||||||    
T  23657370 actcattttgataaattttaacaaatattttacaccaacctcactaacttacacc 23657424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 518 - 627
Target Start/End: Complemental strand, 9158888 - 9158779
Alignment:
Q  518 ccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccacctcact 617  Q
    |||||||||| || ||||  ||| |||| |||||||||  ||||||||||| ||||| ||||||||| | ||||||| ||||| |||||| |||||||||    
T  9158888 ccacctaaaaacactaaggggtaagttagcaatctacatccacttgattatatacacccatttttataacttttatcaaattgcttacactcacctcact 9158789  T
Q  618 aatttacacc 627  Q
    ||||||||||    
T  9158788 aatttacacc 9158779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 19976770 - 19976692
Alignment:
Q  95 aattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagaga 176  Q
    |||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  19976770 aattacctttccatttggataggaaaaaca--gagtgaa-aagaaaaagggtttttgtttgatcttttttgaatgagagaga 19976692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 41593745 - 41593667
Alignment:
Q  95 aattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagaga 176  Q
    |||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  41593745 aattacctttccatttggataggaaaaaca--gagtgaa-aagaaaaagggtttttgtttgatcttttttgaatgagagaga 41593667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 532 - 641
Target Start/End: Complemental strand, 2658635 - 2658526
Alignment:
Q  532 taagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacaccagtt 631  Q
    |||| |||| |||| ||| |||||| ||||||||||| |||||||||||| || | ||||||| ||||| |||| ||| |||||||||||||||||| ||    
T  2658635 taaggtgtaagttagcaacctacacccacttgattatatacactcattttaataaattttatcaaattgtttacccccgcctcactaatttacaccactt 2658536  T
Q  632 ttattattcc 641  Q
    | || |||||    
T  2658535 tcatcattcc 2658526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 750
Target Start/End: Original strand, 1398162 - 1398266
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||||||  ||||||||||| | |||| | || ||||||| |||| | |||||||||||||||| |||||||||  ||||| || |||||||||    
T  1398162 acttgattatttaaactcatttttatgaattttgttcagattgttt-acacccacctcactaatttacactcacttttcacaattccaaatattgtttcc 1398260  T
Q  745 ttaaaa 750  Q
    ||||||    
T  1398261 ttaaaa 1398266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 750
Target Start/End: Complemental strand, 9158847 - 9158745
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||| ||| | ||||||||||| ||||||| |||||| || |||||| |||||||||||||||||||| |||||| ||||  || |||||||||    
T  9158847 acttgattatatacacccatttttataacttttatc-aaattgctt-acactcacctcactaatttacacccac-tttcatcattctaaatattgtttcc 9158751  T
Q  745 ttaaaa 750  Q
    ||||||    
T  9158750 ttaaaa 9158745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 17174961 - 17175039
Alignment:
Q  90 caagcaattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaat 168  Q
    |||| ||||||||||| ||| |||||| ||||| | ||||| || ||||||||| ||||||||||||| ||||||||||    
T  17174961 caagaaattacctttcaattaggattgaaaaaatagagagtcaaaaagaaaaagtgtttttgtttgatcttctctgaat 17175039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 626
Target Start/End: Original strand, 1398161 - 1398230
Alignment:
Q  558 cacttgattatttacactcatttttattagttttatcca-attggttacacccacctcactaatttacac 626  Q
    |||||||||||||| |||||||||||| | |||| | || |||| |||||||||||||||||||||||||    
T  1398161 cacttgattatttaaactcatttttatgaattttgttcagattgtttacacccacctcactaatttacac 1398230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 41593455 - 41593414
Alignment:
Q  423 gggccatggcccacctcagcccatacaagcctcggccactga 464  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  41593455 gggccatggcccacctcagcccatacaagcctccgccactga 41593414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 584
Target Start/End: Original strand, 33473424 - 33473496
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttat 584  Q
    |||||||||||||||| || ||| ||||| |||||||| |||||| ||||| ||||| |||||| ||||||||    
T  33473424 ttacacccacctaaaaacactaacatgtaagttaacaacctacacccacttcattatatacactaatttttat 33473496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 521
Target Start/End: Complemental strand, 33473861 - 33473809
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccac 521  Q
    |||||||||  ||| ||||||||||||||||||||||||||| ||||||||||    
T  33473861 taatttacatccacctaaaaacactaaggtgtaaattagcaagttacacccac 33473809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 645 - 747
Target Start/End: Complemental strand, 2658608 - 2658510
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||| ||| |||||||| |||| ||||||| ||||||||| || | ||||||||||||||||| |||| |||||| ||||| || |||||||||    
T  2658608 acttgattatatacactcattttaataaattttatc-aaattgttt-acccccgcctcactaatttaca-ccac-tttcatcattccaaatattgtttcc 2658513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 19976475 - 19976437
Alignment:
Q  426 ccatggcccacctcagcccatacaagcctcggccactga 464  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  19976475 ccatggcccacctcagcccatacaagcctccgccactga 19976437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 43439326 - 43439367
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaa 510  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  43439326 taatttacacccacctaaaaacactaaggtgtaaattagcaa 43439367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 469 - 521
Target Start/End: Original strand, 2658304 - 2658355
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccac 521  Q
    |||||||||| |||| ||||||||||||||||||||||||||  |||||||||    
T  2658304 taatttacacccact-aaaaacactaaggtgtaaattagcaagctacacccac 2658355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 42452134 - 42452082
Alignment:
Q  169 gagagagagaagggagtcccggattgagtggtcgacgccggtagtctcgcggt 221  Q
    ||||||||||||||||| ||||| |||||||||| ||||||  ||||||||||    
T  42452134 gagagagagaagggagtgccggagtgagtggtcggcgccggaggtctcgcggt 42452082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 582
Target Start/End: Complemental strand, 9964174 - 9964076
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacaccc-acctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttt 582  Q
    |||||||||||||||| || |||| ||  ||||||| | ||||||| ||||||||| | ||||| |  ||||||  ||||||||||||||||||||||||    
T  9964174 taaaaacactaaggtgcaagttagaaagctacaccccaactaaaattattaagatgcaagttaatac-ctacacctacttgattatttacactcattttt 9964076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 24623519 - 24623469
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacc 518  Q
    |||||||| || ||| ||||||||||| ||||||||||||||| |||||||    
T  24623519 ttaatttatacccacctaaaaacactatggtgtaaattagcaagttacacc 24623469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 534
Target Start/End: Complemental strand, 11486702 - 11486637
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaa 534  Q
    |||||||||  ||| |||||||||||||||| || |||||||  || ||||||||||||| |||||    
T  11486702 taatttacatccacctaaaaacactaaggtgcaagttagcaagctaaacccacctaaaattattaa 11486637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 750
Target Start/End: Original strand, 23102670 - 23102718
Alignment:
Q  701 tcactaatttacacccacttttcattattcccaaaattgtttccttaaaa 750  Q
    |||||||||||||||||| |||||| ||||| || |||||||||||||||    
T  23102670 tcactaatttacacccac-tttcatcattccaaatattgtttccttaaaa 23102718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 581
Target Start/End: Complemental strand, 24791136 - 24791087
Alignment:
Q  532 taagatgtatgttaacaatctacactcacttgattatttacactcatttt 581  Q
    |||| |||| |||| ||| |||||| ||||||||||||||||||||||||    
T  24791136 taaggtgtaagttagcaacctacacccacttgattatttacactcatttt 24791087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 521
Target Start/End: Complemental strand, 43439778 - 43439725
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccac 521  Q
    |||||||||||  || |||||||||| |||| ||||||||||| ||||||||||    
T  43439778 ttaatttacacctacctaaaaacactgaggtataaattagcaagttacacccac 43439725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 468 - 627
Target Start/End: Complemental strand, 10142961 - 10142802
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgatta 567  Q
    ||||||||||| ||   ||||| ||||||||||||||||||||| |||| |||| ||||||||||||| |||| |||||||| |||||| ||||||||||    
T  10142961 ttaatttacacccatcgaaaaatactaaggtgtaaattagcaaactacaaccacttaaaatcattaaggtgtaagttaacaacctacacccacttgatta 10142862  T
Q  568 tttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    ||||||||  ||||||| ||||||||| ||||| || |||  ||||||||||||||||||    
T  10142861 tttacactattttttataagttttatcaaattgtttgcacatacctcactaatttacacc 10142802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 469 - 626
Target Start/End: Original strand, 10142160 - 10142317
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||  |||||| ||||||||||||||||||||  ||||||||| ||||||||||||| |||| |||| ||| ||||||  ||||||||||    
T  10142160 taatttacacccatctaaaaatactaaggtgtaaattagcaagctacacccacttaaaatcattaaggtgtaagttagcaacctacacctacttgattat 10142259  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
    |||||||  ||||||| ||||||||  ||||  |||||||||||||| ||||||||||    
T  10142260 ttacactattttttataagttttatgaaattttttacacccacctcaataatttacac 10142317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 490 - 626
Target Start/End: Original strand, 14148880 - 14149016
Alignment:
Q  490 cactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagtt 589  Q
    ||||||||||| |||||||||  |||||||||||||||  | |||| |||| |||| ||| |||||| ||||||||||| ||||||||||||||| | ||    
T  14148880 cactaaggtgttaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacactcatttttataaatt 14148979  T
Q  590 ttatccaattggttacacccacctcactaatttacac 626  Q
    ||||| ||||| ||||| |||||| ||||||||||||    
T  14148980 ttatcaaattgtttacaaccaccttactaatttacac 14149016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 468 - 625
Target Start/End: Complemental strand, 39058211 - 39058055
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgatta 567  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||  | || ||||||||||  | |||| |||| |||| |||  ||||| ||||||||||    
T  39058211 ttaatttacacccacctaaaa-cactaaggtgtaaattagcaagctgcatccacctaaaaatactaaggtgtaagttagcaacttacacccacttgatta 39058113  T
Q  568 tttacactcatttttattagttttatccaattggttacacccacctcactaatttaca 625  Q
    | ||||||||||||||| | ||||||| ||||| ||||| |||||| |||||||||||    
T  39058112 tatacactcatttttataaattttatcaaattgtttacaaccaccttactaatttaca 39058055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 469 - 626
Target Start/End: Complemental strand, 18014571 - 18014415
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||  | |||| |||| |||| ||| |||||| |||||||||||    
T  18014571 taatttacacccacctaaat-cactaaggtgtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattat 18014473  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
     |||| | |||||||| | ||||||| ||||| ||||| ||| || ||||||||||||    
T  18014472 atacatttatttttataaattttatcaaattgtttacaaccatcttactaatttacac 18014415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 512 - 625
Target Start/End: Original strand, 36896618 - 36896731
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccac 611  Q
    |||||| ||||||||| ||||||| ||||||||| ||| ||||||||| ||||| ||  |||||||||||||| | ||||||| ||||| |||||||| |    
T  36896618 ttacactcacctaaaaacattaaggtgtatgttagcaacctacactcatttgataatacacactcatttttataaattttatcaaattgtttacaccctc 36896717  T
Q  612 ctcactaatttaca 625  Q
    ||||||||||||||    
T  36896718 ctcactaatttaca 36896731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 23124185 - 23124265
Alignment:
Q  95 aattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagaga 176  Q
    |||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  23124185 aattacctttccatttggataggaaaaatagagagtgaa-aagaaaaagggtttttgtttgatcttttctgaatgagagaga 23124265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 498 - 627
Target Start/End: Complemental strand, 26637721 - 26637592
Alignment:
Q  498 tgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaa 597  Q
    ||||||||||||| ||||||||| ||||||  | |||| || | ||||  || |||||| |||||||||||||| |||||||||||| | ||||| | ||    
T  26637721 tgtaaattagcaagttacacccaactaaaaatactaaggtgcaagttagtaacctacacccacttgattatttatactcatttttataaattttaacaaa 26637622  T
Q  598 ttggttacacccacctcactaatttacacc 627  Q
    ||| |||||| |||||||||||||||||||    
T  26637621 ttgtttacactcacctcactaatttacacc 26637592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 512 - 627
Target Start/End: Complemental strand, 18934666 - 18934551
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccac 611  Q
    |||||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||||| | | |||||  |  |||||| ||||  ||| |  |||    
T  18934666 ttacacccacctaaaatcattaaggtgtaagttaacaacatacactcacttgattatttacaattacttttaaaaaatttatcaaattatttatatacac 18934567  T
Q  612 ctcactaatttacacc 627  Q
    ||||||||||||||||    
T  18934566 ctcactaatttacacc 18934551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 14006614 - 14006536
Alignment:
Q  95 aattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagaga 176  Q
    |||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  14006614 aattacctttccatttggataggaaaaaca--gagtgaa-aagaaaaagggtttttgtttgatcttttttgaatgagagaga 14006536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 584
Target Start/End: Original strand, 24073513 - 24073624
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    ||||||| || ||||| ||  ||| ||||| |||| ||||||||||||   ||||| |||||| ||||  |||||||||||||  |||||||||||||||    
T  24073513 ttacactaacctaaaaccatcaagatgtaagttagtaaattacacccattgaaaattattaaggtgtaaattaacaatctacatccacttgattatttac 24073612  T
Q  573 actcatttttat 584  Q
    ||||||||||||    
T  24073613 actcatttttat 24073624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 469 - 567
Target Start/End: Complemental strand, 5999300 - 5999202
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgatta 567  Q
    |||||||||| |||||||||| ||||||||| |||||| |||  | ||| ||||||||||||||||  |||| ||||  || |||||||||||||||||    
T  5999300 taatttacacccacttaaaaatactaaggtgaaaattaacaagctgcacacacctaaaatcattaacgtgtaagttattaacctacactcacttgatta 5999202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 750
Target Start/End: Complemental strand, 26637660 - 26637558
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||||||  ||||||||||||| ||||| | ||||||||| |||||| |||||||||||||||||||| |||||| ||| | || ||||||| |    
T  26637660 acttgattatttatactcatttttataaattttaac-aaattgttt-acactcacctcactaatttacacccac-tttcatcatttcaaatattgtttac 26637564  T
Q  745 ttaaaa 750  Q
    ||||||    
T  26637563 ttaaaa 26637558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 19321073 - 19320989
Alignment:
Q  321 aacgtgtaagagaggaaggggaaaaggctggaaatgcgaagtgggtcagttgaaaataataaaataagttgagggtatttttgta 405  Q
    ||||||||| ||||||||||||||||||| |||||||   ||||| || ||||||| ||||||  ||| ||||||||||||||||    
T  19321073 aacgtgtaatagaggaaggggaaaaggctagaaatgctgggtgggccatttgaaaaaaataaataaagctgagggtatttttgta 19320989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 469 - 599
Target Start/End: Complemental strand, 4927737 - 4927608
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||||||  |||||| |||| |  |||||||| |||  |||||| ||||| ||| ||||||  ||| |||||||| |||||| |||||||||||    
T  4927737 taatttacactcatctaaaaatactatga-gtaaattaccaagctacacctacctacaatgattaaggagtaagttaacaacctacacacacttgattat 4927639  T
Q  569 ttacactcatttttattagttttatccaatt 599  Q
    |||||  || |||||| ||||||||| ||||    
T  4927638 ttacatacacttttataagttttatcaaatt 4927608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 14006291 - 14006251
Alignment:
Q  423 gggccatggcccacctcagcccatacaagcctcggccactg 463  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  14006291 gggccatggcccacctcagcccatacaagcctccgccactg 14006251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 23124481 - 23124521
Alignment:
Q  423 gggccatggcccacctcagcccatacaagcctcggccactg 463  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  23124481 gggccatggcccacctcagcccatacaagcctccgccactg 23124521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 645 - 721
Target Start/End: Complemental strand, 10142870 - 10142796
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttt 721  Q
    |||||||||||||| ||  ||||||||||||||||| |||||||||  |||   |||||||||||||||||||||||    
T  10142870 acttgattatttacactattttttataagttttatc-aaattgtttg-cacatacctcactaatttacacccacttt 10142796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 584
Target Start/End: Original strand, 12383504 - 12383608
Alignment:
Q  480 cacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatt 579  Q
    |||||||||||| ||||||| || ||| |||  |||||||||||||||  |||||| || | |||  ||| |||||| |||||||||||||| || | ||    
T  12383504 cacttaaaaacattaaggtgcaatttaacaagctacacccacctaaaactattaaggtgcaagttggcaacctacacccacttgattatttagacacgtt 12383603  T
Q  580 tttat 584  Q
    |||||    
T  12383604 tttat 12383608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 750
Target Start/End: Original strand, 36896680 - 36896767
Alignment:
Q  660 ctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttccttaaaa 750  Q
    ||||||||||||| ||||||| ||||||||| |||| | ||||||||||||||| |||| |||||| ||||  || ||||||| |||||||    
T  36896680 ctcatttttataaattttatc-aaattgttt-acaccctcctcactaatttacatccac-tttcatcattctaaatattgttttcttaaaa 36896767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 722
Target Start/End: Original strand, 10142250 - 10142325
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccactttt 722  Q
    |||||||||||||| ||  ||||||||||||||||  ||||| |||||||| | ||||| |||||||||| |||||||    
T  10142250 acttgattatttacactattttttataagttttat-gaaatt-ttttacacccacctcaataatttacactcactttt 10142325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 19320949 - 19320908
Alignment:
Q  423 gggccatggcccacctcagcccatacaagcctcggccactga 464  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||    
T  19320949 gggccgtggcccacctcagcccatataagcctccgccactga 19320908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 484 - 626
Target Start/End: Original strand, 30805905 - 30806047
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttta 583  Q
    |||||| ||||||||||||||||||||||| |||||||||| |||||||||  |||| |||| ||| |||||  ||||||||||||||||||||||||||    
T  30805905 taaaaatactaaggtgtaaattagcaaattccacccacctagaatcattaaagtgtaagttagcaacctacatccacttgattatttacactcattttta 30806004  T
Q  584 ttagttttatccaattggttacacccacctcactaatttacac 626  Q
    | | ||||||| ||||  ||||||| | |||||||||||||||    
T  30806005 taaattttatcaaattatttacacctatctcactaatttacac 30806047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 469 - 626
Target Start/End: Complemental strand, 3469348 - 3469192
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||  | |||| |||| |||| ||| |||||| |||||||||||    
T  3469348 taatttacacccacctaaat-cactaaggtgtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattat 3469250  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
     ||||||||||||||| | ||||||| ||||| ||||| |||||| ||||||||||||    
T  3469249 atacactcatttttataaattttatcaaattgtttacaaccaccttactaatttacac 3469192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 626
Target Start/End: Original strand, 42906772 - 42906928
Alignment:
Q  469 taatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattat 568  Q
    |||||||||| ||| ||||  |||||||||||||||||| ||  |||||||||||||||  | |||| |||| |||| ||| |||||| |||||||||||    
T  42906772 taatttacacccacctaaat-cactaaggtgtaaattagtaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattat 42906870  T
Q  569 ttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
     ||||||||||||||| | ||||||| ||||| || || |||||| ||||||||||||    
T  42906871 atacactcatttttataaattttatcaaattgtttgcaaccaccttactaatttacac 42906928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 468 - 624
Target Start/End: Original strand, 6148760 - 6148915
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgatta 567  Q
    |||| |||||| || |||||||||||||| |||||||||||||  | || |||||||| ||||||||| |||| |||| |||  ||||| ||||||| ||    
T  6148760 ttaacttacacccatttaaaaacactaag-tgtaaattagcaagctgcatccacctaagatcattaaggtgtaagttagcaacttacacccacttgaata 6148858  T
Q  568 tttacactcatttttattagttttatccaattggttacacccacctcactaatttac 624  Q
    |||  |||||||||| | ||||||||| ||||| ||||||| | ||||| |||||||    
T  6148859 tttttactcatttttgtaagttttatctaattgtttacacctatctcacaaatttac 6148915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 473 - 593
Target Start/End: Original strand, 8624855 - 8624975
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||||||| |||||||||||||||| || |||| ||| ||||||||| |||||| |||||| || |  ||| ||  |||||| |||||||||||||||    
T  8624855 ttacactcacctaaaaacactaaggtgcaagttagtaaactacacccacataaaattattaaggtgcaaattagcatcctacacccacttgattatttac 8624954  T
Q  573 actcatttttattagttttat 593  Q
    |||||||||||| ||| ||||    
T  8624955 actcatttttataagtattat 8624975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 473 - 593
Target Start/End: Original strand, 4203055 - 4203178
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatg---ttaacaatctacactcacttgattatt 569  Q
    |||||||||| |||||| ||||||||| ||||||||||  ||||||||||||| || |||||| || | |   ||| ||| |||||| ||||||||||||    
T  4203055 ttacactcacctaaaaatactaaggtgcaaattagcaagctacacccacctaatattattaaggtgcaagtaattagcaacctacacccacttgattatt 4203154  T
Q  570 tacactcatttttattagttttat 593  Q
    ||||||||||||||| ||| ||||    
T  4203155 tacactcatttttataagtattat 4203178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 12870033 - 12870111
Alignment:
Q  95 aattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagaga 176  Q
    |||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  12870033 aattacctttccatttggataggaaaaaca--gagtgaa-aagaaaaagggtttttgtttgatcttttttgaatgagagaga 12870111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 607
Target Start/End: Original strand, 1271224 - 1271347
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaat-tacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttt 582  Q
    |||||||||||| | |||||||||||||  |||| || || ||||| |||||| || | |||||||| ||| || |||| ||||||||||||||||||||    
T  1271224 taaaaacactaatgagtaaattagcaaagctacatcc-ccaaaaattattaaggtgcaagttaacaacctatacccactagattatttacactcattttt 1271322  T
Q  583 attagttttatccaattggttacac 607  Q
    || ||||||||| ||||| ||||||    
T  1271323 ataagttttatcaaattgtttacac 1271347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 593
Target Start/End: Original strand, 9478963 - 9479083
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||| ||| |||||||||||||||| || |||||||  |||||||||||||||| |||||| || | |||| ||| || ||| || || |||||||||    
T  9478963 ttacacccacctaaaaacactaaggtgcaagttagcaagctacacccacctaaaattattaaggtgcaagttagcaaccttcacccattttattatttac 9479062  T
Q  573 actcatttttattagttttat 593  Q
    ||| |||||||| ||| ||||    
T  9479063 acttatttttataagtattat 9479083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 473 - 593
Target Start/End: Complemental strand, 42443563 - 42443443
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||| ||| |||||||| |||| || || |||||||| ||| | ||||||||||  ||||| || | |||||||| ||| ||  ||||||||||||||    
T  42443563 ttacacccacctaaaaacattaagatgcaagttagcaaactacgctcacctaaaattgttaaggtgcaagttaacaacctatacctacttgattatttac 42443464  T
Q  573 actcatttttattagttttat 593  Q
    |||||||||||| ||| ||||    
T  42443463 actcatttttataagtattat 42443443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 593
Target Start/End: Complemental strand, 14124559 - 14124449
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaa-tcattaagatgtatgttaacaatctacactcacttgattatttacactcattttt 582  Q
    |||||||||||| ||| || ||||||| |||||| ||||||||| | |||||| || | |||| ||| ||||||  | | ||||||||||||||||||||    
T  14124559 taaaaacactaaagtgcaagttagcaagttacactcacctaaaatttattaaggtgcaagttagcaacctacacctattcgattatttacactcattttt 14124460  T
Q  583 attagttttat 593  Q
    || ||| ||||    
T  14124459 ataagtattat 14124449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 423 - 455
Target Start/End: Original strand, 12870356 - 12870388
Alignment:
Q  423 gggccatggcccacctcagcccatacaagcctc 455  Q
    |||||||||||||||||||||||||||||||||    
T  12870356 gggccatggcccacctcagcccatacaagcctc 12870388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 584
Target Start/End: Complemental strand, 13475019 - 13474920
Alignment:
Q  485 aaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttat 584  Q
    ||||||||| ||||| || |||||||  |||| | ||||||||| |||||| || | |||| |||  ||||   ||||||||||||||||||||||||||    
T  13475019 aaaaacacttaggtgcaagttagcaagctacatctacctaaaattattaaggtgcaagttagcaacatacatctacttgattatttacactcatttttat 13474920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 473 - 535
Target Start/End: Original strand, 1565805 - 1565866
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaag 535  Q
    |||||| |||||||||||||||||||| || |||||||  |||||||| ||||||| ||||||    
T  1565805 ttacacccacttaaaaacactaaggtgcaagttagcaagctacaccca-ctaaaattattaag 1565866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 690
Target Start/End: Original strand, 1271303 - 1271343
Alignment:
Q  649 gattatttacgctcatttttataagttttatccaaattgttt 690  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  1271303 gattatttacactcatttttataagttttat-caaattgttt 1271343  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 750
Target Start/End: Original strand, 1565884 - 1565932
Alignment:
Q  701 tcactaatttacacccacttttcattattcccaaaattgtttccttaaaa 750  Q
    |||||||||||||||||| |||||| ||||| || |||||||||||||||    
T  1565884 tcactaatttacacccac-tttcatcattccaaatattgtttccttaaaa 1565932  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 750
Target Start/End: Original strand, 8624997 - 8625045
Alignment:
Q  701 tcactaatttacacccacttttcattattcccaaaattgtttccttaaaa 750  Q
    |||||||||||||| |||||| ||||||||| || |||||||||||||||    
T  8624997 tcactaatttacactcacttt-cattattccaaatattgtttccttaaaa 8625045  T

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Target: scaffold0538 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 493 - 626
Target Start/End: Complemental strand, 8621 - 8488
Alignment:
Q  493 taaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttattagtttta 592  Q
    ||||||| || |||||||  ||||| || || ||||||||||| || | |||| |||  ||||| ||||||||||||||||||||| ||||| |||||||    
T  8621 taaggtgcaagttagcaagctacactcatcttaaatcattaaggtgcaagttagcaacttacacccacttgattatttacactcatgtttataagtttta 8522  T
Q  593 tccaattggttacacccacctcactaatttacac 626  Q
    || ||||| |||||| ||||||||||||||||||    
T  8521 tcaaattgtttacactcacctcactaatttacac 8488  T

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Target: scaffold0538; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 626
Target Start/End: Complemental strand, 4091 - 4023
Alignment:
Q  558 cacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacac 626  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||| |||||| ||||||||||||||||||    
T  4091 cacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctcactaatttacac 4023  T

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Target: scaffold0538; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 645 - 750
Target Start/End: Complemental strand, 4090 - 3989
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||  || ||| | || |||||||||    
T  4090 acttgattatttacactcatgtttataagttttat-caaattg-tttacactcacctcactaatttacactcacttt--atcatttcaaatattgtttcc 3995  T
Q  745 ttaaaa 750  Q
    ||||||    
T  3994 ttaaaa 3989  T

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Target: scaffold0538; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 645 - 721
Target Start/End: Complemental strand, 8555 - 8481
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttt 721  Q
    |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||    
T  8555 acttgattatttacactcatgtttataagttttat-caaattg-tttacactcacctcactaatttacactcacttt 8481  T

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Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 486 - 627
Target Start/End: Original strand, 31730375 - 31730516
Alignment:
Q  486 aaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttatt 585  Q
    |||||||||||||| || |||||||| |||||||||||||||| ||||| ||| | |||| |||  ||||  |||||||||||||||||||||||||||     
T  31730375 aaaacactaaggtgcaagttagcaaactacacccacctaaaattattaaaatgcaagttatcaacttacatccacttgattatttacactcatttttata 31730474  T
Q  586 agttttatccaattggttacacccacctcactaatttacacc 627  Q
    | ||||| | |||   ||  ||||||||||||||||||||||    
T  31730475 acttttaacaaataatttgtacccacctcactaatttacacc 31730516  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 484 - 580
Target Start/End: Original strand, 2925905 - 2926001
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattt 580  Q
    ||||||||||||| |||||||||||||  |||| |||||||||||||||||| |||| |||| ||| |||||| ||||| ||||||| |||||||||    
T  2925905 taaaaacactaagatgtaaattagcaagctacatccacctaaaatcattaaggtgtaagttagcaacctacacccacttaattatttgcactcattt 2926001  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 484 - 584
Target Start/End: Complemental strand, 18053732 - 18053632
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttta 583  Q
    |||||||||||||||| || |||||||  |||||||||||||||| |||||| || | |||| |||  ||||  ||||||||||||||||||||||||||    
T  18053732 taaaaacactaaggtgcaagttagcaagctacacccacctaaaattattaaggtgcaagttagcaacttacatccacttgattatttacactcattttta 18053633  T
Q  584 t 584  Q
    |    
T  18053632 t 18053632  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 483 - 626
Target Start/End: Original strand, 24081601 - 24081745
Alignment:
Q  483 ttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttt 582  Q
    |||||||||||||| ||||||||||| |  ||||||||| |||||  | | || |||| ||||  || |||||| ||||||||||| |||||||||||||    
T  24081601 ttaaaaacactaagttgtaaattagcgagctacacccacttaaaaaaactcaggtgtacgttagtaacctacacccacttgattatatacactcattttt 24081700  T
Q  583 attagttttatccaa-ttggttacacccacctcactaatttacac 626  Q
    || | ||||||| || ||  |||||| ||||||||||||||||||    
T  24081701 atcaattttatcaaatttttttacactcacctcactaatttacac 24081745  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 17912360 - 17912448
Alignment:
Q  90 caagcaattacctttccatttggattggaaaaacaaagagtgaacaagaaaaagggtttttgtttgatattctctgaatgagagagaga 178  Q
    |||| ||||||||||| ||| |||||| ||||| | ||||| || ||||||||| |||||| |||||| |||||||||||| |||||||    
T  17912360 caagaaattacctttcaattaggattgaaaaaatagagagtcaaaaagaaaaagtgtttttatttgatcttctctgaatgacagagaga 17912448  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 484 - 584
Target Start/End: Original strand, 20468423 - 20468523
Alignment:
Q  484 taaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcattttta 583  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||| |||||  || | ||||  | | ||||| ||||| |||||||||||| |||||||    
T  20468423 taaaaacactaagatgtaagttagcaagttacacccacctaaaattattaaagtgcaagttagaattatacacccacttaattatttacacttattttta 20468522  T
Q  584 t 584  Q
    |    
T  20468523 t 20468523  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 645 - 719
Target Start/End: Original strand, 24081677 - 24081750
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccact 719  Q
    |||||||||| ||| ||||||||||| | ||||||| ||||| |||||||||| |||||||||||||||| ||||    
T  24081677 acttgattatatacactcatttttatcaattttatc-aaatttttttacactcacctcactaatttacactcact 24081750  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 627
Target Start/End: Complemental strand, 33483607 - 33483538
Alignment:
Q  558 cacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    ||||| ||||| |||||| | |||||| | ||||||| ||||| ||||||||||||||||||||||||||    
T  33483607 cacttcattatatacactaaattttataaattttatcaaattgtttacacccacctcactaatttacacc 33483538  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 665 - 746
Target Start/End: Complemental strand, 33483586 - 33483508
Alignment:
Q  665 ttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcctt 746  Q
    |||||||| ||||||| ||||||||| |||| | |||||||||||||||||||| |||||| ||||| || |||||||||||    
T  33483586 ttttataaattttatc-aaattgttt-acacccacctcactaatttacacccac-tttcatcattccaaatattgtttcctt 33483508  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 584
Target Start/End: Original strand, 6851845 - 6851887
Alignment:
Q  542 gttaacaatctacactcacttgattatttacactcatttttat 584  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||    
T  6851845 gttagcaacctacactcacttgattatttacacttatttttat 6851887  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 521
Target Start/End: Original strand, 33483355 - 33483408
Alignment:
Q  468 ttaatttacactcacttaaaaacactaaggtgtaaattagcaaattacacccac 521  Q
    ||||||||||| ||| ||||||||||||||| ||||||||  || |||||||||    
T  33483355 ttaatttacacccacctaaaaacactaaggtataaattagacaactacacccac 33483408  T

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Target: scaffold0002 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 548 - 623
Target Start/End: Complemental strand, 452970 - 452895
Alignment:
Q  548 aatctacactcacttgattatttacactcatttttattagttttatccaattggttacacccacctcactaattta 623  Q
    ||||||||| ||||||||||| || |||||||||||| | ||||||| ||||| ||||||||||||||||||||||    
T  452970 aatctacacccacttgattatataaactcatttttataaattttatcaaattgtttacacccacctcactaattta 452895  T

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Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 750
Target Start/End: Complemental strand, 452959 - 452857
Alignment:
Q  645 acttgattatttacgctcatttttataagttttatccaaattgttttacactcgcctcactaatttacacccacttttcattattcccaaaattgtttcc 744  Q
    |||||||||| ||  ||||||||||||| ||||||| ||||||||| |||| | ||||||||||||| ||||| ||||||| ||||| || |||||||||    
T  452959 acttgattatataaactcatttttataaattttatc-aaattgttt-acacccacctcactaatttaaaccca-ttttcatcattccaaatattgtttcc 452863  T
Q  745 ttaaaa 750  Q
    ||||||    
T  452862 ttaaaa 452857  T

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Target: scaffold0778 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 627
Target Start/End: Original strand, 3197 - 3351
Alignment:
Q  473 ttacactcacttaaaaacactaaggtgtaaattagcaaattacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttac 572  Q
    |||||| ||| |||||| ||||| ||| || |||||||  ||||  |||||||| |  | ||| || | |||| ||| ||| || |||||||||||||||    
T  3197 ttacacccacctaaaaaaactaatgtgcaagttagcaagctacattcacctaaatttttaaaggtgcaagttagcaacctatacccacttgattatttac 3296  T
Q  573 actcatttttattagttttatccaattggttacacccacctcactaatttacacc 627  Q
    |||||||||||| | ||||| | |||   || |||||||||||||||||||||||    
T  3297 actcatttttataatttttaacaaataatttgcacccacctcactaatttacacc 3351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 35324 - 35284
Alignment:
Q  423 gggccatggcccacctcagcccatacaagcctcggccactg 463  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  35324 gggccatggcccacctcagcccatacaagcctccgccactg 35284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 584
Target Start/End: Complemental strand, 1656 - 1584
Alignment:
Q  512 ttacacccacctaaaatcattaagatgtatgttaacaatctacactcacttgattatttacactcatttttat 584  Q
    ||||||| |||||||| || |||| || | |||| |||  ||||| |||||||||||||||||||||||||||    
T  1656 ttacacctacctaaaaacactaaggtgcaagttagcaacatacacccacttgattatttacactcatttttat 1584  T

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