View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4777-Insertion-5 (Length: 723)

Name: NF4777-Insertion-5
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4777-Insertion-5
NF4777-Insertion-5
[»] chr7 (3 HSPs)
chr7 (503-723)||(16358318-16358540)
chr7 (251-426)||(16358065-16358241)
chr7 (8-151)||(16357816-16357959)
[»] chr8 (3 HSPs)
chr8 (8-97)||(505541-505630)
chr8 (8-118)||(4268654-4268764)
chr8 (63-118)||(9776593-9776648)
[»] chr2 (2 HSPs)
chr2 (13-82)||(36077744-36077813)
chr2 (9-118)||(43561807-43561916)
[»] chr4 (1 HSPs)
chr4 (11-142)||(41521670-41521801)
[»] chr6 (2 HSPs)
chr6 (36-142)||(33589180-33589286)
chr6 (33-142)||(33602299-33602408)
[»] chr3 (1 HSPs)
chr3 (11-118)||(51237916-51238023)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 5e-92; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 503 - 723
Target Start/End: Original strand, 16358318 - 16358540
Alignment:
Q  503 ttaagggaatataaaacatgggctccagaaggtaacaattcagctactttgtttcccatgttgaaattgaggagcattgcctttagatttagatgtacta 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16358318 ttaagggaatataaaacatgggctccagaaggtaacaattcagctactttgtttcccatgttgaaattgaggagcattgcctttagatttagatgtacta 16358417  T
Q  603 tat--aaaagataaatggatgctaatgcnnnnnnnnnnnngaggtctcttgtcaatatacgtattccctatgtttcacatgttggtcctactttttaggg 700  Q
    |||  |||||||||||||||||||||||            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16358418 tataaaaaagataaatggatgctaatgctttttattttttgaggtctcttatcaatatacgtattccctatgtttcacatgttggtcctactttttaggg 16358517  T
Q  701 actaaattcttttacacacatta 723  Q
    |||||||||||||||||||||||    
T  16358518 actaaattcttttacacacatta 16358540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 251 - 426
Target Start/End: Original strand, 16358065 - 16358241
Alignment:
Q  251 gttagaagatgttggtgttgat---gaggatgtgctaaagaagttttcattagcatcattttccatgttttcctaagttagggggttatgattagattta 347  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16358065 gttagaagatgttggtgttgatgatgaggatgtgctaaagaagttttcattagcatcattttccatgttttcctaagttagggggttatgattagattta 16358164  T
Q  348 gagaggtgtatatagagaggaagaatgagtgtggaaggtgcataaaaatagagtggtgtgtttgtattttatgattctc 426  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16358165 gagaggtg--tatagagaggaagaatgagtgtggaaggtgcataaaaatagagtggagtgtttgtattttatgattctc 16358241  T

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Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 16357816 - 16357959
Alignment:
Q  8 taaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16357816 taaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacc 16357915  T
Q  108 cattttccccatgctctcattcttacacctctatatgtagggtg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16357916 cattttccccatgctctcattcttacacctctatatgtagggtg 16357959  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 505541 - 505630
Alignment:
Q  8 taaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaat 97  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||    
T  505541 taaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattcttgattttttctttggctcacgaat 505630  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 4268764 - 4268654
Alignment:
Q  8 taaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacc 107  Q
    |||||| |||||||| || ||||||||||||||||| | ||| | | ||||||| ||||| |||||||| || || | ||| || || ||||||||||||    
T  4268764 taaagctgctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcagatacc 4268665  T
Q  108 cattttcccca 118  Q
    |||||||||||    
T  4268664 cattttcccca 4268654  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 9776593 - 9776648
Alignment:
Q  63 agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca 118  Q
    ||||||||||||||||| ||||||||||| | ||| || || ||||||||||||||    
T  9776593 agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca 9776648  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 36077744 - 36077813
Alignment:
Q  13 cagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctt 82  Q
    ||||||||||||| ||| ||||||||||||| | ||||||||| ||||| |||||||||||||| |||||    
T  36077744 cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgatttctt 36077813  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 43561807 - 43561916
Alignment:
Q  9 aaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagataccc 108  Q
    |||||||| |||||||| |||||||||||||||||||  |||| ||| ||||||||||| |||| ||| || || |  || || || ||||| |||||||    
T  43561807 aaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttccgataccc 43561906  T
Q  109 attttcccca 118  Q
    ||||||||||    
T  43561907 attttcccca 43561916  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 41521801 - 41521670
Alignment:
Q  11 agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccat 110  Q
    |||||| ||||||||||||||||| ||||| ||||  || ||  | ||||| ||||| |||||||| || ||||||||||| | ||| || |||||||||    
T  41521801 agcagccacatcatgagctctagcagccatatcaggagttggaaaagttccgagccaaattcttgatttttttcttggctctctaatctctgatacccat 41521702  T
Q  111 tttccccatgctctcattcttacacctctata 142  Q
    || ||||||   | ||||||||| ||||||||    
T  41521701 ttgccccattgacgcattcttactcctctata 41521670  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 33589286 - 33589180
Alignment:
Q  36 gccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacac 135  Q
    ||||||||||| ||||  |||||||||||||| ||||     ||||||| ||| ||||| ||||| ||||||||||||||||||| || |||||| || |    
T  33589286 gccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgttcgcattctaactc 33589187  T
Q  136 ctctata 142  Q
    |||||||    
T  33589186 ctctata 33589180  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 33602408 - 33602299
Alignment:
Q  33 gctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattctta 132  Q
    |||||||||||||| || | | ||||||| ||||| ||||     ||||||| ||| || || |||||||| |||||||||||||||| || ||||||||    
T  33602408 gctgccatttcagcggttgcgaatgttcctagccagattcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattctta 33602309  T
Q  133 cacctctata 142  Q
    ||||||||||    
T  33602308 cacctctata 33602299  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 51238023 - 51237916
Alignment:
Q  11 agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttctt-ggctcacgaatttcagataccca 109  Q
    |||||||||||| || |||| |||||||||||| | ||| ||  |||| || ||||||||||  || || |||||| |||||||||||||| || |||||    
T  51238023 agcagctacatcgtgtgctcgagctgccatttccggtgtgggaaatgtgccgagccatattcgggattt-tttcttaggctcacgaatttcggacaccca 51237925  T
Q  110 ttttcccca 118  Q
    |||||||||    
T  51237924 ttttcccca 51237916  T

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