View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4777-Insertion-6 (Length: 716)

Name: NF4777-Insertion-6
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4777-Insertion-6
NF4777-Insertion-6
[»] chr8 (4 HSPs)
chr8 (54-714)||(31686746-31687410)
chr8 (479-716)||(37928667-37928890)
chr8 (8-49)||(31688222-31688263)
chr8 (340-401)||(16839708-16839769)
[»] chr4 (7 HSPs)
chr4 (339-481)||(22652694-22652836)
chr4 (290-451)||(20509753-20509912)
chr4 (391-486)||(9830844-9830939)
chr4 (326-372)||(18921306-18921352)
chr4 (339-387)||(40434551-40434599)
chr4 (337-371)||(20457311-20457345)
chr4 (326-407)||(5634250-5634331)
[»] chr2 (6 HSPs)
chr2 (338-475)||(27008653-27008790)
chr2 (340-455)||(39116826-39116941)
chr2 (339-379)||(9584060-9584100)
chr2 (331-453)||(9840166-9840288)
chr2 (326-372)||(1998352-1998398)
chr2 (326-372)||(40427584-40427630)
[»] chr5 (8 HSPs)
chr5 (290-451)||(12864068-12864227)
chr5 (331-481)||(27483221-27483371)
chr5 (290-458)||(12832086-12832252)
chr5 (326-407)||(19315583-19315664)
chr5 (326-387)||(42457099-42457160)
chr5 (332-491)||(25325525-25325684)
chr5 (562-674)||(25325754-25325866)
chr5 (339-372)||(4926216-4926249)
[»] chr6 (2 HSPs)
chr6 (295-430)||(12687552-12687685)
chr6 (337-459)||(14436518-14436640)
[»] chr7 (4 HSPs)
chr7 (340-453)||(41528794-41528907)
chr7 (562-618)||(34236836-34236892)
chr7 (326-482)||(40682097-40682253)
chr7 (339-398)||(10274887-10274946)
[»] chr1 (5 HSPs)
chr1 (270-493)||(36099118-36099339)
chr1 (340-430)||(6724312-6724402)
chr1 (332-422)||(25392928-25393018)
chr1 (326-372)||(25529503-25529549)
chr1 (326-371)||(48611407-48611452)
[»] chr3 (3 HSPs)
chr3 (341-455)||(51346805-51346919)
chr3 (331-424)||(25845115-25845208)
chr3 (339-380)||(35503340-35503381)


Alignment Details
Target: chr8 (Bit Score: 595; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 54 - 714
Target Start/End: Complemental strand, 31687410 - 31686746
Alignment:
Q  54 taaatattgaattcactctattaaacacactaaattgattaaaatgatatatcttgcacctgagcaggcgtgatgatatttatcttttatgtagagatag 153  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31687410 taaatattgaattcactctattaaacacgctaaattgattaaaatgatatatcttgcacctgagcaggcgtgatgatatttatcttttatgtagagatag 31687311  T
Q  154 gtggtttagtgaccatttcgaacgctcccttggtaacgggaac-atacattattctggtcggatgtttggtgtggtgt-----cttttaaagttaggttc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  31687310 gtggtttagtgaccatttcgaacgctcccttggtaacgggaaccatacattattctggtcggatgtttggtgtggtgtggtgtcttttaaagttaggttc 31687211  T
Q  248 agtaggttctatgaattattggtgtttaaagaaatatcagtttttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcg 347  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31687210 agtaggttatatgaattattggtgtttaaagaaatatcagtttttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtggaggtggaggcg 31687111  T
Q  348 gaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggaca 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31687110 gaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgtacatttgcaggttgatagggatgccaaatggttgtggaca 31687011  T
Q  448 ttggaatcatctaatgtattctctgttcggagtgcatataatttcctatcagctcatcctccatttgtttcatcggttcctgttgctacgatgtggcata 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31687010 ttggaatcatctaatgtattctctgttcggagtgcatataatttcctatcagctcatcctccatttgtttcatcggttcctgttgcttcgatgtggcata 31686911  T
Q  548 aagatgtcctgttaaaggttgtgctgtttgcttaacgtttgttccgagacaagctgcctacaaaggacaatttgcattggcgtggtgttcttgatcatga 647  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  31686910 aagatgtcctgttaaaggttgtgctgtttgcttgacgtttgttccgagacaagctgcctac-aaggacaatttgcattggcgtggtgttcttgatcgtga 31686812  T
Q  648 cgcaaggatgtgtgtggctgggtgtgggttcgatcgaatcttcccaccacttgtttttattttgtaa 714  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31686811 cgcaaggatgtgtgtggctgggtgt-ggttcgatcgaatcttcccaccacttgtttttattttgtaa 31686746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 479 - 716
Target Start/End: Original strand, 37928667 - 37928890
Alignment:
Q  479 gtgcatataatttcctatcagctcatcctccatttgtttcatcggttcctgttgctacgatgtggcataaagatgtcctgttaaaggttgtgctgtttgc 578  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||   || |||||||||||||             |||||||| |||||    
T  37928667 gtgcatataatttcctatcagttcatcctccacttgtttcatcggttcctgttgactcgttgtggcataaaga-------------gttgtgctttttgc 37928753  T
Q  579 ttaacgtttgttccgagacaagctgcctacaaaggacaatttgcattggcgtggtgttcttgatcatgacgcaaggatgtgtgtggctgggtgtgggttc 678  Q
    ||  |||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  37928754 ttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcgtggtgttcttgatcgtgactcaaggatgtgtgtggctgggtgt-ggttc 37928852  T
Q  679 gatcgaatcttcccaccacttgtttttattttgtaata 716  Q
    ||||||||||||||| ||||||||||||  ||||||||    
T  37928853 gatcgaatcttcccagcacttgtttttacattgtaata 37928890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 31688263 - 31688222
Alignment:
Q  8 caaatagaataaagagcgatacctttaaaattctatcaatta 49  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31688263 caaatagaataaagagcgatacctttaaaattctatcaatta 31688222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 16839708 - 16839769
Alignment:
Q  340 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttca 401  Q
    |||||| ||||| | ||||||||||| ||||||| |||||| ||| |||| |||||||||||    
T  16839708 tggaggaggaggctttttgcgtgggaagaggaggtggtgggggaactaatcttattacttca 16839769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 339 - 481
Target Start/End: Original strand, 22652694 - 22652836
Alignment:
Q  339 gtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatgg 438  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||| | |||||| | |||||||||||   |||||||||| ||| |||||  | ||||    
T  22652694 gtggaggtggaggttgtttgcgtgggaggaggagatggtgggagaacttatgttactgcttcataatgtgactttgcaggttaataaggatgatagatgg 22652793  T
Q  439 ttgtggacattggaatcatctaatgtattctctgttcggagtg 481  Q
    || |||||||| ||| ||||| |||  || |||||||| ||||    
T  22652794 ttatggacatttgaaacatctcatgctttttctgttcgtagtg 22652836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 290 - 451
Target Start/End: Original strand, 20509753 - 20509912
Alignment:
Q  290 tttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaat 389  Q
    ||||||||| |||||||||||||||   | ||||||| |  |||||  | ||||||||||| |||||||||||||||||||||  |||||| |||||  |    
T  20509753 tttgatatgtgtcagttgggttgggaggaggagggtggg--gcgtggcgttggaggcggagtttgtttgcgtgggaggaggagttggtgggggaattcgt 20509850  T
Q  390 gttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattgg 451  Q
     ||||| ||||| ||||||  |||||||||| |||  ||||  |||||||||||||| ||||    
T  20509851 attattgcttcaaaatgttactttgcaggttaataatgatgataaatggttgtggacgttgg 20509912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 391 - 486
Target Start/End: Original strand, 9830844 - 9830939
Alignment:
Q  391 ttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattggaatcatctaatgtattctctgttcggagtgcatat 486  Q
    ||||| ||||| ||||||  ||||||||| || | ||||| ||||||| | ||||| |||||| | |||||||| |||||||||||||||||||||    
T  9830844 ttatttcttcacaatgttattttgcaggtcgaaaaggatgacaaatggctttggactttggaaacctctaatgttttctctgttcggagtgcatat 9830939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 18921306 - 18921352
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggag 372  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  18921306 gtgatgcgtggaggtggaggaggaggttgtttgcgtgggaggaggag 18921352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 40434551 - 40434599
Alignment:
Q  339 gtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaatta 387  Q
    ||||||||||||||||||||||||||| |||||| || |||| ||||||    
T  40434551 gtggaggcggaggttgtttgcgtgggaagaggagtagttgggggaatta 40434599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 20457311 - 20457345
Alignment:
Q  337 aggtggaggcggaggttgtttgcgtgggaggagga 371  Q
    ||||||||||||||||||||||| |||||||||||    
T  20457311 aggtggaggcggaggttgtttgcttgggaggagga 20457345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 5634250 - 5634331
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgt 407  Q
    |||| ||||| | ||||||||||||| |||||| |||||| |||||| ||||||| ||| ||   ||||||||||| |||||    
T  5634250 gtgaggcgtggaagtggaggcggaggctgtttgtgtgggaagaggagaaggtgggggaactatgtttattacttcacaatgt 5634331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 338 - 475
Target Start/End: Original strand, 27008653 - 27008790
Alignment:
Q  338 ggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatg 437  Q
    |||||||||  | ||||||||||||||||||||||  |||||| ||| | || ||| |||||||||||||   |||||||||||||| ||| | || |||    
T  27008653 ggtggaggcatatgttgtttgcgtgggaggaggagttggtgggggaacttatattactacttcataatgtgactttgcaggttgataaggaagacatatg 27008752  T
Q  438 gttgtggacattggaatcatctaatgtattctctgttc 475  Q
    | | |||||||||||||||||| |||  ||||||||||    
T  27008753 gctatggacattggaatcatctcatgctttctctgttc 27008790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 455
Target Start/End: Original strand, 39116826 - 39116941
Alignment:
Q  340 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatggt 439  Q
    |||||||| |||||||||||||||||||||||   |||||| ||| | || ||| ||||||||||||||   ||||||||| ||| |||||  ||||||     
T  39116826 tggaggcgtaggttgtttgcgtgggaggaggaattggtgggggaacttattttactacttcataatgttaccttgcaggttaatatggatgataaatggc 39116925  T
Q  440 tgtggacattggaatc 455  Q
    | ||||| ||||||||    
T  39116926 tttggactttggaatc 39116941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 9584100 - 9584060
Alignment:
Q  339 gtggaggcggaggttgtttgcgtgggaggaggaggaggtgg 379  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  9584100 gtggaggcggaggttgtttgcgtgggaggaggagcaggtgg 9584060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 453
Target Start/End: Original strand, 9840166 - 9840288
Alignment:
Q  331 gcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatg 430  Q
    ||||| ||||||||||||| | ||||||||||||||||||||  |||||| ||| | || |||   ||||| |||||   |||||||||| | | |||||    
T  9840166 gcgtggaggtggaggcggaagctgtttgcgtgggaggaggagttggtgggggaacttattttacagcttcaaaatgtgactttgcaggttaacaaggatg 9840265  T
Q  431 ccaaatggttgtggacattggaa 453  Q
      |||||||| ||||||||||||    
T  9840266 ataaatggttatggacattggaa 9840288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 1998398 - 1998352
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggag 372  Q
    |||| ||||| ||||||||| || |||||||||||||||||||||||    
T  1998398 gtgatgcgtggaggtggaggagggggttgtttgcgtgggaggaggag 1998352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 40427630 - 40427584
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggag 372  Q
    ||||| |||| ||||||||| | ||||||||||||||||||||||||    
T  40427630 gtgacacgtggaggtggaggtgtaggttgtttgcgtgggaggaggag 40427584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 290 - 451
Target Start/End: Complemental strand, 12864227 - 12864068
Alignment:
Q  290 tttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaat 389  Q
    ||||||||| |||||||||||||||   | ||||||| |  |||||  | ||||||||||| |||||||||||||||||||||  |||||| |||||  |    
T  12864227 tttgatatgtgtcagttgggttgggaggaggagggtggg--gcgtggcgttggaggcggagtttgtttgcgtgggaggaggagttggtgggggaattcgt 12864130  T
Q  390 gttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattgg 451  Q
     ||||| ||||| ||||||  |||||||||| |||  ||||  |||||||||||||| ||||    
T  12864129 attattgcttcaaaatgttactttgcaggttaataatgatgataaatggttgtggacgttgg 12864068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 331 - 481
Target Start/End: Complemental strand, 27483371 - 27483221
Alignment:
Q  331 gcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatg 430  Q
    ||||| || ||||||||||||||||||| |||||||||| ||  | | || |||||  ||||||||||||| |||||   |||||||||||| | |||||    
T  27483371 gcgtggagttggaggcggaggttgtttgtgtgggaggagcagatgttaggggaattgttgttattacttcacaatgtatttttgcaggttgacaaggatg 27483272  T
Q  431 ccaaatggttgtggacattggaatcatctaatgtattctctgttcggagtg 481  Q
     ||||||| | || || ||||| || |||||||| | ||||||||| ||||    
T  27483271 acaaatggctatgtactttggattcttctaatgtttactctgttcgtagtg 27483221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 458
Target Start/End: Complemental strand, 12832252 - 12832086
Alignment:
Q  290 tttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaat 389  Q
    ||||||||| |||||||||||||||   | ||||||| |  |||||  | |||||| |||| |||||||||||||||||||||  |||||| |||||  |    
T  12832252 tttgatatgtgtcagttgggttgggaggaggagggtggg--gcgtggcgttggaggtggagtttgtttgcgtgggaggaggagttggtgggggaattcgt 12832155  T
Q  390 gttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattggaatcatc 458  Q
     ||||| ||||| ||||||  |||||||||| |||  ||||  |||||| ||||||| |||||| ||||    
T  12832154 attattgcttcaaaatgttactttgcaggttaataatgatgataaatggctgtggacgttggaaacatc 12832086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 407
Target Start/End: Complemental strand, 19315664 - 19315583
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgt 407  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||  |||||| ||| | |||||| | ||||| |||||    
T  19315664 gtgaggcgtggaggtggaggcggaggttgtttgcgtgggaggaggagttggtgggggaacttatgttactgcttcacaatgt 19315583  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 42457099 - 42457160
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaatta 387  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  42457099 gtgaggcgtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtgggggaatta 42457160  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 332 - 491
Target Start/End: Original strand, 25325525 - 25325684
Alignment:
Q  332 cgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgc 431  Q
    |||| |||||| ||| |||||||||||||||||||||| ||||| |||| ||| |  || |||| ||||| |||||| ||||  ||||||| | |  ||     
T  25325525 cgtggaggtggtggcagaggttgtttgcgtgggaggagaaggagatgggggaactgctgatattgcttcaaaatgttaatttataggttgagaagattga 25325624  T
Q  432 caaatggttgtggacattggaatcatctaatgtattctctgttcggagtgcatataattt 491  Q
     |||||| | |||||||||||||| |||||| |||||  |||||  ||||| ||||||||    
T  25325625 aaaatggctttggacattggaatcttctaatatattcattgttcctagtgcctataattt 25325684  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 674
Target Start/End: Original strand, 25325754 - 25325866
Alignment:
Q  562 aaggttgtgctgtttgcttaacgtttgttccgagacaagctgcctacaaaggacaatttgcattggcgtggtgttcttgatcatgacgcaaggatgtgtg 661  Q
    ||||| ||| |||||||||  || |||||  |||||||| |||||||||| |||| ||||  |   || |||||| ||||||||||  | ||||||||||    
T  25325754 aaggtggtgttgtttgcttggcggttgtttagagacaagttgcctacaaaagacattttgtttcatcgcggtgttattgatcatgattctaggatgtgtg 25325853  T
Q  662 tggctgggtgtgg 674  Q
    |||||||||||||    
T  25325854 tggctgggtgtgg 25325866  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 4926216 - 4926249
Alignment:
Q  339 gtggaggcggaggttgtttgcgtgggaggaggag 372  Q
    ||||||||||||||||||||| ||||||||||||    
T  4926216 gtggaggcggaggttgtttgcatgggaggaggag 4926249  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 430
Target Start/End: Original strand, 12687552 - 12687685
Alignment:
Q  295 tatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttat 394  Q
    |||||||||||| || |||||| | ||||||| |  ||||| || |||||||| ||||||||| ||||||||||||||  |||||| ||  | || ||||    
T  12687552 tatgagtcagttagggtggggtgaggagggtggg--gcgtggagatggaggcgtaggttgtttacgtgggaggaggagttggtgggggacctcattttat 12687649  T
Q  395 tacttcataatgttcatttgcaggttgatagggatg 430  Q
    ||||||||||||||  |||||||||| ||| |||||    
T  12687650 tacttcataatgttactttgcaggttaatatggatg 12687685  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 14436640 - 14436518
Alignment:
Q  337 aggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaat 436  Q
    ||||||||||||||||||| ||||||||||||||||    |||| ||| | || ||| | |||||||||||   ||| |||||||| | ||||| || ||    
T  14436640 aggtggaggcggaggttgtatgcgtgggaggaggagatattgggggaacttattttactgcttcataatgtgtctttacaggttgacaaggatgacagat 14436541  T
Q  437 ggttgtggacattggaatcatct 459  Q
    || | |||||||||||| |||||    
T  14436540 ggctatggacattggaaacatct 14436518  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 453
Target Start/End: Original strand, 41528794 - 41528907
Alignment:
Q  340 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatggt 439  Q
    ||||| ||||| |||||||||||||||||||||  ||||||  |||| || ||||| ||||| ||||||  |||||||||| |||  ||||  |||||||    
T  41528794 tggagacggagtttgtttgcgtgggaggaggagttggtggggtaattcatattattgcttcaaaatgttactttgcaggttaataatgatgataaatggt 41528893  T
Q  440 tgtggacattggaa 453  Q
    ||||||| ||||||    
T  41528894 tgtggacgttggaa 41528907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 618
Target Start/End: Original strand, 34236836 - 34236892
Alignment:
Q  562 aaggttgtgctgtttgcttaacgtttgttccgagacaagctgcctacaaaggacaat 618  Q
    ||||| ||| ||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  34236836 aaggtggtgttgtttgcttgacgtttgttccgagataagctgcctacaaaagacaat 34236892  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 482
Target Start/End: Original strand, 40682097 - 40682253
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatag 425  Q
    |||| ||||| | ||||||| ||||||||||||| |||||||||||| ||||||| ||| |    ||||||||||| |||||   |||||||||||| |     
T  40682097 gtgaggcgtggaagtggaggaggaggttgtttgcatgggaggaggagaaggtgggggaactttgtttattacttcaaaatgtaactttgcaggttgaaaa 40682196  T
Q  426 ggatgccaaatggttgtggacattggaatcatctaatgtattctctgttcggagtgc 482  Q
    ||| | || |||| | || |  ||||||  ||||||||| ||||||||||| |||||    
T  40682197 ggaggacatatggctttgaaatttggaaaaatctaatgtgttctctgttcgtagtgc 40682253  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 10274887 - 10274946
Alignment:
Q  339 gtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattact 398  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||| | | |||||||||    
T  10274887 gtggaggcgaaggttgtttgcgtgggaggaggaggtggtgggggaacttaggttattact 10274946  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 270 - 493
Target Start/End: Complemental strand, 36099339 - 36099118
Alignment:
Q  270 tgtttaaagaaatatcagtttttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggag 369  Q
    ||||||||||  ||||||||||||||||||||||||| || |||||  ||||||| | |  | ||| || || ||| ||||||| |||| ||||||||||    
T  36099339 tgtttaaagagttatcagtttttgatatgagtcagttaggctggggagaagagggaggg--gtgtggagttgaaggtggaggttatttgtgtgggaggag 36099242  T
Q  370 gaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattggaatcatctaatgtattct 469  Q
    |||  | || | ||| |  ||||||| ||||| ||||||  ||||||||| || | ||||| || |||| | |||||||| ||||| |||||||  |||     
T  36099241 gagttgttgagggaaatgttgttattgcttcacaatgttattttgcaggtcgacaaggatgacatatggctatggacattagaatcttctaatgctttca 36099142  T
Q  470 ctgttcggagtgcatataatttcc 493  Q
     |||||| ||||| ||| ||||||    
T  36099141 gtgttcgtagtgcctatcatttcc 36099118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 6724402 - 6724312
Alignment:
Q  340 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatg 430  Q
    |||||||||||||||||||||||||||||||||  |||||| ||| | |  ||| | |||| ||||||| ||||||||||| ||| |||||    
T  6724402 tggaggcggaggttgtttgcgtgggaggaggagttggtgggggaaattaaattactgcttcttaatgttaatttgcaggttaataaggatg 6724312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 422
Target Start/End: Complemental strand, 25393018 - 25392928
Alignment:
Q  332 cgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttga 422  Q
    |||| |||||| | |||||||||||||| ||||||||||||  |||||| ||| | | |||| | |||||||||||   ||||||||||||    
T  25393018 cgtggaggtggtgacggaggttgtttgcatgggaggaggagttggtgggggaacttaggttacttcttcataatgtgactttgcaggttga 25392928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 25529503 - 25529549
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggag 372  Q
    |||||||||| ||||||| | ||||||||||||| ||||||||||||    
T  25529503 gtgacgcgtggaggtggatgaggaggttgtttgcatgggaggaggag 25529549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 48611452 - 48611407
Alignment:
Q  326 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggagga 371  Q
    |||| ||||| | |||||||||||||||||| ||||||||||||||    
T  48611452 gtgaggcgtggacgtggaggcggaggttgttcgcgtgggaggagga 48611407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 455
Target Start/End: Complemental strand, 51346919 - 51346805
Alignment:
Q  341 ggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatggtt 440  Q
    |||||||| | |||||||||||||||||||||| |||||| ||| |    ||||||||||| ||| |   |||||||||||||| ||| | ||||||| |    
T  51346919 ggaggcggggattgtttgcgtgggaggaggaggcggtgggggaactctgtttattacttcaaaatatgactttgcaggttgataaggaggacaaatggct 51346820  T
Q  441 gtggacattggaatc 455  Q
     ||||  ||||||||    
T  51346819 ttggaatttggaatc 51346805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 25845115 - 25845208
Alignment:
Q  331 gcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgata 424  Q
    ||||| || |||||| || |||||||||| ||||||||||||  |||||  ||| | |  |||||||||||||||||   ||||||||||||||    
T  25845115 gcgtggagttggaggtggcggttgtttgcttgggaggaggagttggtggacgaacttagattattacttcataatgtcactttgcaggttgata 25845208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 35503340 - 35503381
Alignment:
Q  339 gtggaggcggaggttgtttgcgtgggaggaggaggaggtggg 380  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  35503340 gtggagacggagattgtttgcgtgggaggaggagcaggtggg 35503381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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