View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777-Insertion-7 (Length: 676)
Name: NF4777-Insertion-7
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Complemental strand, 38207772 - 38207295
Alignment:
| Q |
6 |
caaatactaccacctctcaatgaagataacaaagtcataaactcatcatcaatcacatcaaattctacctgattttgaagcaaacaatacttggaaacaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207772 |
caaatactaccacctctcaatgaagataacaaagtcataaactcatcatcaatcacatcaaattctacctgattttgaagcaaacaatacttggaaacaa |
38207673 |
T |
|
| Q |
106 |
catcgtccgacaaaactttgttcctgcaaagtggacaagtagcacaatattgttcttgcaagaaccacttgtccaaacaatccttatgaaatgtgtgttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207672 |
catcgtccgacaaaactttgttcctgcaaagtggacaagtagcacaatattgttcttgcaagaaccacttgtccaaacaatccttatgaaatgtgtgttc |
38207573 |
T |
|
| Q |
206 |
acagttcaagcttctaacaatgtccccttcctcaaactcagataaacataccctacaatctatgtgctctgctgcaagcttcttcaaccttgttgtgggg |
305 |
Q |
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| T |
38207572 |
acagttcaagcttctaacaatgtccccttcctcaaactcagataaacataccctacaatctatgtgctctgctgcaagcttcttcaaccttgttgtgggg |
38207473 |
T |
|
| Q |
306 |
ttcttctcttcaatgaaattgaggtattgggttgtggtaattggattttttgttgactttaggtaacaaatgacaaggataagttcgattagcatatatg |
405 |
Q |
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| T |
38207472 |
ttcttctcttcaatgaaattgaggtattgggttgtggtaattggattttttgttgactttaggtaacaaatgacaaggataagttcgattagcatatatg |
38207373 |
T |
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| Q |
406 |
taaataggactattgttttcacataaagctgatataagaggtcagagagaattgtcattgtttgttggtgctattcaa |
483 |
Q |
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| T |
38207372 |
taaataggactattgttttcacataaagctgatataagagctcagagagaattgtcattgtttgttggtgctattcaa |
38207295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 518 - 663
Target Start/End: Complemental strand, 38207260 - 38207115
Alignment:
| Q |
518 |
atacaaaaagaatgaatgcagattggtcaggtgcactttaattataaccttttggggaagtaggttgttattttcatttttatttgtatgtacnnnnnnn |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207260 |
atacaaaaagaatgaatgcagattggtcaggtgcactttaattataaccttttggggaagtaggttgttattttcatttttatttgtatgtacttttttt |
38207161 |
T |
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| Q |
618 |
nagagtattattatttgtatatacttattagaccatatacaatggt |
663 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
38207160 |
tagaggattattatttgtatatacttattagaccatgtacaatggt |
38207115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 39840219 - 39840183
Alignment:
| Q |
168 |
aaccacttgtccaaacaatccttatgaaatgtgtgtt |
204 |
Q |
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||||| || |||||||||||||||||||||||||||| |
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| T |
39840219 |
aaccatttatccaaacaatccttatgaaatgtgtgtt |
39840183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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