View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4777-Insertion-8 (Length: 609)

Name: NF4777-Insertion-8
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4777-Insertion-8
NF4777-Insertion-8
[»] scaffold0013 (3 HSPs)
scaffold0013 (40-247)||(102164-102371)
scaffold0013 (338-578)||(102455-102695)
scaffold0013 (364-413)||(105080-105129)
[»] chr4 (3 HSPs)
chr4 (40-245)||(154294-154499)
chr4 (40-245)||(100415-100620)
chr4 (40-245)||(10307662-10307867)
[»] chr7 (1 HSPs)
chr7 (40-250)||(13041209-13041419)
[»] chr8 (3 HSPs)
chr8 (40-245)||(5700912-5701117)
chr8 (40-245)||(5680859-5681064)
chr8 (40-245)||(5731501-5731706)
[»] chr3 (1 HSPs)
chr3 (40-244)||(12143013-12143217)
[»] scaffold0059 (1 HSPs)
scaffold0059 (364-413)||(70519-70568)


Alignment Details
Target: scaffold0013 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 40 - 247
Target Start/End: Original strand, 102164 - 102371
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  102164 acctgaaaacgccagaggagatcaccgcagggcttgactttgaagcggttgttatagaaattcttacgagcttcttcaacttgggccctctcttcttcac 102263  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  102264 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 102363  T
Q  240 catctttc 247  Q
    ||||||||    
T  102364 catctttc 102371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 338 - 578
Target Start/End: Original strand, 102455 - 102695
Alignment:
Q  338 cattatatcttgttgtattattaagggggattaagcacacgctgtcaaactaagtggcttttagtacaagttaggtannnnnnnnggtagaattagtaca 437  Q
    |||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||    
T  102455 cattattttttgttgtattattaaggg--attaagcacacgctgtcaaactaagtggcttttagtacaagttacgta-tttttttggtagaattagtaca 102551  T
Q  438 aggtaggnnnnnnnnnggaggaatgtacaagataggttatcaagcc----tatattaaacacgtgtttgttacgatt--aataaaaatgattttgacata 531  Q
    |||||||           ||||| ||||||| |||||||||| |||    ||||||||| || | |||||||| |||  ||||||||||||||||| ||     
T  102552 aggtaggttttatttt--aggaaagtacaaggtaggttatcaggcctgtatatattaaaaacctctttgttactattacaataaaaatgattttgatat- 102648  T
Q  532 aaaatagagcttgtttgttacgagaaaagagtcattcctattgccgc 578  Q
    ||||||||||| |||||||||  ||| ||||||||| ||||||||||    
T  102649 aaaatagagctcgtttgttaccggaagagagtcatttctattgccgc 102695  T

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Target: scaffold0013; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 105080 - 105129
Alignment:
Q  364 gggattaagcacacgctgtcaaactaagtggcttttagtacaagttaggt 413  Q
    |||| |||||| ||||||| ||| |||||| |||||||||||||||||||    
T  105080 gggaataagcatacgctgtaaaattaagtgacttttagtacaagttaggt 105129  T

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Target: chr4 (Bit Score: 138; Significance: 8e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 154499 - 154294
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||||||||| ||||| ||||| |||| ||| || ||||||||||| |||||||||||||||||||||| ||||||||| || || ||||||||||    
T  154499 acctgaaaacgccaaaggagatcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctttcttcttcac 154400  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||    
T  154399 tacctgcttctggatcatactcccatgtttgtcttcccacaaaactatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttcca 154300  T
Q  240 catctt 245  Q
    ||||||    
T  154299 catctt 154294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 100620 - 100415
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||| || || ||||||||||    
T  100620 acctgaaaacgccataggaggtcaccacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttcttcac 100521  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||   || ||| | ||||||||| ||||    
T  100520 tacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattctttccctctccaatcttcagcttcca 100421  T
Q  240 catctt 245  Q
    ||||||    
T  100420 catctt 100415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 10307662 - 10307867
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||||||| | ||||||||||| |||| ||| |||||||| ||||| |||||||||||||||||| ||| ||||||||| || |||||||||||||    
T  10307662 acctgaaaacgcgaaaggaggtcaccacaggtcttaaccttgaaacggttattatagaaattcttacgaacttcttcaacttgagctctctcttcttcac 10307761  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    |||||||||||||||| || ||||||||||| || |||||| | || ||||| |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  10307762 tacctgcttctggatcctattcccatgtttggctccccacagaattgtttgtgctgaataagtatgggtcattcccaccttctgctatcttcagcttcca 10307861  T
Q  240 catctt 245  Q
    ||||||    
T  10307862 catctt 10307867  T

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Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 13041419 - 13041209
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||||||||| ||||||||||  ||  ||||||| || |||||||||||||| ||||||| |||||||| ||||||||| || ||||| ||   |     
T  13041419 acctgaaaacgccaaaggaggtcactacatagcttgactttaaagcggttgttataaaaattctgacgagcttcttcaacttgtgctctctcctccaaag 13041320  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||| ||||| ||||||| |||||||| ||| ||||| ||||||||||||| ||||||    
T  13041319 tacctgcttttggatcatactcccatatttgtcttcctacaaagttgtttgtgctgaatatgtatgggtcattaccaccatctgctatcttcaacctcca 13041220  T
Q  240 catctttcttt 250  Q
    |||||||||||    
T  13041219 catctttcttt 13041209  T

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Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 5700912 - 5701117
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||||||||| || ||||||| ||||||||| || ||||| || |||||||||||||  | ||| |||||||||||||| || ||||| ||   |     
T  5700912 acctgaaaacgccaaagaaggtcactgcagggcttaactttgaaacgattgttatagaaatgttgacgtgctttttcaacttgagctctctcctcagaag 5701011  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    |||| || | ||||||| |||||||||| || || || | |||||||||||||||||||| |||||| | |||||| || ||||||||||||||||||||    
T  5701012 taccagcatttggatcaaactcccatgtctgcctccctaaaaagttatttgtactgaatatgtatggatcattccccccatctgctatcttcagcctcca 5701111  T
Q  240 catctt 245  Q
    ||||||    
T  5701112 catctt 5701117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 5680859 - 5681064
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||| ||||| || ||||||| ||||||||| || ||||| || |||| ||||||||  | ||| |||||||||||||| |  ||||| ||   |     
T  5680859 acctgaaagcgccaaagaaggtcactgcagggcttaactttgaaacgattgtcatagaaatgttgacgtgctttttcaacttgagatctctcctcaggag 5680958  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    |||| || || | |||| |||||||||| || || ||||||||||||||||||||||||| |||||| |  |||||||| ||||||||||||||||||||    
T  5680959 taccagcatcagcatcaaactcccatgtctgcctccccacaaagttatttgtactgaatatgtatggatccttcccaccatctgctatcttcagcctcca 5681058  T
Q  240 catctt 245  Q
    ||||||    
T  5681059 catctt 5681064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 5731501 - 5731706
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||| ||||| || ||||||| |||||| || || ||||| || |||||||||||||  | ||| |||||||||||||| || ||||| ||   |     
T  5731501 acctgaaagcgccaaagaaggtcactgcagggtttaactttgaaacgattgttatagaaatgttgacgtgctttttcaacttgagctctctcctcagaag 5731600  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    |||| || | ||||||| |||||||||| || || || | |||||||||||||||||||| || ||| | |||||| || ||||||||||||||||||||    
T  5731601 taccagcatttggatcaaactcccatgtctgcctccctaaaaagttatttgtactgaatatgtgtggatcattccccccatctgctatcttcagcctcca 5731700  T
Q  240 catctt 245  Q
    ||||||    
T  5731701 catctt 5731706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 12143013 - 12143217
Alignment:
Q  40 acctgaaaacgccagaggaggtcaccgcagggcttgaccttgaagcggttgttatagaaattcttacgagctttttcaacttgggccctctcttcttcac 139  Q
    |||||||| ||||| |||||||| || || ||||| ||||| || |||||| |||||||||| | |||||||| ||||||    || |  ||||| | |     
T  12143013 acctgaaagcgccaaaggaggtcgccacatggcttaaccttaaatcggttgatatagaaattgtgacgagcttcttcaaccattgctcgttcttcatgag 12143112  T
Q  140 tacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctcca 239  Q
    ||||||| || || ||| | |||||||| |||||||| ||||||||||||||  |||||| ||| ||||  |||||||| ||||||||||| ||||||||    
T  12143113 tacctgcatcagggtcaaattcccatgtctgtcttcctacaaagttatttgtggtgaatatgtaagggtccttcccaccatctgctatcttaagcctcca 12143212  T
Q  240 catct 244  Q
    |||||    
T  12143213 catct 12143217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 70568 - 70519
Alignment:
Q  364 gggattaagcacacgctgtcaaactaagtggcttttagtacaagttaggt 413  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  70568 gggaataagcatacgctgtcaaactaagtgacttttagtacaagttaggt 70519  T

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