View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777-Insertion-9 (Length: 599)
Name: NF4777-Insertion-9
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 301 - 599
Target Start/End: Complemental strand, 30463159 - 30462861
Alignment:
| Q |
301 |
aatgaaaggggatgaatgcgttatcannnnnnnnnaagaatatgcctcatcattttttgaaaggctggccagtatcaaaattgactgcacttacagaaaa |
400 |
Q |
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| T |
30463159 |
aatgaaaggggatgaatgcgttatcatttattttttagaatatgcctcatcattttttgaaaggcttgccagtatcaaaattgactgcacttacagaaaa |
30463060 |
T |
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| Q |
401 |
ccgctataaatgtttatattgtttctatggcaataacataattggaagacaatttctacactccttactaaaagtggatattgttccgttgttgtcttgt |
500 |
Q |
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| T |
30463059 |
ccgctataaatgtttatattgtttctatggcaataacataattggaagacaatttctacactccttactaaaagtggatattgttccgttgttgtcttgt |
30462960 |
T |
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| Q |
501 |
ccaccactaaatatgagaccaatgtcctatggacttagtttaatcggcagagacgttgcagtatgtaaaggcggcgtttagaccccaattcctcactta |
599 |
Q |
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| T |
30462959 |
ccaccactaaatatgagaccaatgtcctatggacttagtttaatcggtagagacgttgcagtatgtaaagacggcgtttagaccccaattcctcactta |
30462861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 57 - 276
Target Start/End: Complemental strand, 30463377 - 30463157
Alignment:
| Q |
57 |
ctacttgcagtgttggtctgtttccattgcatgattattcatgtttgtggatgaccnnnnnnngaattgtcaaagggttttttgaaaattcatcataagt |
156 |
Q |
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| T |
30463377 |
ctacttgcagtgttggtctgtttccattgcatgattattcatgtttgtggatgacctttttttgaattgtcaaagggttttttgaaaattcatcacaagt |
30463278 |
T |
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| Q |
157 |
gctctcgtgagc-atctttttgtattatacatacatattattatttgtactgatgagcataaactaaatgaagagagtagagagaaatttaagtcacgtc |
255 |
Q |
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| T |
30463277 |
gctctcgtgagctatctttttgtattatacatacatattattatttgtactgatgagcataaactaaatgaagagagtagagagaaatttaagtcacgtc |
30463178 |
T |
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| Q |
256 |
agacaaagtatctatgataat |
276 |
Q |
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| T |
30463177 |
agacaaagtatctatgataat |
30463157 |
T |
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