View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777_high_1 (Length: 833)
Name: NF4777_high_1
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 784; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 1 - 817
Target Start/End: Complemental strand, 41704457 - 41703641
Alignment:
| Q |
1 |
aaatcaagcactggaggggagaaaccttacaaaatgtttcaactgaaagagttgaagaaagcaacaaactgtttttcacaagacaggatcctaggaagtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704457 |
aaatcaagcactggaggggagaaaccttacaaaatgtttcaactgaaagagttgaagaaagcaacaaactgtttttcacaagacaggatcctaggaagtg |
41704358 |
T |
|
| Q |
101 |
gtggctttggggaagtttacaaaggtgaactacaagatggaactattgtagctgtcaagaaagctagagttggtaaccttaaaagcacacaacaagtgct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704357 |
gtggctttggggaagtttacaaaggtgaactacaagatggaactattgtagctgtcaagaaagctagagttggtaaccttaaaagcacacaacaagtgct |
41704258 |
T |
|
| Q |
201 |
taatgaggtttcaatactttctcaagttaatcacaagaacctagtaagactcttaggttgctgtgtggaatctgagcagcctttgatgatctatgagtat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704257 |
taatgaggtttcaatactttctcaagttaatcacaagaacctagtaagactcttaggttgctgtgtggaatctgagcagcctttgatgatctatgagtat |
41704158 |
T |
|
| Q |
301 |
atctcaaatgggaccctctatgaccatattcatggtagatatccaaattttcttgactggnnnnnnnggcttaagattgcttttcaaacagctgaagcat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41704157 |
atctcaaatgggaccctctatgaccatattcatggtagatatccaaattttcttgactggaaaaaaaggcttaagattgcttttcaaacagctgaagcat |
41704058 |
T |
|
| Q |
401 |
tggcttacttgcattcttctgcacacacccctatttaccatagagatgttaagtcaacaaatatactgttggacaatgaattcgacgcaaaagtttcgga |
500 |
Q |
| |
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|
| T |
41704057 |
tggcttacttgcattcttctgcacacacccctatttaccatagagatgttaagtcaacaaatatactgttggacaatgaattcgacgcaaaagtttcgga |
41703958 |
T |
|
| Q |
501 |
ttttggactctctagattggctaacccgggacttagtcatgtgtctacctgtgctcagggaacactaggatacttggatcctgaatactatcgcaactac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41703957 |
ttttggactctctagattggctaacccgggacttagtcatgtgtctacctgtgctcagggaacactaggatacttggatcctgaatactaccgcaactac |
41703858 |
T |
|
| Q |
601 |
caattaaccgataaaagtgatgtttatagctatggagttgtgttactagagctcttgacttcacagaaagcaatagacttttctcgtgatcaagatgatg |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41703857 |
caattaaccgataaaagtgatgtttatagctatggagttgtgttactagagctcttgacttcacagaaagcaatagacttttctcgtgatgaagatgatg |
41703758 |
T |
|
| Q |
701 |
tcaacttagtaattcatgtgactcaatatgcaagcaatggtgcaatcatgcaagtggttgatcaaaggcttcttctatctgtggaacccttaagtagtaa |
800 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703757 |
tcaacttagtaattcatgtgagtcaatatgcaagcaatggtgcaatcatgcaagtggttgatcaaaggcttcttctatctgtggaacccttaagtagtaa |
41703658 |
T |
|
| Q |
801 |
attgatcacaagcatag |
817 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
41703657 |
attgatcacaagcatag |
41703641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 571 - 703
Target Start/End: Original strand, 41814550 - 41814682
Alignment:
| Q |
571 |
tacttggatcctgaatactatcgcaactaccaattaaccgataaaagtgatgtttatagctatggagttgtgttactagagctcttgacttcacagaaag |
670 |
Q |
| |
|
||||||||||| || |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||| |||||||| |
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| T |
41814550 |
tacttggatcccaaaaactaccgcaactgccagttaaccgataaaagtgatgtttatagctatggagttgtgctgctagagtttttgacttgacagaaag |
41814649 |
T |
|
| Q |
671 |
caatagacttttctcgtgatcaagatgatgtca |
703 |
Q |
| |
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|| |||| | ||||| |||||| |||||||||| |
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| T |
41814650 |
cagtagattcttctcatgatcatgatgatgtca |
41814682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 612 - 650
Target Start/End: Complemental strand, 44888589 - 44888551
Alignment:
| Q |
612 |
taaaagtgatgtttatagctatggagttgtgttactaga |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |
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| T |
44888589 |
taaaagtgatgtttatagctatggagttgtcttgctaga |
44888551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 550 - 677
Target Start/End: Original strand, 30910749 - 30910876
Alignment:
| Q |
550 |
tgtgctcagggaacactaggatacttggatcctgaatactatcgcaactaccaattaaccgataaaagtgatgtttatagctatggagttgtgttactag |
649 |
Q |
| |
|
|||||||| || ||||| || ||| | ||||||||||| ||| | ||||||||||| |||||||| ||||| |||||||| | || |||||||| || | |
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| T |
30910749 |
tgtgctcaagggacacttgggtaccttgatcctgaatattatagaaactaccaattgaccgataagagtgacgtttatagtttcggggttgtgttgcttg |
30910848 |
T |
|
| Q |
650 |
agctcttgacttcacagaaagcaataga |
677 |
Q |
| |
|
|||| ||||| || ||||| || ||||| |
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| T |
30910849 |
agcttttgacgtctcagaaggcgataga |
30910876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 638
Target Start/End: Original strand, 9118800 - 9118837
Alignment:
| Q |
601 |
caattaaccgataaaagtgatgtttatagctatggagt |
638 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||| |
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| T |
9118800 |
caattaaccgagaaaagtgatgtttatagctttggagt |
9118837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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